In silico expression analysis of AGO-like, RdRp and DCL identified in R. irregularis. For each sequence we reported: the protein and transcript IDs (JGI), the number of paired mapped reads and FPKM from RNA-seq data-sets (SRR3285893–SRR3285895: 2 day germinating spores; SRR3285917–SRR3285919: symbiotic tissues; Chen et al. 2018) taking into account, the nucleotide length of transcript and the amino-acid length of protein. (XLSX 9 kb
ITS/SRP RNA multiple sequence alignment : Explanation note: Multiple sequence alignment compri...
Abstract Background Small RNAs (sRNAs) are short non-coding RNA molecules (20–30 nt) that regulate g...
The genic distribution of two sets of transcriptome sequencing reads from the two V. dahliae strains...
Figure S1. Phylogenetic relationship of AGO proteins in different organisms. Figure S2. Phylogenetic...
Characterization of sRNA-generating loci. For each of the predicted 2131 sRNA-generating loci we rep...
Results of DE analysis of sRNA reads originated from Mtr-mRNAs for identification of mycorrhizal ind...
Number of sRNA reads after each filtering step and RFAM families IDs (version 12.0) used for rRNA, t...
Prediction results for Mtr-mRNAs that are targeted by both Rir-sRNAs and Mtr-miRNAs according to sPA...
Results of Rir-sRNA – Mtr-mRNA target prediction performed with sPARTA. We added at the filtered sof...
Results of Mtr-miRNA – Mtr-mRNA target prediction performed with sPARTA. We added the description of...
ITS multiple sequence alignment : Explanation note: A multiple sequence alignment in the NEXUS...
Functional classification of the Cronartium ribicola reference transcriptome assembled de novo from ...
Output from cmsearch and primers used : Explanation note: A) The output from cmsearch showing ...
Output from cmsearch and primers used : Explanation note: A) The output from cmsearch showing ...
SRP RNA multiple sequence alignment : Explanation note: Multiple sequence alignment with the S...
ITS/SRP RNA multiple sequence alignment : Explanation note: Multiple sequence alignment compri...
Abstract Background Small RNAs (sRNAs) are short non-coding RNA molecules (20–30 nt) that regulate g...
The genic distribution of two sets of transcriptome sequencing reads from the two V. dahliae strains...
Figure S1. Phylogenetic relationship of AGO proteins in different organisms. Figure S2. Phylogenetic...
Characterization of sRNA-generating loci. For each of the predicted 2131 sRNA-generating loci we rep...
Results of DE analysis of sRNA reads originated from Mtr-mRNAs for identification of mycorrhizal ind...
Number of sRNA reads after each filtering step and RFAM families IDs (version 12.0) used for rRNA, t...
Prediction results for Mtr-mRNAs that are targeted by both Rir-sRNAs and Mtr-miRNAs according to sPA...
Results of Rir-sRNA – Mtr-mRNA target prediction performed with sPARTA. We added at the filtered sof...
Results of Mtr-miRNA – Mtr-mRNA target prediction performed with sPARTA. We added the description of...
ITS multiple sequence alignment : Explanation note: A multiple sequence alignment in the NEXUS...
Functional classification of the Cronartium ribicola reference transcriptome assembled de novo from ...
Output from cmsearch and primers used : Explanation note: A) The output from cmsearch showing ...
Output from cmsearch and primers used : Explanation note: A) The output from cmsearch showing ...
SRP RNA multiple sequence alignment : Explanation note: Multiple sequence alignment with the S...
ITS/SRP RNA multiple sequence alignment : Explanation note: Multiple sequence alignment compri...
Abstract Background Small RNAs (sRNAs) are short non-coding RNA molecules (20–30 nt) that regulate g...
The genic distribution of two sets of transcriptome sequencing reads from the two V. dahliae strains...