Additional file 2: of Phylogenomic analysis of cytochrome P450 multigene family and their differential expression analysis in Solanum lycopersicum L. suggested tissue specific promoters

Additional file 2: of New insights in the control of antioxidants accumulation in tomato by transcriptomic analyses of genotypes exhibiting contrasting levels of fruit metabolites

Adriana Sacco (798652)
Assunta Raiola (2793448)
Roberta Calafiore (6211133)
Amalia Barone (798659)
Maria Rigano (6211136)

January 2019

Table showing the sequences of adopted primers for RT-qPCR. The sequences of adopted primers for amp...

Table_1_Phylogenomic analysis of cytochrome P450 multigene family and its differential expression analysis in pepper (Capsicum annuum L.).xlsx

Yupeng Hao (14223167)
Zeyu Dong (12509491)
Yongyan Zhao (9289466)
Wenchen Tang (14223170)
Xueqiang Wang (1563862)
Jun Li (6494)
Luyao Wang (3958562)
Yan Hu (30839)
Lei Fang (46620)
Xueying Guan (214478)
Fenglin Gu (4069993)
Ziji Liu (3961154)
Zhiyuan Zhang (93194)

December 2022

Plant cytochrome P450 is a multifamily enzyme widely involved in biochemical reactions for the synth...

DataSheet_1_Phylogenomic analysis of cytochrome P450 multigene family and its differential expression analysis in pepper (Capsicum annuum L.).pdf

Yupeng Hao (14223167)
Zeyu Dong (12509491)
Yongyan Zhao (9289466)
Wenchen Tang (14223170)
Xueqiang Wang (1563862)
Jun Li (6494)
Luyao Wang (3958562)
Yan Hu (30839)
Lei Fang (46620)
Xueying Guan (214478)
Fenglin Gu (4069993)
Ziji Liu (3961154)
Zhiyuan Zhang (93194)

December 2022

Plant cytochrome P450 is a multifamily enzyme widely involved in biochemical reactions for the synth...

Additional file 6: of Phylogenomic analysis of cytochrome P450 multigene family and their differential expression analysis in Solanum lycopersicum L. suggested tissue specific promoters

A. Vasav (6314315)
V. Barvkar (6314318)

February 2019

Tissue specific expression of P450 with FPKM count. Highly expressed tomato P450 genes from heat map...

Additional file 5: of Phylogenomic analysis of cytochrome P450 multigene family and their differential expression analysis in Solanum lycopersicum L. suggested tissue specific promoters

A. Vasav (6314315)
V. Barvkar (6314318)

February 2019

Promoter analysis Table. Promoter analysis of all the protein coding genes in tomato with promoter m...

Additional file 7: of Phylogenomic analysis of cytochrome P450 multigene family and their differential expression analysis in Solanum lycopersicum L. suggested tissue specific promoters

A. Vasav (6314315)
V. Barvkar (6314318)

February 2019

Table of P450 orthologue gene count in related plants. Comparison of tomato P450 gene along with oth...

Additional file 4: of Phylogenomic analysis of cytochrome P450 multigene family and their differential expression analysis in Solanum lycopersicum L. suggested tissue specific promoters

A. Vasav (6314315)
V. Barvkar (6314318)

February 2019

Intron analysis summary. Data for Intron map constructions and distribution. (XLSX 34 kb

Additional file 1: of Phylogenomic analysis of cytochrome P450 multigene family and their differential expression analysis in Solanum lycopersicum L. suggested tissue specific promoters

A. Vasav (6314315)
V. Barvkar (6314318)

February 2019

Table of SlP450 summary fileÂ 233 SlP450 sequences (genomic, transcript, CDS and protein) are provid...

Additional file 3: of Phylogenomic analysis of cytochrome P450 multigene family and their differential expression analysis in Solanum lycopersicum L. suggested tissue specific promoters

A. Vasav (6314315)
V. Barvkar (6314318)

February 2019

SlP450 phylogenetic tree inferred using Maximum likelihood method. Phylogenetic tree is constructed ...

