Additional file 4: of De novo transcriptome assembly of the cubomedusa Tripedalia cystophora, including the analysis of a set of genes involved in peptidergic neurotransmission

Additional file 2: of Transcriptome profiling of Diachasmimorpha longicaudata towards useful molecular tools for population management

M. Mannino (3500150)
Máximo Rivarola (3500165)
Alejandra Scannapieco (3500153)
Sergio González (3500162)
Marisa Farber (3500147)
Jorge Cladera (706116)
Silvia Lanzavecchia (706110)

October 2016

RNA-Seq differentially expressed sequences between sexes. Dataset normalized according to sequence l...

Additional file 4: of Transcriptomes of post-mitotic neurons identify the usage of alternative pathways during adult and embryonic neuronal differentiation

Alexandra Tallafuss (3542138)
Meghan Kelly (155816)
Leslie Gay (3542147)
Dan Gibson (699105)
Peter Batzel (152942)
Kate Karfilis (3542141)
Judith Eisen (3542144)
Kryn Stankunas (538980)
John Postlethwait (841459)
Philip Washbourne (2922252)

December 2015

List of genes expressed in the nervous system obtained from ZebrafishMine (http://www.zebrafishmine....

Additional file 6: Table S5. of Comparative transcriptome analysis of second- and third-generation merozoites of Eimeria necatrix

Shijie Su (4371757)
Zhaofeng Hou (4371754)
Dandan Liu (303719)
Chuanli Jia (4371751)
Lele Wang (542468)
Jinjun Xu (777049)
Jianping Tao (124288)

August 2017

Information on differentially expressed mRNA transcripts coding for SAG proteins, CMGC, ApiAP2 and D...

Additional file 1: of De novo transcriptome assembly of the cubomedusa Tripedalia cystophora, including the analysis of a set of genes involved in peptidergic neurotransmission

Sofie Nielsen (6427991)
Thomas Koch (784237)
Frank Hauser (465752)
Anders Garm (420517)
Cornelis Grimmelikhuijzen (6427994)

March 2019

A: Quality assessment of PacBio data. B: Read length distribution of ROIs from the first PacBio sequ...

Additional file 2: of De novo transcriptome assembly of the cubomedusa Tripedalia cystophora, including the analysis of a set of genes involved in peptidergic neurotransmission

Sofie Nielsen (6427991)
Thomas Koch (784237)
Frank Hauser (465752)
Anders Garm (420517)
Cornelis Grimmelikhuijzen (6427994)

March 2019

A: Read length distribution of all ROIs from combined data from the first and second PacBio sequenci...

Additional file 6: of De novo transcriptome assembly of the cubomedusa Tripedalia cystophora, including the analysis of a set of genes involved in peptidergic neurotransmission

Sofie Nielsen (6427991)
Thomas Koch (784237)
Frank Hauser (465752)
Anders Garm (420517)
Cornelis Grimmelikhuijzen (6427994)

March 2019

A flow diagram of our software used to predict neuropeptide preprohormones in a transcriptome. (DOCX...

Additional file 5: of De novo transcriptome assembly of the cubomedusa Tripedalia cystophora, including the analysis of a set of genes involved in peptidergic neurotransmission

Sofie Nielsen (6427991)
Thomas Koch (784237)
Frank Hauser (465752)
Anders Garm (420517)
Cornelis Grimmelikhuijzen (6427994)

March 2019

Comparison of the transcripts from the T. cystophora transcriptome with those from selected other eu...

Additional file 7: of De novo transcriptome assembly of the cubomedusa Tripedalia cystophora, including the analysis of a set of genes involved in peptidergic neurotransmission

Sofie Nielsen (6427991)
Thomas Koch (784237)
Frank Hauser (465752)
Anders Garm (420517)
Cornelis Grimmelikhuijzen (6427994)

March 2019

Our script written in Python3 used to predict neuropeptide preprohormones in a transcriptome. (PY 3 ...

Additional file 9: of De novo transcriptome assembly of the cubomedusa Tripedalia cystophora, including the analysis of a set of genes involved in peptidergic neurotransmission

Sofie Nielsen (6427991)
Thomas Koch (784237)
Frank Hauser (465752)
Anders Garm (420517)
Cornelis Grimmelikhuijzen (6427994)

March 2019

A table, including accession numbers of biogenic amine GPCRs, neuropeptide GPCRs, LGRs, and opsins p...

