Additional file 2: of Discovery and validation of DNA methylation markers for overall survival prognosis in patients with thymic epithelial tumors

Additional file 4: of Roadmap of DNA methylation in breast cancer identifies novel prognostic biomarkers

Bernardo de Almeida (6456320)
Joana Apolónio (6456323)
Alexandra Binnie (6456329)
Pedro Castelo-Branco (6456332)

March 2019

Table S3. List of CpGs located in genes that are differentially expressed between breast cancer and ...

Additional file 2 of Characterizing DNA methylation signatures and their potential functional roles in Merkel cell carcinoma

Hemant Gujar (4952221)
Arjun Mehta (807381)
Hong-Tao Li (277766)
Yvonne C. Tsai (11282782)
Xiangning Qiu (240807)
Daniel J. Weisenberger (10142945)
Miriam Galvonas Jasiulionis (11110287)
Gino K. In (11282785)
Gangning Liang (174746)

August 2021

Additional file 2. Supplemental Table 1: Top 10 differentially methylated probes based on MCPyV and ...

Additional file 1: of DNA methylation signatures of breast cancer in peripheral T-cells

Surabhi Parashar (5237711)
David Cheishvili (554749)
Niaz Mahmood (5237702)
Ani Arakelian (5237708)
Imrana Tanvir (5237717)
Haseeb Khan (5237705)
Richard Kremer (5237714)
Catalin Mihalcioiu (3994973)
Moshe Szyf (228712)
Shafaat Rabbani (5237720)

May 2018

Table S1. Clinical table of normal individuals and cancer patients. Table S2. Primer sequences. Tabl...

Additional file 4: of Discovery and validation of DNA methylation markers for overall survival prognosis in patients with thymic epithelial tumors

Songlin Li (351178)
Yuan Yuan (25702)
He Xiao (291662)
Jiajia Dai (3592736)
Yunfei Ye (6423998)
Qin Zhang (58638)
Zhimin Zhang (408803)
Yuhan Jiang (6424001)
Jia Luo (291145)
Jing Hu (41899)
Chuan Chen (379557)
Ge Wang (56838)

March 2019

Figure S1. A heatmap showing methylation profiles of 542 significantly expressed methylation sites w...

Additional file 1: of Discovery and validation of DNA methylation markers for overall survival prognosis in patients with thymic epithelial tumors

Songlin Li (351178)
Yuan Yuan (25702)
He Xiao (291662)
Jiajia Dai (3592736)
Yunfei Ye (6423998)
Qin Zhang (58638)
Zhimin Zhang (408803)
Yuhan Jiang (6424001)
Jia Luo (291145)
Jing Hu (41899)
Chuan Chen (379557)
Ge Wang (56838)

March 2019

Table S2. List of significantly expressed methylation probes. In this table, the “mean_AB” and “mean...

Additional file 8: of Discovery and validation of DNA methylation markers for overall survival prognosis in patients with thymic epithelial tumors

Songlin Li (351178)
Yuan Yuan (25702)
He Xiao (291662)
Jiajia Dai (3592736)
Yunfei Ye (6423998)
Qin Zhang (58638)
Zhimin Zhang (408803)
Yuhan Jiang (6424001)
Jia Luo (291145)
Jing Hu (41899)
Chuan Chen (379557)
Ge Wang (56838)

March 2019

Table S1. List of primers used for pyrosequencing and quantitative RT-PCR. (XLSX 10 kb

Additional file 7: of Discovery and validation of DNA methylation markers for overall survival prognosis in patients with thymic epithelial tumors

Songlin Li (351178)
Yuan Yuan (25702)
He Xiao (291662)
Jiajia Dai (3592736)
Yunfei Ye (6423998)
Qin Zhang (58638)
Zhimin Zhang (408803)
Yuhan Jiang (6424001)
Jia Luo (291145)
Jing Hu (41899)
Chuan Chen (379557)
Ge Wang (56838)

March 2019

Figures S3. Scatter plots showing relationship between mRNA expression levels and methylation in fou...

Additional file 6: of Discovery and validation of DNA methylation markers for overall survival prognosis in patients with thymic epithelial tumors

Songlin Li (351178)
Yuan Yuan (25702)
He Xiao (291662)
Jiajia Dai (3592736)
Yunfei Ye (6423998)
Qin Zhang (58638)
Zhimin Zhang (408803)
Yuhan Jiang (6424001)
Jia Luo (291145)
Jing Hu (41899)
Chuan Chen (379557)
Ge Wang (56838)

March 2019

Figures S2. Box plots showing the distribution of beta values in cg05784862(KSR1), cg07154254(ELF3),...

