Additional file 7: of In silico analysis of fungal small RNA accumulation reveals putative plant mRNA targets in the symbiosis between an arbuscular mycorrhizal fungus and its host plant

Table_4_Identification of Populus Small RNAs Responsive to Mutualistic Interactions With Mycorrhizal Fungi, Laccaria bicolor and Rhizophagus irregularis.DOCX

Ritesh Mewalal (2547931)
Hengfu Yin (5572028)
Rongbin Hu (583896)
Sara Jawdy (3533078)
Patrice Vion (6473750)
Gerald A. Tuskan (137746)
François Le Tacon (144820)
Jessy L. Labbé (137733)
Xiaohan Yang (430728)

March 2019

Ecto- and endo-mycorrhizal colonization of Populus roots have a positive impact on the overall tree ...

Table_5_Identification of Populus Small RNAs Responsive to Mutualistic Interactions With Mycorrhizal Fungi, Laccaria bicolor and Rhizophagus irregularis.DOCX

Ritesh Mewalal (2547931)
Hengfu Yin (5572028)
Rongbin Hu (583896)
Sara Jawdy (3533078)
Patrice Vion (6473750)
Gerald A. Tuskan (137746)
François Le Tacon (144820)
Jessy L. Labbé (137733)
Xiaohan Yang (430728)

March 2019

Ecto- and endo-mycorrhizal colonization of Populus roots have a positive impact on the overall tree ...

Table_1_Identification of Populus Small RNAs Responsive to Mutualistic Interactions With Mycorrhizal Fungi, Laccaria bicolor and Rhizophagus irregularis.DOCX

Ritesh Mewalal (2547931)
Hengfu Yin (5572028)
Rongbin Hu (583896)
Sara Jawdy (3533078)
Patrice Vion (6473750)
Gerald A. Tuskan (137746)
François Le Tacon (144820)
Jessy L. Labbé (137733)
Xiaohan Yang (430728)

March 2019

Ecto- and endo-mycorrhizal colonization of Populus roots have a positive impact on the overall tree ...

Additional file 6: of In silico analysis of fungal small RNA accumulation reveals putative plant mRNA targets in the symbiosis between an arbuscular mycorrhizal fungus and its host plant

Alessandro Silvestri (2864699)
Valentina Fiorilli (6424091)
Laura Miozzi (92798)
Gian Accotto (6424100)
Massimo Turina (3196788)
Luisa Lanfranco (6424106)

March 2019

Results of Mtr-miRNA – Mtr-mRNA target prediction performed with sPARTA. We added the description of...

Additional file 5: of In silico analysis of fungal small RNA accumulation reveals putative plant mRNA targets in the symbiosis between an arbuscular mycorrhizal fungus and its host plant

Alessandro Silvestri (2864699)
Valentina Fiorilli (6424091)
Laura Miozzi (92798)
Gian Accotto (6424100)
Massimo Turina (3196788)
Luisa Lanfranco (6424106)

March 2019

Results of Rir-sRNA – Mtr-mRNA target prediction performed with sPARTA. We added at the filtered sof...

Additional file 8: of In silico analysis of fungal small RNA accumulation reveals putative plant mRNA targets in the symbiosis between an arbuscular mycorrhizal fungus and its host plant

Alessandro Silvestri (2864699)
Valentina Fiorilli (6424091)
Laura Miozzi (92798)
Gian Accotto (6424100)
Massimo Turina (3196788)
Luisa Lanfranco (6424106)

March 2019

Results of DE analysis of sRNA reads originated from Mtr-mRNAs for identification of mycorrhizal ind...

Additional file 4: of In silico analysis of fungal small RNA accumulation reveals putative plant mRNA targets in the symbiosis between an arbuscular mycorrhizal fungus and its host plant

Alessandro Silvestri (2864699)
Valentina Fiorilli (6424091)
Laura Miozzi (92798)
Gian Accotto (6424100)
Massimo Turina (3196788)
Luisa Lanfranco (6424106)

March 2019

Characterization of sRNA-generating loci. For each of the predicted 2131 sRNA-generating loci we rep...

Additional file 3: of In silico analysis of fungal small RNA accumulation reveals putative plant mRNA targets in the symbiosis between an arbuscular mycorrhizal fungus and its host plant

Alessandro Silvestri (2864699)
Valentina Fiorilli (6424091)
Laura Miozzi (92798)
Gian Accotto (6424100)
Massimo Turina (3196788)
Luisa Lanfranco (6424106)

March 2019

Number of sRNA reads after each filtering step and RFAM families IDs (version 12.0) used for rRNA, t...

