Ask
Search
My library
ORKG

ORKG Ask

Our mission is to organize scholarly knowledge and make it accessible to humans and machines.

About

About ORKG Ask
Report issue
Statistics
Contact

Legal

Terms of use
Data protection (sheet)
Imprint
Accessibility
License

Technical

We
open source
System status
Changelog
Frontend: v1.41.0
Backend: v1.13.4

We use cookies to provide a better user experience.

Data Protection

Coefficients of variation observed for genes expressing at a minimum level of 10, 50, or 200 counts.

Christy L. Trejo (6392345)
Miloš Babić (6392348)
Elliot Imler (6392351)
Migdalia Gonzalez (6392354)
Sergei I. Bibikov (6392357)
Peter J. Shepard (701801)
Harper C. VanSteenhouse (4047664)
Joanne M. Yeakley (4047661)
Bruce E. Seligmann (4047670)

Publication date

February 2019

DOI

10.1371/journal.pone.0212031.t001

Publisher

Public Library of Science (PLoS)

Abstract

Coefficients of variation observed for genes expressing at a minimum level of 10, 50, or 200 counts.</p

Extracted data

Related items

Number of differently expressed genes with a cut-off of q = 10% in all comparisons of worker phenotypes.

Siri-Christine Seehuus (441636)
Simon Taylor (441637)
Kjell Petersen (69736)
Randi M. Aamodt (441638)

August 2013

<p>Number of differently expressed genes with a cut-off of q = 10% in all comparisons of worker phen...

Graph of ratio of the number of sets in which a gene has a coefficient of variation (CV) less than a threshold (t), to the number of sets in which the gene is observed.

Tulin Ersahin (103389)
Levent Carkacioglu (544556)
Tolga Can (544557)
Ozlen Konu (412799)
Volkan Atalay (242850)
Rengul Cetin-Atalay (103391)

March 2014

<p>Graphs were plotted for CV value thresholds t = 0.5 t = 0.1, t = 0.05 and t = 0.01. Percentage of...

Determination of the optimal number of reference genes for normalization of qPCR data in each experimental condition.

Jannatul Ferdous (657785)
Yuan Li (67017)
Nicolas Reid (707617)
Peter Langridge (56520)
Bu-Jun Shi (146331)
Penny J. Tricker (707618)

March 2015

<p>If the V (variation) value is below 0.15, the addition of a further reference gene does not resul...

Determination of the number of genes required to calculate a hypothetical normalization factor.

Francisco Amil-Ruiz (441299)
José Garrido-Gala (441300)
Rosario Blanco-Portales (441301)
Kevin M. Folta (204538)
Juan Muñoz-Blanco (5172140)
José L. Caballero (441302)

August 2013

<p>Pairwise variation (Vn/n+1) analysis was carried out to determine the number of reference genes r...

Biological coefficient of variation of samples S1, S2 and S3 as estimated by TopHat/HTSeq/edgeR software.

Antheia Kissopoulou (495666)
Jon Jonasson (495667)
Tomas L. Lindahl (495668)
Abdimajid Osman (495669)

December 2013

<p>As expected the more highly expressed genes show much lower dispersion estimates than the mean va...

Mean, range and coefficient of variation (CV %) of genotypes for eight quantitative traits.

Naflath T. V. (14227497)
Rajendra Prasad S. (14227500)
Ravikumar R. L. (14227503)

December 2022

Mean, range and coefficient of variation (CV %) of genotypes for eight quantitative traits.</p

Differentially expressed genes between the 0.1 MPa, 10 MPa, and 26 MPa growth conditions (adjusted P value<0.1).

Amira Amrani (629232)
Aurélie Bergon (234906)
Hélène Holota (629233)
Christian Tamburini (278059)
Marc Garel (278058)
Bernard Ollivier (278062)
Jean Imbert (224893)
Alain Dolla (278063)
Nathalie Pradel (209632)

September 2014

<p>Log2-fold change is indicated <i>vs.</i> the average counts over all six samples.</p><p>Different...

Gene coefficients.

Karthik Devarajan (215762)

February 2013

<p>(A) Histogram of gene coefficients, metagene 1. (B) Histogram of gene coefficients, metagene 2. (...

Determination of the optimal number of reference genes.

Xiaoyang Zhu (138556)
Xueping Li (138564)
Weixin Chen (138569)
Jianye Chen (138573)
Wangjin Lu (138579)
Lei Chen (54296)
Danwen Fu (138584)

August 2012

<p>Pair-wise variation (V) calculated by geNorm to determine the minimum number of reference genes f...

Number of genes assigned to functional categories with different confidence thresholds.