Additional file 6: Table S4. of Evolutionary history and functional divergence of the cytochrome P450 gene superfamily between Arabidopsis thaliana and Brassica species uncover effects of whole genome and tandem duplications

Jingyin Yu (176516)
Sadia Tehrim (4444294)
Linhai Wang (2548483)
Komivi Dossa (3524930)
Xiurong Zhang (2548480)
Tao Ke (691886)
Boshou Liao (118400)

September 2017

Expression values of cytochrome P450 genes across different tissues among A. thaliana, B. rapa, and ...

Additional file 4: Table S2. of Evolutionary history and functional divergence of the cytochrome P450 gene superfamily between Arabidopsis thaliana and Brassica species uncover effects of whole genome and tandem duplications

Jingyin Yu (176516)
Sadia Tehrim (4444294)
Linhai Wang (2548483)
Komivi Dossa (3524930)
Xiurong Zhang (2548480)
Tao Ke (691886)
Boshou Liao (118400)

September 2017

Orthologous genes pairs from different whole genome duplication events in A. thaliana compared with ...

Additional file 2: of Identification of transcription factor genes involved in anthocyanin biosynthesis in carrot (Daucus carota L.) using RNA-Seq

Miyako Kodama (5614823)
Henrik Brinch-Pedersen (1759138)
Shrikant Sharma (1819531)
Inger Holme (3600365)
Bjarne Joernsgaard (3905599)
Tsaneta Dzhanfezova (3905605)
Daniel Amby (3528977)
Filipe Vieira (4908736)
Shanlin Liu (2851853)
M Gilbert (5947919)

November 2018

Sequence and primer properties used to analyses 11 candidate genes and GAPDH (Additional file 2.1), ...

Additional file 2: of Genome-wide analysis and expression profiling of zinc finger homeodomain (ZHD) family genes reveal likely roles in organ development and stress responses in tomato

Khadiza Khatun (4415215)
Ujjal Nath (3695998)
Arif Robin (4415218)
Jong-In Park (121860)
Do-Jin Lee (4415212)
Min-Bae Kim (4415209)
Chang Kim (3874609)
Ki-Byung Lim (4415206)
Ill Nou (4415203)
Mi-Young Chung (3120282)

September 2017

Table S1. List of primers used for qRT-PCR analysis and their sequence, product size, primer length,...

Additional file 2: of Transcriptome analysis and identification of genes related to terpenoid biosynthesis in Cinnamomum camphora

Caihui Chen (5556170)
Yongjie Zheng (5556173)
Yongda Zhong (5556167)
Yangfang Wu (4236607)
Zhiting Li (1299483)
Li-An Xu (42219)
Meng Xu (62933)

July 2018

Primer sequences used for quantitative reverse transcription polymerase chain reaction (qRT-PCR). (X...

Table_2_Phylogenomic analysis of cytochrome P450 multigene family and its differential expression analysis in pepper (Capsicum annuum L.).xlsx

Yupeng Hao (14223167)
Zeyu Dong (12509491)
Yongyan Zhao (9289466)
Wenchen Tang (14223170)
Xueqiang Wang (1563862)
Jun Li (6494)
Luyao Wang (3958562)
Yan Hu (30839)
Lei Fang (46620)
Xueying Guan (214478)
Fenglin Gu (4069993)
Ziji Liu (3961154)
Zhiyuan Zhang (93194)

December 2022

Plant cytochrome P450 is a multifamily enzyme widely involved in biochemical reactions for the synth...

Additional file 2: of New insights in the control of antioxidants accumulation in tomato by transcriptomic analyses of genotypes exhibiting contrasting levels of fruit metabolites

Adriana Sacco (798652)
Assunta Raiola (2793448)
Roberta Calafiore (6211133)
Amalia Barone (798659)
Maria Rigano (6211136)

January 2019

Table showing the sequences of adopted primers for RT-qPCR. The sequences of adopted primers for amp...

Table_1_Phylogenomic analysis of cytochrome P450 multigene family and its differential expression analysis in pepper (Capsicum annuum L.).xlsx

Yupeng Hao (14223167)
Zeyu Dong (12509491)
Yongyan Zhao (9289466)
Wenchen Tang (14223170)
Xueqiang Wang (1563862)
Jun Li (6494)
Luyao Wang (3958562)
Yan Hu (30839)
Lei Fang (46620)
Xueying Guan (214478)
Fenglin Gu (4069993)
Ziji Liu (3961154)
Zhiyuan Zhang (93194)

December 2022

Plant cytochrome P450 is a multifamily enzyme widely involved in biochemical reactions for the synth...