Additional file 3: of Discovery and validation of DNA methylation markers for overall survival prognosis in patients with thymic epithelial tumors

Songlin Li (351178)
Yuan Yuan (25702)
He Xiao (291662)
Jiajia Dai (3592736)
Yunfei Ye (6423998)
Qin Zhang (58638)
Zhimin Zhang (408803)
Yuhan Jiang (6424001)
Jia Luo (291145)
Jing Hu (41899)
Chuan Chen (379557)
Ge Wang (56838)

March 2019

Table S4. The list of genes transcriptionally affected by methylation of significantly expressed met...

Additional file 5: of Discovery and validation of DNA methylation markers for overall survival prognosis in patients with thymic epithelial tumors

Songlin Li (351178)
Yuan Yuan (25702)
He Xiao (291662)
Jiajia Dai (3592736)
Yunfei Ye (6423998)
Qin Zhang (58638)
Zhimin Zhang (408803)
Yuhan Jiang (6424001)
Jia Luo (291145)
Jing Hu (41899)
Chuan Chen (379557)
Ge Wang (56838)

March 2019

Table S5. Summary of results from univariate and multivariable Cox regression for overall survival o...

Additional file 1: of Decreased methylation in the SNAI2 and ADAM23 genes associated with de-differentiation and haematogenous dissemination in breast cancers

Lenka Kalinkova (5725769)
Iveta Zmetakova (5725772)
Bozena Smolkova (5725775)
Gabriel Minarik (2512540)
Tatiana Sedlackova (5725778)
Viera Horvathova Kajabova (5725781)
Zuzana Cierna (5725784)
Michal Mego (774807)
Ivana Fridrichova (5725787)

September 2018

DNA methylation levels in various types of samples from BC patients with different histological grad...

Additional file 1: of Comparing diagnostic and prognostic performance of two-gene promoter methylation panels in tissue biopsies and urines of prostate cancer patients

Catarina Moreira-Barbosa (5907095)
Daniela Barros-Silva (4922425)
Pedro Costa-Pinheiro (816456)
Jorge Torres-Ferreira (3764845)
Vera Constâncio (5907098)
Rui Freitas (3764833)
Jorge Oliveira (33493)
Luís Antunes (701921)
Rui Henrique (33490)
Carmen Jerónimo (33496)

October 2018

Table S1. Primer sequences for β-Actin, miR-34b/c, and miR-193b (panel #1). Table S2. Scorpion prime...

Additional file 2: Table S1. of Targeted bisulfite sequencing identified a panel of DNA methylation-based biomarkers for esophageal squamous cell carcinoma (ESCC)

Weilin Pu (4690006)
Chenji Wang (408890)
Sidi Chen (127044)
Dunmei Zhao (3927128)
Yinghui Zhou (344457)
Yanyun Ma (339117)
Ying Wang (11406)
Caihua Li (4690009)
Zebin Huang (438392)
Li Jin (40265)
Shicheng Guo (171219)
Jiucun Wang (102740)
Minghua Wang (37199)

December 2017

The methylation status of the five CpG sites in the GEO dataset and normal CD4+ and CD8+ T cells. Ta...

Additional file 1: of Roadmap of DNA methylation in breast cancer identifies novel prognostic biomarkers

Bernardo de Almeida (6456320)
Joana Apolónio (6456323)
Alexandra Binnie (6456329)
Pedro Castelo-Branco (6456332)

March 2019

Table S1. List of CpGs differently methylated between breast cancer and matched-normal samples. (XLS...

Additional file 5: of Roadmap of DNA methylation in breast cancer identifies novel prognostic biomarkers

Bernardo de Almeida (6456320)
Joana Apolónio (6456323)
Alexandra Binnie (6456329)
Pedro Castelo-Branco (6456332)

March 2019

Table S4. List of genes differently expressed between normal and tumor METABRIC samples and with con...

Additional file 4: of Roadmap of DNA methylation in breast cancer identifies novel prognostic biomarkers

Bernardo de Almeida (6456320)
Joana Apolónio (6456323)
Alexandra Binnie (6456329)
Pedro Castelo-Branco (6456332)

March 2019

Table S3. List of CpGs located in genes that are differentially expressed between breast cancer and ...

Additional file 2 of Characterizing DNA methylation signatures and their potential functional roles in Merkel cell carcinoma

Hemant Gujar (4952221)
Arjun Mehta (807381)
Hong-Tao Li (277766)
Yvonne C. Tsai (11282782)
Xiangning Qiu (240807)
Daniel J. Weisenberger (10142945)
Miriam Galvonas Jasiulionis (11110287)
Gino K. In (11282785)
Gangning Liang (174746)

August 2021

Additional file 2. Supplemental Table 1: Top 10 differentially methylated probes based on MCPyV and ...