Raul Torrieri (128315)
Francislon S. Oliveira (128318)
Guilherme Oliveira (128322)
Roney S. Coimbra (128325)

October 2012

<p>Number of genes assigned to functional categories with different confidence thresholds.</p

The coefficient of variation (CV %) of candidate reference genes from <i>T</i>. <i>vaginalis</i> under three distinct sets.

Odelta dos Santos (798581)
Graziela de Vargas Rigo (798582)
Amanda Piccoli Frasson (798583)
Alexandre José Macedo (798584)
Tiana Tasca (798585)

September 2015

<p>The coefficient of variation (CV %) of candidate reference genes from <i>T</i>. <i>vaginalis</i> ...

Determination of the optimal number of control genes for normalization.

Andre Baumann (780982)
Rüdiger Lehmann (780983)
Annika Beckert (780984)
Andreas Vilcinskas (68058)
Zdeněk Franta (83127)

August 2015

<p>Pairwise variation (V<sub>n/n+1</sub>) analysis between the normalization factors NF<sub>n</sub> ...

Variation of SNP influence on the levels of transcriptional activation and gene products.

Vitaly V. Gursky (266183)
Konstantin N. Kozlov (538951)
Ivan V. Kulakovskiy (613837)
Asif Zubair (3362261)
Paul Marjoram (28920)
David S. Lawrie (416602)
Sergey V. Nuzhdin (90060)
Maria G. Samsonova (538953)

September 2017

<p>Coefficient of variation (the standard deviation to the mean ratio) for different subsets of the ...

Pairwise variation analyses of candidate reference genes in different sample sets.

Qiusheng Kong (515162)
Jingxian Yuan (515163)
Lingyun Gao (529401)
Shuang Zhao (484057)
Wei Jiang (14986)
Yuan Huang (79836)
Zhilong Bie (515166)

February 2014

<p>Pairwise variation (V) was calculated by geNorm to determine the minimum number of reference gene...

Pairwise variation calculated by geNorm to determine the minimum number of reference genes required for accurate normalization in each experimental set.

Varinder Singh (361039)
Sunil C. Kaul (186002)
Renu Wadhwa (185998)
Pratap Kumar Pati (701890)

March 2015

<p>The cut off value is 0.15, below which the inclusion of an additional reference gene is not requi...

Number of differently expressed genes with a cut-off of q = 10% in all comparisons of worker phenotypes.

Siri-Christine Seehuus (441636)
Simon Taylor (441637)
Kjell Petersen (69736)
Randi M. Aamodt (441638)

August 2013

<p>Number of differently expressed genes with a cut-off of q = 10% in all comparisons of worker phen...

Graph of ratio of the number of sets in which a gene has a coefficient of variation (CV) less than a threshold (t), to the number of sets in which the gene is observed.

Tulin Ersahin (103389)
Levent Carkacioglu (544556)
Tolga Can (544557)
Ozlen Konu (412799)
Volkan Atalay (242850)
Rengul Cetin-Atalay (103391)

March 2014

<p>Graphs were plotted for CV value thresholds t = 0.5 t = 0.1, t = 0.05 and t = 0.01. Percentage of...

Determination of the optimal number of reference genes for normalization of qPCR data in each experimental condition.

Jannatul Ferdous (657785)
Yuan Li (67017)
Nicolas Reid (707617)
Peter Langridge (56520)
Bu-Jun Shi (146331)
Penny J. Tricker (707618)

March 2015

<p>If the V (variation) value is below 0.15, the addition of a further reference gene does not resul...

Determination of the number of genes required to calculate a hypothetical normalization factor.

Francisco Amil-Ruiz (441299)
José Garrido-Gala (441300)
Rosario Blanco-Portales (441301)
Kevin M. Folta (204538)
Juan Muñoz-Blanco (5172140)
José L. Caballero (441302)

August 2013

<p>Pairwise variation (Vn/n+1) analysis was carried out to determine the number of reference genes r...

Biological coefficient of variation of samples S1, S2 and S3 as estimated by TopHat/HTSeq/edgeR software.

Antheia Kissopoulou (495666)
Jon Jonasson (495667)
Tomas L. Lindahl (495668)
Abdimajid Osman (495669)

December 2013

<p>As expected the more highly expressed genes show much lower dispersion estimates than the mean va...

Mean, range and coefficient of variation (CV %) of genotypes for eight quantitative traits.

Naflath T. V. (14227497)
Rajendra Prasad S. (14227500)
Ravikumar R. L. (14227503)

December 2022

Mean, range and coefficient of variation (CV %) of genotypes for eight quantitative traits.</p

Differentially expressed genes between the 0.1 MPa, 10 MPa, and 26 MPa growth conditions (adjusted P value<0.1).

