R markdown input file containing alpha diversity estimates (Effective number of species–Jost1) calculated from the non-normalised and rarefied OTU tables in USEARCH for all sampled individual
Analyses were performed using the 97% identity level OTU table rarefied to 3774 sequences per sample...
<p>Species diversity is represented on a local scale (for all samples) at a 99% similarity level (pa...
1<p>Diversity Estimators Abbreviations: Abundance-based Coverage Estimator (ACE), Chao’s species ric...
R markdown input file containing alpha diversity estimates (Effective number of species–Jost1) calcu...
R markdown input file containing alpha diversity estimates (Effective number of species–Jost1) calcu...
R markdown input file containing alpha diversity estimates (Effective number of species–Jost1) calcu...
R code: statistical analysis (ANOVA) on collated alpha diversity metrics (phylogenetic diversity, ri...
<p>Rarefaction curve showing number of sequences generated versus the number of operational taxonomi...
cited By 27International audienceSummary: Novel algorithms have been recently developed to estimate ...
<p>Alpha diversity indices, species count and species richness (Chao1 and standard error).</p
R script that rarefies the raw OTU table 100 times to calculate microbiome diversity for individual...
<p>(A) Rank abundance curves. The vertical axis displays OTU relative abundance on a logarithmic sca...
(A) Box plot comparing number of observed operational taxonomic units (OTUs) across kits. (B) Box pl...
<p>Estimates of alpha diversity for the fresh, −80°C frozen and snap frozen samples.</p
R code that tests for relationships between alpha diversity measures and treatment. Inputs are colla...
Analyses were performed using the 97% identity level OTU table rarefied to 3774 sequences per sample...
<p>Species diversity is represented on a local scale (for all samples) at a 99% similarity level (pa...
1<p>Diversity Estimators Abbreviations: Abundance-based Coverage Estimator (ACE), Chao’s species ric...
R markdown input file containing alpha diversity estimates (Effective number of species–Jost1) calcu...
R markdown input file containing alpha diversity estimates (Effective number of species–Jost1) calcu...
R markdown input file containing alpha diversity estimates (Effective number of species–Jost1) calcu...
R code: statistical analysis (ANOVA) on collated alpha diversity metrics (phylogenetic diversity, ri...
<p>Rarefaction curve showing number of sequences generated versus the number of operational taxonomi...
cited By 27International audienceSummary: Novel algorithms have been recently developed to estimate ...
<p>Alpha diversity indices, species count and species richness (Chao1 and standard error).</p
R script that rarefies the raw OTU table 100 times to calculate microbiome diversity for individual...
<p>(A) Rank abundance curves. The vertical axis displays OTU relative abundance on a logarithmic sca...
(A) Box plot comparing number of observed operational taxonomic units (OTUs) across kits. (B) Box pl...
<p>Estimates of alpha diversity for the fresh, −80°C frozen and snap frozen samples.</p
R code that tests for relationships between alpha diversity measures and treatment. Inputs are colla...
Analyses were performed using the 97% identity level OTU table rarefied to 3774 sequences per sample...
<p>Species diversity is represented on a local scale (for all samples) at a 99% similarity level (pa...
1<p>Diversity Estimators Abbreviations: Abundance-based Coverage Estimator (ACE), Chao’s species ric...