Additional file 2: of In silico analysis of fungal small RNA accumulation reveals putative plant mRNA targets in the symbiosis between an arbuscular mycorrhizal fungus and its host plant

Alessandro Silvestri (2864699)
Valentina Fiorilli (6424091)
Laura Miozzi (92798)
Gian Accotto (6424100)
Massimo Turina (3196788)
Luisa Lanfranco (6424106)

March 2019

In silico expression analysis of AGO-like, RdRp and DCL identified in R. irregularis. For each seque...

In silico analysis of fungal small RNA accumulation reveals putative plant mRNA targets in the symbiosis between an arbuscular mycorrhizal fungus and its host plant

Alessandro Silvestri
Valentina Fiorilli
Laura Miozzi
Gian Paolo Accotto
Massimo Turina
Luisa Lanfranco

March 2019

Abstract Background Small RNAs (sRNAs) are short non-coding RNA molecules (20–30 nt) that regulate g...

Additional file 1: of In silico analysis of fungal small RNA accumulation reveals putative plant mRNA targets in the symbiosis between an arbuscular mycorrhizal fungus and its host plant

Alessandro Silvestri (2864699)
Valentina Fiorilli (6424091)
Laura Miozzi (92798)
Gian Accotto (6424100)
Massimo Turina (3196788)
Luisa Lanfranco (6424106)

March 2019

Figure S1. Phylogenetic relationship of AGO proteins in different organisms. Figure S2. Phylogenetic...

Table_7_Identification of Populus Small RNAs Responsive to Mutualistic Interactions With Mycorrhizal Fungi, Laccaria bicolor and Rhizophagus irregularis.XLSX

Ritesh Mewalal (2547931)
Hengfu Yin (5572028)
Rongbin Hu (583896)
Sara Jawdy (3533078)
Patrice Vion (6473750)
Gerald A. Tuskan (137746)
François Le Tacon (144820)
Jessy L. Labbé (137733)
Xiaohan Yang (430728)

March 2019

Ecto- and endo-mycorrhizal colonization of Populus roots have a positive impact on the overall tree ...

Table_6_Identification of Populus Small RNAs Responsive to Mutualistic Interactions With Mycorrhizal Fungi, Laccaria bicolor and Rhizophagus irregularis.DOCX

Ritesh Mewalal (2547931)
Hengfu Yin (5572028)
Rongbin Hu (583896)
Sara Jawdy (3533078)
Patrice Vion (6473750)
Gerald A. Tuskan (137746)
François Le Tacon (144820)
Jessy L. Labbé (137733)
Xiaohan Yang (430728)

March 2019

Ecto- and endo-mycorrhizal colonization of Populus roots have a positive impact on the overall tree ...

Table_3_Identification of Populus Small RNAs Responsive to Mutualistic Interactions With Mycorrhizal Fungi, Laccaria bicolor and Rhizophagus irregularis.DOCX

Ritesh Mewalal (2547931)
Hengfu Yin (5572028)
Rongbin Hu (583896)
Sara Jawdy (3533078)
Patrice Vion (6473750)
Gerald A. Tuskan (137746)
François Le Tacon (144820)
Jessy L. Labbé (137733)
Xiaohan Yang (430728)

March 2019

Ecto- and endo-mycorrhizal colonization of Populus roots have a positive impact on the overall tree ...

Table_2_Identification of Populus Small RNAs Responsive to Mutualistic Interactions With Mycorrhizal Fungi, Laccaria bicolor and Rhizophagus irregularis.DOCX

Ritesh Mewalal (2547931)
Hengfu Yin (5572028)
Rongbin Hu (583896)
Sara Jawdy (3533078)
Patrice Vion (6473750)
Gerald A. Tuskan (137746)
François Le Tacon (144820)
Jessy L. Labbé (137733)
Xiaohan Yang (430728)

March 2019

Ecto- and endo-mycorrhizal colonization of Populus roots have a positive impact on the overall tree ...

Table_4_Identification of Populus Small RNAs Responsive to Mutualistic Interactions With Mycorrhizal Fungi, Laccaria bicolor and Rhizophagus irregularis.DOCX

Ritesh Mewalal (2547931)
Hengfu Yin (5572028)
Rongbin Hu (583896)
Sara Jawdy (3533078)
Patrice Vion (6473750)
Gerald A. Tuskan (137746)
François Le Tacon (144820)
Jessy L. Labbé (137733)
Xiaohan Yang (430728)

March 2019

Ecto- and endo-mycorrhizal colonization of Populus roots have a positive impact on the overall tree ...

Table_5_Identification of Populus Small RNAs Responsive to Mutualistic Interactions With Mycorrhizal Fungi, Laccaria bicolor and Rhizophagus irregularis.DOCX

Ritesh Mewalal (2547931)
Hengfu Yin (5572028)
Rongbin Hu (583896)
Sara Jawdy (3533078)
Patrice Vion (6473750)
Gerald A. Tuskan (137746)
François Le Tacon (144820)
Jessy L. Labbé (137733)
Xiaohan Yang (430728)

March 2019

Ecto- and endo-mycorrhizal colonization of Populus roots have a positive impact on the overall tree ...

