Additional file 2: of Oxygen induces the expression of invasion and stress response genes in the anaerobic salmon parasite Spironucleus salmonicida

Figure S1. Expression patterns of various S. salmonicida gene sets in OXY and NAO cells. (A) All S. salmonicida non-identical genes. S. salmonicida genes encoding hypothetical proteins with (B) homologues in other organisms, (C) a subset of (B) homologues found only in S. salmonicida and G. intestinalis, and (D) no homologues on the Genbank non-redundant database (2014). Each UpSetR graph represents the number of upregulated, downregulated, or not significant/no change (n.s./n.c.) with horizontal bars in each set as indicated. Points represent the comparison for each vertical bar with the total number of genes corresponding to each comparison are shown on top of the bar. For example, in panel A, there were 674 and 856 genes downregulated in OXY and NAO cells respectively, and 225 of these were downregulated in both conditions. (TIF 737 kb