DataSheet_1_Phylogenomic analysis of cytochrome P450 multigene family and its differential expression analysis in pepper (Capsicum annuum L.).pdf

Yupeng Hao (14223167)
Zeyu Dong (12509491)
Yongyan Zhao (9289466)
Wenchen Tang (14223170)
Xueqiang Wang (1563862)
Jun Li (6494)
Luyao Wang (3958562)
Yan Hu (30839)
Lei Fang (46620)
Xueying Guan (214478)
Fenglin Gu (4069993)
Ziji Liu (3961154)
Zhiyuan Zhang (93194)

December 2022

Plant cytochrome P450 is a multifamily enzyme widely involved in biochemical reactions for the synth...

Additional file 6: of Phylogenomic analysis of cytochrome P450 multigene family and their differential expression analysis in Solanum lycopersicum L. suggested tissue specific promoters

A. Vasav (6314315)
V. Barvkar (6314318)

February 2019

Tissue specific expression of P450 with FPKM count. Highly expressed tomato P450 genes from heat map...

Additional file 5: of Phylogenomic analysis of cytochrome P450 multigene family and their differential expression analysis in Solanum lycopersicum L. suggested tissue specific promoters

A. Vasav (6314315)
V. Barvkar (6314318)

February 2019

Promoter analysis Table. Promoter analysis of all the protein coding genes in tomato with promoter m...

Additional file 7: of Phylogenomic analysis of cytochrome P450 multigene family and their differential expression analysis in Solanum lycopersicum L. suggested tissue specific promoters

A. Vasav (6314315)
V. Barvkar (6314318)

February 2019

Table of P450 orthologue gene count in related plants. Comparison of tomato P450 gene along with oth...

Additional file 4: of Phylogenomic analysis of cytochrome P450 multigene family and their differential expression analysis in Solanum lycopersicum L. suggested tissue specific promoters

A. Vasav (6314315)
V. Barvkar (6314318)

February 2019

Intron analysis summary. Data for Intron map constructions and distribution. (XLSX 34 kb

Additional file 1: of Phylogenomic analysis of cytochrome P450 multigene family and their differential expression analysis in Solanum lycopersicum L. suggested tissue specific promoters

A. Vasav (6314315)
V. Barvkar (6314318)

February 2019

Table of SlP450 summary fileÂ 233 SlP450 sequences (genomic, transcript, CDS and protein) are provid...

Additional file 3: of Phylogenomic analysis of cytochrome P450 multigene family and their differential expression analysis in Solanum lycopersicum L. suggested tissue specific promoters

A. Vasav (6314315)
V. Barvkar (6314318)

February 2019

SlP450 phylogenetic tree inferred using Maximum likelihood method. Phylogenetic tree is constructed ...

Additional file 6: Table S4. of Evolutionary history and functional divergence of the cytochrome P450 gene superfamily between Arabidopsis thaliana and Brassica species uncover effects of whole genome and tandem duplications

Jingyin Yu (176516)
Sadia Tehrim (4444294)
Linhai Wang (2548483)
Komivi Dossa (3524930)
Xiurong Zhang (2548480)
Tao Ke (691886)
Boshou Liao (118400)

September 2017

Expression values of cytochrome P450 genes across different tissues among A. thaliana, B. rapa, and ...

Additional file 4: Table S2. of Evolutionary history and functional divergence of the cytochrome P450 gene superfamily between Arabidopsis thaliana and Brassica species uncover effects of whole genome and tandem duplications

Jingyin Yu (176516)
Sadia Tehrim (4444294)
Linhai Wang (2548483)
Komivi Dossa (3524930)
Xiurong Zhang (2548480)
Tao Ke (691886)
Boshou Liao (118400)

September 2017

Orthologous genes pairs from different whole genome duplication events in A. thaliana compared with ...

Additional file 2: of Identification of transcription factor genes involved in anthocyanin biosynthesis in carrot (Daucus carota L.) using RNA-Seq

Miyako Kodama (5614823)
Henrik Brinch-Pedersen (1759138)
Shrikant Sharma (1819531)
Inger Holme (3600365)
Bjarne Joernsgaard (3905599)
Tsaneta Dzhanfezova (3905605)
Daniel Amby (3528977)
Filipe Vieira (4908736)
Shanlin Liu (2851853)
M Gilbert (5947919)

November 2018

Sequence and primer properties used to analyses 11 candidate genes and GAPDH (Additional file 2.1), ...