Additional file 1: of DNA methylation signatures of breast cancer in peripheral T-cells

Surabhi Parashar (5237711)
David Cheishvili (554749)
Niaz Mahmood (5237702)
Ani Arakelian (5237708)
Imrana Tanvir (5237717)
Haseeb Khan (5237705)
Richard Kremer (5237714)
Catalin Mihalcioiu (3994973)
Moshe Szyf (228712)
Shafaat Rabbani (5237720)

May 2018

Table S1. Clinical table of normal individuals and cancer patients. Table S2. Primer sequences. Tabl...

Additional file 4: of Discovery and validation of DNA methylation markers for overall survival prognosis in patients with thymic epithelial tumors

Songlin Li (351178)
Yuan Yuan (25702)
He Xiao (291662)
Jiajia Dai (3592736)
Yunfei Ye (6423998)
Qin Zhang (58638)
Zhimin Zhang (408803)
Yuhan Jiang (6424001)
Jia Luo (291145)
Jing Hu (41899)
Chuan Chen (379557)
Ge Wang (56838)

March 2019

Figure S1. A heatmap showing methylation profiles of 542 significantly expressed methylation sites w...

Additional file 1: of Discovery and validation of DNA methylation markers for overall survival prognosis in patients with thymic epithelial tumors

Songlin Li (351178)
Yuan Yuan (25702)
He Xiao (291662)
Jiajia Dai (3592736)
Yunfei Ye (6423998)
Qin Zhang (58638)
Zhimin Zhang (408803)
Yuhan Jiang (6424001)
Jia Luo (291145)
Jing Hu (41899)
Chuan Chen (379557)
Ge Wang (56838)

March 2019

Table S2. List of significantly expressed methylation probes. In this table, the “mean_AB” and “mean...

Additional file 8: of Discovery and validation of DNA methylation markers for overall survival prognosis in patients with thymic epithelial tumors

Songlin Li (351178)
Yuan Yuan (25702)
He Xiao (291662)
Jiajia Dai (3592736)
Yunfei Ye (6423998)
Qin Zhang (58638)
Zhimin Zhang (408803)
Yuhan Jiang (6424001)
Jia Luo (291145)
Jing Hu (41899)
Chuan Chen (379557)
Ge Wang (56838)

March 2019

Table S1. List of primers used for pyrosequencing and quantitative RT-PCR. (XLSX 10 kb

Additional file 7: of Discovery and validation of DNA methylation markers for overall survival prognosis in patients with thymic epithelial tumors

Songlin Li (351178)
Yuan Yuan (25702)
He Xiao (291662)
Jiajia Dai (3592736)
Yunfei Ye (6423998)
Qin Zhang (58638)
Zhimin Zhang (408803)
Yuhan Jiang (6424001)
Jia Luo (291145)
Jing Hu (41899)
Chuan Chen (379557)
Ge Wang (56838)

March 2019

Figures S3. Scatter plots showing relationship between mRNA expression levels and methylation in fou...

Additional file 6: of Discovery and validation of DNA methylation markers for overall survival prognosis in patients with thymic epithelial tumors

Songlin Li (351178)
Yuan Yuan (25702)
He Xiao (291662)
Jiajia Dai (3592736)
Yunfei Ye (6423998)
Qin Zhang (58638)
Zhimin Zhang (408803)
Yuhan Jiang (6424001)
Jia Luo (291145)
Jing Hu (41899)
Chuan Chen (379557)
Ge Wang (56838)

March 2019

Figures S2. Box plots showing the distribution of beta values in cg05784862(KSR1), cg07154254(ELF3),...

Additional file 3: of Discovery and validation of DNA methylation markers for overall survival prognosis in patients with thymic epithelial tumors

Songlin Li (351178)
Yuan Yuan (25702)
He Xiao (291662)
Jiajia Dai (3592736)
Yunfei Ye (6423998)
Qin Zhang (58638)
Zhimin Zhang (408803)
Yuhan Jiang (6424001)
Jia Luo (291145)
Jing Hu (41899)
Chuan Chen (379557)
Ge Wang (56838)

March 2019

Table S4. The list of genes transcriptionally affected by methylation of significantly expressed met...

Additional file 5: of Discovery and validation of DNA methylation markers for overall survival prognosis in patients with thymic epithelial tumors

Songlin Li (351178)
Yuan Yuan (25702)
He Xiao (291662)
Jiajia Dai (3592736)
Yunfei Ye (6423998)
Qin Zhang (58638)
Zhimin Zhang (408803)
Yuhan Jiang (6424001)
Jia Luo (291145)
Jing Hu (41899)
Chuan Chen (379557)
Ge Wang (56838)

March 2019

Table S5. Summary of results from univariate and multivariable Cox regression for overall survival o...