Amira Amrani (629232)
Aurélie Bergon (234906)
Hélène Holota (629233)
Christian Tamburini (278059)
Marc Garel (278058)
Bernard Ollivier (278062)
Jean Imbert (224893)
Alain Dolla (278063)
Nathalie Pradel (209632)

September 2014

<p>Log2-fold change is indicated <i>vs.</i> the average counts over all six samples.</p><p>Different...

Gene coefficients.

Karthik Devarajan (215762)

February 2013

<p>(A) Histogram of gene coefficients, metagene 1. (B) Histogram of gene coefficients, metagene 2. (...

Determination of the optimal number of reference genes.

Xiaoyang Zhu (138556)
Xueping Li (138564)
Weixin Chen (138569)
Jianye Chen (138573)
Wangjin Lu (138579)
Lei Chen (54296)
Danwen Fu (138584)

August 2012

<p>Pair-wise variation (V) calculated by geNorm to determine the minimum number of reference genes f...

Number of genes assigned to functional categories with different confidence thresholds.

Raul Torrieri (128315)
Francislon S. Oliveira (128318)
Guilherme Oliveira (128322)
Roney S. Coimbra (128325)

October 2012

<p>Number of genes assigned to functional categories with different confidence thresholds.</p

The coefficient of variation (CV %) of candidate reference genes from <i>T</i>. <i>vaginalis</i> under three distinct sets.

Odelta dos Santos (798581)
Graziela de Vargas Rigo (798582)
Amanda Piccoli Frasson (798583)
Alexandre José Macedo (798584)
Tiana Tasca (798585)

September 2015

<p>The coefficient of variation (CV %) of candidate reference genes from <i>T</i>. <i>vaginalis</i> ...

Determination of the optimal number of control genes for normalization.

Andre Baumann (780982)
Rüdiger Lehmann (780983)
Annika Beckert (780984)
Andreas Vilcinskas (68058)
Zdeněk Franta (83127)

August 2015

<p>Pairwise variation (V<sub>n/n+1</sub>) analysis between the normalization factors NF<sub>n</sub> ...

Variation of SNP influence on the levels of transcriptional activation and gene products.

Vitaly V. Gursky (266183)
Konstantin N. Kozlov (538951)
Ivan V. Kulakovskiy (613837)
Asif Zubair (3362261)
Paul Marjoram (28920)
David S. Lawrie (416602)
Sergey V. Nuzhdin (90060)
Maria G. Samsonova (538953)

September 2017

<p>Coefficient of variation (the standard deviation to the mean ratio) for different subsets of the ...

Pairwise variation analyses of candidate reference genes in different sample sets.

Qiusheng Kong (515162)
Jingxian Yuan (515163)
Lingyun Gao (529401)
Shuang Zhao (484057)
Wei Jiang (14986)
Yuan Huang (79836)
Zhilong Bie (515166)

February 2014

<p>Pairwise variation (V) was calculated by geNorm to determine the minimum number of reference gene...

Pairwise variation calculated by geNorm to determine the minimum number of reference genes required for accurate normalization in each experimental set.

Varinder Singh (361039)
Sunil C. Kaul (186002)
Renu Wadhwa (185998)
Pratap Kumar Pati (701890)

March 2015

<p>The cut off value is 0.15, below which the inclusion of an additional reference gene is not requi...

Number of differently expressed genes with a cut-off of q = 10% in all comparisons of worker phenotypes.

Siri-Christine Seehuus (441636)
Simon Taylor (441637)
Kjell Petersen (69736)
Randi M. Aamodt (441638)

August 2013

<p>Number of differently expressed genes with a cut-off of q = 10% in all comparisons of worker phen...

Graph of ratio of the number of sets in which a gene has a coefficient of variation (CV) less than a threshold (t), to the number of sets in which the gene is observed.

Tulin Ersahin (103389)
Levent Carkacioglu (544556)
Tolga Can (544557)
Ozlen Konu (412799)
Volkan Atalay (242850)
Rengul Cetin-Atalay (103391)

March 2014

<p>Graphs were plotted for CV value thresholds t = 0.5 t = 0.1, t = 0.05 and t = 0.01. Percentage of...

Determination of the optimal number of reference genes for normalization of qPCR data in each experimental condition.

Jannatul Ferdous (657785)
Yuan Li (67017)
Nicolas Reid (707617)
Peter Langridge (56520)
Bu-Jun Shi (146331)
Penny J. Tricker (707618)

March 2015

<p>If the V (variation) value is below 0.15, the addition of a further reference gene does not resul...