Table_1_Identification of Populus Small RNAs Responsive to Mutualistic Interactions With Mycorrhizal Fungi, Laccaria bicolor and Rhizophagus irregularis.DOCX

Ritesh Mewalal (2547931)
Hengfu Yin (5572028)
Rongbin Hu (583896)
Sara Jawdy (3533078)
Patrice Vion (6473750)
Gerald A. Tuskan (137746)
François Le Tacon (144820)
Jessy L. Labbé (137733)
Xiaohan Yang (430728)

March 2019

Ecto- and endo-mycorrhizal colonization of Populus roots have a positive impact on the overall tree ...

Additional file 6: of In silico analysis of fungal small RNA accumulation reveals putative plant mRNA targets in the symbiosis between an arbuscular mycorrhizal fungus and its host plant

Alessandro Silvestri (2864699)
Valentina Fiorilli (6424091)
Laura Miozzi (92798)
Gian Accotto (6424100)
Massimo Turina (3196788)
Luisa Lanfranco (6424106)

March 2019

Results of Mtr-miRNA – Mtr-mRNA target prediction performed with sPARTA. We added the description of...

Additional file 5: of In silico analysis of fungal small RNA accumulation reveals putative plant mRNA targets in the symbiosis between an arbuscular mycorrhizal fungus and its host plant

Alessandro Silvestri (2864699)
Valentina Fiorilli (6424091)
Laura Miozzi (92798)
Gian Accotto (6424100)
Massimo Turina (3196788)
Luisa Lanfranco (6424106)

March 2019

Results of Rir-sRNA – Mtr-mRNA target prediction performed with sPARTA. We added at the filtered sof...

Additional file 8: of In silico analysis of fungal small RNA accumulation reveals putative plant mRNA targets in the symbiosis between an arbuscular mycorrhizal fungus and its host plant

Alessandro Silvestri (2864699)
Valentina Fiorilli (6424091)
Laura Miozzi (92798)
Gian Accotto (6424100)
Massimo Turina (3196788)
Luisa Lanfranco (6424106)

March 2019

Results of DE analysis of sRNA reads originated from Mtr-mRNAs for identification of mycorrhizal ind...

Additional file 4: of In silico analysis of fungal small RNA accumulation reveals putative plant mRNA targets in the symbiosis between an arbuscular mycorrhizal fungus and its host plant

Alessandro Silvestri (2864699)
Valentina Fiorilli (6424091)
Laura Miozzi (92798)
Gian Accotto (6424100)
Massimo Turina (3196788)
Luisa Lanfranco (6424106)

March 2019

Characterization of sRNA-generating loci. For each of the predicted 2131 sRNA-generating loci we rep...

Additional file 3: of In silico analysis of fungal small RNA accumulation reveals putative plant mRNA targets in the symbiosis between an arbuscular mycorrhizal fungus and its host plant

Alessandro Silvestri (2864699)
Valentina Fiorilli (6424091)
Laura Miozzi (92798)
Gian Accotto (6424100)
Massimo Turina (3196788)
Luisa Lanfranco (6424106)

March 2019

Number of sRNA reads after each filtering step and RFAM families IDs (version 12.0) used for rRNA, t...

Additional file 2: of In silico analysis of fungal small RNA accumulation reveals putative plant mRNA targets in the symbiosis between an arbuscular mycorrhizal fungus and its host plant

Alessandro Silvestri (2864699)
Valentina Fiorilli (6424091)
Laura Miozzi (92798)
Gian Accotto (6424100)
Massimo Turina (3196788)
Luisa Lanfranco (6424106)

March 2019

In silico expression analysis of AGO-like, RdRp and DCL identified in R. irregularis. For each seque...

In silico analysis of fungal small RNA accumulation reveals putative plant mRNA targets in the symbiosis between an arbuscular mycorrhizal fungus and its host plant

Alessandro Silvestri
Valentina Fiorilli
Laura Miozzi
Gian Paolo Accotto
Massimo Turina
Luisa Lanfranco

March 2019

Abstract Background Small RNAs (sRNAs) are short non-coding RNA molecules (20–30 nt) that regulate g...

Additional file 1: of In silico analysis of fungal small RNA accumulation reveals putative plant mRNA targets in the symbiosis between an arbuscular mycorrhizal fungus and its host plant

Alessandro Silvestri (2864699)
Valentina Fiorilli (6424091)
Laura Miozzi (92798)
Gian Accotto (6424100)
Massimo Turina (3196788)
Luisa Lanfranco (6424106)

March 2019

Figure S1. Phylogenetic relationship of AGO proteins in different organisms. Figure S2. Phylogenetic...