Additional file 1: of Decreased methylation in the SNAI2 and ADAM23 genes associated with de-differentiation and haematogenous dissemination in breast cancers

Lenka Kalinkova (5725769)
Iveta Zmetakova (5725772)
Bozena Smolkova (5725775)
Gabriel Minarik (2512540)
Tatiana Sedlackova (5725778)
Viera Horvathova Kajabova (5725781)
Zuzana Cierna (5725784)
Michal Mego (774807)
Ivana Fridrichova (5725787)

September 2018

DNA methylation levels in various types of samples from BC patients with different histological grad...

Additional file 1: of Comparing diagnostic and prognostic performance of two-gene promoter methylation panels in tissue biopsies and urines of prostate cancer patients

Catarina Moreira-Barbosa (5907095)
Daniela Barros-Silva (4922425)
Pedro Costa-Pinheiro (816456)
Jorge Torres-Ferreira (3764845)
Vera Constâncio (5907098)
Rui Freitas (3764833)
Jorge Oliveira (33493)
Luís Antunes (701921)
Rui Henrique (33490)
Carmen Jerónimo (33496)

October 2018

Table S1. Primer sequences for β-Actin, miR-34b/c, and miR-193b (panel #1). Table S2. Scorpion prime...

Additional file 2: Table S1. of Targeted bisulfite sequencing identified a panel of DNA methylation-based biomarkers for esophageal squamous cell carcinoma (ESCC)

Weilin Pu (4690006)
Chenji Wang (408890)
Sidi Chen (127044)
Dunmei Zhao (3927128)
Yinghui Zhou (344457)
Yanyun Ma (339117)
Ying Wang (11406)
Caihua Li (4690009)
Zebin Huang (438392)
Li Jin (40265)
Shicheng Guo (171219)
Jiucun Wang (102740)
Minghua Wang (37199)

December 2017

The methylation status of the five CpG sites in the GEO dataset and normal CD4+ and CD8+ T cells. Ta...

Additional file 1: of Roadmap of DNA methylation in breast cancer identifies novel prognostic biomarkers

Bernardo de Almeida (6456320)
Joana Apolónio (6456323)
Alexandra Binnie (6456329)
Pedro Castelo-Branco (6456332)

March 2019

Table S1. List of CpGs differently methylated between breast cancer and matched-normal samples. (XLS...

Additional file 5: of Roadmap of DNA methylation in breast cancer identifies novel prognostic biomarkers

Bernardo de Almeida (6456320)
Joana Apolónio (6456323)
Alexandra Binnie (6456329)
Pedro Castelo-Branco (6456332)

March 2019

Table S4. List of genes differently expressed between normal and tumor METABRIC samples and with con...

Additional file 4: of Roadmap of DNA methylation in breast cancer identifies novel prognostic biomarkers

Bernardo de Almeida (6456320)
Joana Apolónio (6456323)
Alexandra Binnie (6456329)
Pedro Castelo-Branco (6456332)

March 2019

Table S3. List of CpGs located in genes that are differentially expressed between breast cancer and ...

Additional file 2 of Characterizing DNA methylation signatures and their potential functional roles in Merkel cell carcinoma

Hemant Gujar (4952221)
Arjun Mehta (807381)
Hong-Tao Li (277766)
Yvonne C. Tsai (11282782)
Xiangning Qiu (240807)
Daniel J. Weisenberger (10142945)
Miriam Galvonas Jasiulionis (11110287)
Gino K. In (11282785)
Gangning Liang (174746)

August 2021

Additional file 2. Supplemental Table 1: Top 10 differentially methylated probes based on MCPyV and ...

Additional file 1: of DNA methylation signatures of breast cancer in peripheral T-cells

Surabhi Parashar (5237711)
David Cheishvili (554749)
Niaz Mahmood (5237702)
Ani Arakelian (5237708)
Imrana Tanvir (5237717)
Haseeb Khan (5237705)
Richard Kremer (5237714)
Catalin Mihalcioiu (3994973)
Moshe Szyf (228712)
Shafaat Rabbani (5237720)

May 2018

Table S1. Clinical table of normal individuals and cancer patients. Table S2. Primer sequences. Tabl...

Additional file 2: of Discovery and validation of DNA methylation markers for overall survival prognosis in patients with thymic epithelial tumors

Abstract

Extracted data

Additional file 2: of Discovery and validation of DNA methylation markers for overall survival prognosis in patients with thymic epithelial tumors

Abstract

Extracted data

Related items

Related items