Figure S3. Classes of ncRNAs and snoRNA clusters. A) Boxplot showing expression of the sRNAs that differ significantly between tumor and normal samples, grouped by RNA classes. B) A scatterplot of genomic clustered snoRNAs showing log fold change values between tumor and normal (y-axis) for each individual snoRNA within the clusters. The clusters are indicated with a unique ID on each facet of the plot. The figure only includes snoRNAs that are significantly differentially expressed between tumor and normal. The p-values are calculated using a two-tailed student’s t-test. C) Log fold change values for snoRNAs that are not contained within a genomic cluster. D) Genome browser graphics of snoRNAs adjacent to the MEG3 gene. The graphics is fro...
Data Set Entire set of top differentially expressed miRNAs is given in Additional Data Set. For each...
The distribution of small RNAs on the sno-miR775 and (b) sno-miR779. Small RNA sequences were adopte...
Supplementary materials: Table S1. Primer sequences for qRT- PCR. Table S2. The clinical characteris...
Figure S2. MicroRNA clusters and isomiRs. A) A scatterplot of genomic clustered miRNAs showing log f...
Figure S5. Expression of F. nucleatum and EBV miRNA in TCGA data and correlation with clinical param...
Figure S1. Sequencing statistics. A) Library size: Number of raw reads in the samples; Alignment: Nu...
Contains sequencing statistics results and additional methods description. (DOCX 49 kb
Figure S3. Expression levels of the top eight significant miRNAs in tumor tissues and their adjacent...
Figure S1. Topological features of the identified modules and the ceRNA regulatory module network. T...
The scatter plot of differentially expressed genes in miRNA and mRNA for all 238 pairs in eight canc...
Principal component analysis plot. Visualization of different miRNA expression in tumor and normal t...
Table S1. miRNAs differentialy expressed in NPC versus control. Table S2. The top 20 most significan...
The list of BRCA miRNAs, BRCA genes, and cancer hallmark genes. There are 428 BRCA miRNAs, 2949 BRCA...
Figure S5. Examination of miR-146a-5p/Numb axis in expanded CT26-SDCSCs. (A) RT-qPCR of cellular miR...
The genes targeted by downregulated miRNAs. Table S2. The genes targeted by upregulated miRNAs. (XLS...
Data Set Entire set of top differentially expressed miRNAs is given in Additional Data Set. For each...
The distribution of small RNAs on the sno-miR775 and (b) sno-miR779. Small RNA sequences were adopte...
Supplementary materials: Table S1. Primer sequences for qRT- PCR. Table S2. The clinical characteris...
Figure S2. MicroRNA clusters and isomiRs. A) A scatterplot of genomic clustered miRNAs showing log f...
Figure S5. Expression of F. nucleatum and EBV miRNA in TCGA data and correlation with clinical param...
Figure S1. Sequencing statistics. A) Library size: Number of raw reads in the samples; Alignment: Nu...
Contains sequencing statistics results and additional methods description. (DOCX 49 kb
Figure S3. Expression levels of the top eight significant miRNAs in tumor tissues and their adjacent...
Figure S1. Topological features of the identified modules and the ceRNA regulatory module network. T...
The scatter plot of differentially expressed genes in miRNA and mRNA for all 238 pairs in eight canc...
Principal component analysis plot. Visualization of different miRNA expression in tumor and normal t...
Table S1. miRNAs differentialy expressed in NPC versus control. Table S2. The top 20 most significan...
The list of BRCA miRNAs, BRCA genes, and cancer hallmark genes. There are 428 BRCA miRNAs, 2949 BRCA...
Figure S5. Examination of miR-146a-5p/Numb axis in expanded CT26-SDCSCs. (A) RT-qPCR of cellular miR...
The genes targeted by downregulated miRNAs. Table S2. The genes targeted by upregulated miRNAs. (XLS...
Data Set Entire set of top differentially expressed miRNAs is given in Additional Data Set. For each...
The distribution of small RNAs on the sno-miR775 and (b) sno-miR779. Small RNA sequences were adopte...
Supplementary materials: Table S1. Primer sequences for qRT- PCR. Table S2. The clinical characteris...