Table_7_Identification of Populus Small RNAs Responsive to Mutualistic Interactions With Mycorrhizal Fungi, Laccaria bicolor and Rhizophagus irregularis.XLSX

Ritesh Mewalal (2547931)
Hengfu Yin (5572028)
Rongbin Hu (583896)
Sara Jawdy (3533078)
Patrice Vion (6473750)
Gerald A. Tuskan (137746)
François Le Tacon (144820)
Jessy L. Labbé (137733)
Xiaohan Yang (430728)

March 2019

Ecto- and endo-mycorrhizal colonization of Populus roots have a positive impact on the overall tree ...

Table_6_Identification of Populus Small RNAs Responsive to Mutualistic Interactions With Mycorrhizal Fungi, Laccaria bicolor and Rhizophagus irregularis.DOCX

Ritesh Mewalal (2547931)
Hengfu Yin (5572028)
Rongbin Hu (583896)
Sara Jawdy (3533078)
Patrice Vion (6473750)
Gerald A. Tuskan (137746)
François Le Tacon (144820)
Jessy L. Labbé (137733)
Xiaohan Yang (430728)

March 2019

Ecto- and endo-mycorrhizal colonization of Populus roots have a positive impact on the overall tree ...

Table_3_Identification of Populus Small RNAs Responsive to Mutualistic Interactions With Mycorrhizal Fungi, Laccaria bicolor and Rhizophagus irregularis.DOCX

Ritesh Mewalal (2547931)
Hengfu Yin (5572028)
Rongbin Hu (583896)
Sara Jawdy (3533078)
Patrice Vion (6473750)
Gerald A. Tuskan (137746)
François Le Tacon (144820)
Jessy L. Labbé (137733)
Xiaohan Yang (430728)

March 2019

Ecto- and endo-mycorrhizal colonization of Populus roots have a positive impact on the overall tree ...

Table_2_Identification of Populus Small RNAs Responsive to Mutualistic Interactions With Mycorrhizal Fungi, Laccaria bicolor and Rhizophagus irregularis.DOCX

Ritesh Mewalal (2547931)
Hengfu Yin (5572028)
Rongbin Hu (583896)
Sara Jawdy (3533078)
Patrice Vion (6473750)
Gerald A. Tuskan (137746)
François Le Tacon (144820)
Jessy L. Labbé (137733)
Xiaohan Yang (430728)

March 2019

Ecto- and endo-mycorrhizal colonization of Populus roots have a positive impact on the overall tree ...

Table_4_Identification of Populus Small RNAs Responsive to Mutualistic Interactions With Mycorrhizal Fungi, Laccaria bicolor and Rhizophagus irregularis.DOCX

Ritesh Mewalal (2547931)
Hengfu Yin (5572028)
Rongbin Hu (583896)
Sara Jawdy (3533078)
Patrice Vion (6473750)
Gerald A. Tuskan (137746)
François Le Tacon (144820)
Jessy L. Labbé (137733)
Xiaohan Yang (430728)

March 2019

Ecto- and endo-mycorrhizal colonization of Populus roots have a positive impact on the overall tree ...

Table_5_Identification of Populus Small RNAs Responsive to Mutualistic Interactions With Mycorrhizal Fungi, Laccaria bicolor and Rhizophagus irregularis.DOCX

Ritesh Mewalal (2547931)
Hengfu Yin (5572028)
Rongbin Hu (583896)
Sara Jawdy (3533078)
Patrice Vion (6473750)
Gerald A. Tuskan (137746)
François Le Tacon (144820)
Jessy L. Labbé (137733)
Xiaohan Yang (430728)

March 2019

Ecto- and endo-mycorrhizal colonization of Populus roots have a positive impact on the overall tree ...

Table_1_Identification of Populus Small RNAs Responsive to Mutualistic Interactions With Mycorrhizal Fungi, Laccaria bicolor and Rhizophagus irregularis.DOCX

Ritesh Mewalal (2547931)
Hengfu Yin (5572028)
Rongbin Hu (583896)
Sara Jawdy (3533078)
Patrice Vion (6473750)
Gerald A. Tuskan (137746)
François Le Tacon (144820)
Jessy L. Labbé (137733)
Xiaohan Yang (430728)

March 2019

Ecto- and endo-mycorrhizal colonization of Populus roots have a positive impact on the overall tree ...

Additional file 7: of In silico analysis of fungal small RNA accumulation reveals putative plant mRNA targets in the symbiosis between an arbuscular mycorrhizal fungus and its host plant

Abstract

Extracted data

Additional file 7: of In silico analysis of fungal small RNA accumulation reveals putative plant mRNA targets in the symbiosis between an arbuscular mycorrhizal fungus and its host plant

Abstract

Extracted data

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