Additional file 2: of Genome-wide analysis and expression profiling of zinc finger homeodomain (ZHD) family genes reveal likely roles in organ development and stress responses in tomato

Khadiza Khatun (4415215)
Ujjal Nath (3695998)
Arif Robin (4415218)
Jong-In Park (121860)
Do-Jin Lee (4415212)
Min-Bae Kim (4415209)
Chang Kim (3874609)
Ki-Byung Lim (4415206)
Ill Nou (4415203)
Mi-Young Chung (3120282)

September 2017

Table S1. List of primers used for qRT-PCR analysis and their sequence, product size, primer length,...

Additional file 2: of Transcriptome analysis and identification of genes related to terpenoid biosynthesis in Cinnamomum camphora

Caihui Chen (5556170)
Yongjie Zheng (5556173)
Yongda Zhong (5556167)
Yangfang Wu (4236607)
Zhiting Li (1299483)
Li-An Xu (42219)
Meng Xu (62933)

July 2018

Primer sequences used for quantitative reverse transcription polymerase chain reaction (qRT-PCR). (X...

Table_2_Phylogenomic analysis of cytochrome P450 multigene family and its differential expression analysis in pepper (Capsicum annuum L.).xlsx

Yupeng Hao (14223167)
Zeyu Dong (12509491)
Yongyan Zhao (9289466)
Wenchen Tang (14223170)
Xueqiang Wang (1563862)
Jun Li (6494)
Luyao Wang (3958562)
Yan Hu (30839)
Lei Fang (46620)
Xueying Guan (214478)
Fenglin Gu (4069993)
Ziji Liu (3961154)
Zhiyuan Zhang (93194)

December 2022

Plant cytochrome P450 is a multifamily enzyme widely involved in biochemical reactions for the synth...

Additional file 2: of New insights in the control of antioxidants accumulation in tomato by transcriptomic analyses of genotypes exhibiting contrasting levels of fruit metabolites

Adriana Sacco (798652)
Assunta Raiola (2793448)
Roberta Calafiore (6211133)
Amalia Barone (798659)
Maria Rigano (6211136)

January 2019

Table showing the sequences of adopted primers for RT-qPCR. The sequences of adopted primers for amp...

Table_1_Phylogenomic analysis of cytochrome P450 multigene family and its differential expression analysis in pepper (Capsicum annuum L.).xlsx

Yupeng Hao (14223167)
Zeyu Dong (12509491)
Yongyan Zhao (9289466)
Wenchen Tang (14223170)
Xueqiang Wang (1563862)
Jun Li (6494)
Luyao Wang (3958562)
Yan Hu (30839)
Lei Fang (46620)
Xueying Guan (214478)
Fenglin Gu (4069993)
Ziji Liu (3961154)
Zhiyuan Zhang (93194)

December 2022

Plant cytochrome P450 is a multifamily enzyme widely involved in biochemical reactions for the synth...

DataSheet_1_Phylogenomic analysis of cytochrome P450 multigene family and its differential expression analysis in pepper (Capsicum annuum L.).pdf

Yupeng Hao (14223167)
Zeyu Dong (12509491)
Yongyan Zhao (9289466)
Wenchen Tang (14223170)
Xueqiang Wang (1563862)
Jun Li (6494)
Luyao Wang (3958562)
Yan Hu (30839)
Lei Fang (46620)
Xueying Guan (214478)
Fenglin Gu (4069993)
Ziji Liu (3961154)
Zhiyuan Zhang (93194)

December 2022

Plant cytochrome P450 is a multifamily enzyme widely involved in biochemical reactions for the synth...

Additional file 2: of Phylogenomic analysis of cytochrome P450 multigene family and their differential expression analysis in Solanum lycopersicum L. suggested tissue specific promoters

Abstract

Extracted data

Additional file 2: of Phylogenomic analysis of cytochrome P450 multigene family and their differential expression analysis in Solanum lycopersicum L. suggested tissue specific promoters

Abstract

Extracted data

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