Table S15. Characterization and functional distribution of genes found to be differentially regulated between the R and S line infections. (A) DEGs at 24 hpi (B) DEGs at 96 hpi. P-value, Bonferroni correction, and FDR are all given, but only samples with a Bonferroni correction < 0.05 were considered in the analysis. (XLSX 59 kb
Table S1. Primers used in the validation of RNA sequencing data. All primers were either designed fo...
Table S17. Key describing the relationship between version one [23] and version two [60] gene loci a...
Figure S1. Graph detailing select categories of genes that were upregulated either EARLY (Orange) or...
Table S3. Characterization and functional distribution of genes found to be differentially regulated...
Table S14. Timepoint comparison of R and S lines. LogFC>1 indicates higher expression in the R line ...
Table S2. All genes differentially expressed over the progression of S line infection. DEGs were gen...
Table S4. All genes found to be differentially expressed over the course of infection (FDR<0.05) whi...
Table S10. All putatively assigned transcription factors which were differentially regulated at some...
Table S7. All putatively assigned secondary metabolite synthesis genes which were upregulated at som...
: Table S8. All putatively assigned cytochrome P450 genes which were upregulated at some timepoint o...
Table S6. All cell wall degrading and related hydrolytic enzymes upregulated at some timepoint of th...
Table S13. All putatively assigned ROS scavenging enzymes which were differentially regulated at som...
Table S16. Comparison of S. sclerotiorum hydrolytic enzymes upregulated during infection of either s...
: Table S9. All putatively assigned transporter proteins which were upregulated at some timepoint of...
Table S11. Raw RPKM value for S v C timepoint comparison (A) 24 hpi (B) 48 hpi (C) 96 hpi (XLSX 4311...
Table S1. Primers used in the validation of RNA sequencing data. All primers were either designed fo...
Table S17. Key describing the relationship between version one [23] and version two [60] gene loci a...
Figure S1. Graph detailing select categories of genes that were upregulated either EARLY (Orange) or...
Table S3. Characterization and functional distribution of genes found to be differentially regulated...
Table S14. Timepoint comparison of R and S lines. LogFC>1 indicates higher expression in the R line ...
Table S2. All genes differentially expressed over the progression of S line infection. DEGs were gen...
Table S4. All genes found to be differentially expressed over the course of infection (FDR<0.05) whi...
Table S10. All putatively assigned transcription factors which were differentially regulated at some...
Table S7. All putatively assigned secondary metabolite synthesis genes which were upregulated at som...
: Table S8. All putatively assigned cytochrome P450 genes which were upregulated at some timepoint o...
Table S6. All cell wall degrading and related hydrolytic enzymes upregulated at some timepoint of th...
Table S13. All putatively assigned ROS scavenging enzymes which were differentially regulated at som...
Table S16. Comparison of S. sclerotiorum hydrolytic enzymes upregulated during infection of either s...
: Table S9. All putatively assigned transporter proteins which were upregulated at some timepoint of...
Table S11. Raw RPKM value for S v C timepoint comparison (A) 24 hpi (B) 48 hpi (C) 96 hpi (XLSX 4311...
Table S1. Primers used in the validation of RNA sequencing data. All primers were either designed fo...
Table S17. Key describing the relationship between version one [23] and version two [60] gene loci a...
Figure S1. Graph detailing select categories of genes that were upregulated either EARLY (Orange) or...