The affordability of high throughput DNA sequencing has allowed us to explore the dynamics of microbial populations in various ecosystems. Mathematical modeling and simulation of such microbiome time series data can help in getting better understanding of bacterial communities. In this paper, we present Web-gLV—a GUI based interactive platform for generalized Lotka-Volterra (gLV) based modeling and simulation of microbial populations. The tool can be used to generate the mathematical models with automatic estimation of parameters and use them to predict future trajectories using numerical simulations. We also demonstrate the utility of our tool on few publicly available datasets. The case studies demonstrate the ease with which the current ...
Bacterial plasmids are extra-chromosomal, typically circular DNA elements that require a bacterial h...
Abstract The methods for data presentation are important in bioinformatics as data processing algor...
Input and output files of the application of our MDPbiomeGEM system (available at https://github.com...
The affordability of high throughput DNA sequencing has allowed us to explore the dynamics of microb...
The affordability of high throughput DNA sequencing has allowed us to explore the dynamics of microb...
The affordability of high throughput DNA sequencing has allowed us to explore the dynamics of microb...
Nowadays, microbial communities are frequently monitored over long periods of time and the interacti...
Realization of the importance of microbiome studies, coupled with the decreasing sequencing cost, ha...
International audienceSimulation of genomic data is a key tool in population genetics, yet, to date,...
Abstract Microbial ecosystem modeling is complicated by the large number of unknown parameters and t...
Post-doctoral Researcher Guilhem Sommeria-Klein at the Academy of Finland is developing mathematical...
Bacteria can exchange genetic material, or acquire genes found in the environment. This process, gen...
Motivation: Microbial genomes undergo evolutionary processes such as gene family expansion and contr...
Bacteria are some of the most ubiquitous, simple and fastest evolving life forms in the planet, yet ...
Microorganisms in nature form diverse communities that dynamically change in structure and function ...
Bacterial plasmids are extra-chromosomal, typically circular DNA elements that require a bacterial h...
Abstract The methods for data presentation are important in bioinformatics as data processing algor...
Input and output files of the application of our MDPbiomeGEM system (available at https://github.com...
The affordability of high throughput DNA sequencing has allowed us to explore the dynamics of microb...
The affordability of high throughput DNA sequencing has allowed us to explore the dynamics of microb...
The affordability of high throughput DNA sequencing has allowed us to explore the dynamics of microb...
Nowadays, microbial communities are frequently monitored over long periods of time and the interacti...
Realization of the importance of microbiome studies, coupled with the decreasing sequencing cost, ha...
International audienceSimulation of genomic data is a key tool in population genetics, yet, to date,...
Abstract Microbial ecosystem modeling is complicated by the large number of unknown parameters and t...
Post-doctoral Researcher Guilhem Sommeria-Klein at the Academy of Finland is developing mathematical...
Bacteria can exchange genetic material, or acquire genes found in the environment. This process, gen...
Motivation: Microbial genomes undergo evolutionary processes such as gene family expansion and contr...
Bacteria are some of the most ubiquitous, simple and fastest evolving life forms in the planet, yet ...
Microorganisms in nature form diverse communities that dynamically change in structure and function ...
Bacterial plasmids are extra-chromosomal, typically circular DNA elements that require a bacterial h...
Abstract The methods for data presentation are important in bioinformatics as data processing algor...
Input and output files of the application of our MDPbiomeGEM system (available at https://github.com...