Additional file 8: of De novo transcriptome assembly of the cubomedusa Tripedalia cystophora, including the analysis of a set of genes involved in peptidergic neurotransmission

Sofie Nielsen (6427991)
Thomas Koch (784237)
Frank Hauser (465752)
Anders Garm (420517)
Cornelis Grimmelikhuijzen (6427994)

March 2019

The amino acid sequences of the predicted RFamideII preprohormones from T. cystophora and A. alata. ...

Additional file 4: of Comparative transcriptome analysis of Eimeria maxima (Apicomplexa: Eimeriidae) suggests DNA replication activities correlating with its fecundity

Dandan Hu (2823056)
Chaoyue Wang (4954060)
Si Wang (519067)
Xinming Tang (3566492)
Chunhui Duan (1954435)
Sixin Zhang (5784320)
Jinxia Suo (5784323)
Miner Deng (5784326)
Yanli Lv (5784329)
Xun Suo (317782)
Xianyong Liu (317774)

September 2018

Statistics of RNA-seq data mapped to E.maxima genome. Genome and gene models of E. maxima in ToxoDB ...

Transcriptome of Pseudaphanostoma variabilis

Albert Poustka (6268718)

February 2019

A denovo assembly of the transcriptome of whole animals of of Pseudaphanostoma variabilis. Assembled...

Additional file 1: of Adaptations in energy metabolism and gene family expansions revealed by comparative transcriptomics of three Chagas disease triatomine vectors

Jesús Martínez-Barnetche (429756)
Andrés Lavore (3749215)
Melina Beliera (5148293)
Juan Téllez-Sosa (429748)
Federico Zumaya-Estrada (4787466)
Victorio Palacio (3749206)
Ernestina Godoy-Lozano (5148290)
Rolando Rivera-Pomar (507671)
Mario Rodríguez (406354)

April 2018

InterProScan analysis of Pacifastin domain containing proteins in Reduviids (IPR008037). Data for Fi...

Additional file 4: of Tissue-specific transcriptomics and proteomics of a filarial nematode and its Wolbachia endosymbiont

Ashley Luck (3402746)
Kathryn Anderson (3402755)
Colleen McClung (3402752)
Nathan VerBerkmoes (2247118)
Jeremy Foster (8845)
Michelle Michalski (3402749)
Barton Slatko (8869)

November 2015

Table S2. List of over-represented GO terms and their associated p-values for tissue-associated D. i...

Additional file 1: of De novo transcriptome assembly of brackish water flea Diaphanosoma celebensis based on short-term cadmium and benzo[a]pyrene exposure experiments

Bo-Mi Kim (314453)
Seunghyun Kang (3686752)
Ryeo-Ok Kim (1876699)
Jee-Hyun Jung (1482727)
Kyun-Woo Lee (1905694)
Jae-Sung Rhee (1876702)
Young-Mi Lee (3547847)

November 2018

Table S1. Summary of the library construction. Table S2. Summary of the de novo transcriptome assemb...

Additional file 2: of Transcriptome profiling of Diachasmimorpha longicaudata towards useful molecular tools for population management

M. Mannino (3500150)
Máximo Rivarola (3500165)
Alejandra Scannapieco (3500153)
Sergio González (3500162)
Marisa Farber (3500147)
Jorge Cladera (706116)
Silvia Lanzavecchia (706110)

October 2016

RNA-Seq differentially expressed sequences between sexes. Dataset normalized according to sequence l...

Additional file 4: of Transcriptomes of post-mitotic neurons identify the usage of alternative pathways during adult and embryonic neuronal differentiation

Alexandra Tallafuss (3542138)
Meghan Kelly (155816)
Leslie Gay (3542147)
Dan Gibson (699105)
Peter Batzel (152942)
Kate Karfilis (3542141)
Judith Eisen (3542144)
Kryn Stankunas (538980)
John Postlethwait (841459)
Philip Washbourne (2922252)

December 2015

List of genes expressed in the nervous system obtained from ZebrafishMine (http://www.zebrafishmine....

Additional file 6: Table S5. of Comparative transcriptome analysis of second- and third-generation merozoites of Eimeria necatrix

Shijie Su (4371757)
Zhaofeng Hou (4371754)
Dandan Liu (303719)
Chuanli Jia (4371751)
Lele Wang (542468)
Jinjun Xu (777049)
Jianping Tao (124288)

August 2017

Information on differentially expressed mRNA transcripts coding for SAG proteins, CMGC, ApiAP2 and D...

Additional file 1: of De novo transcriptome assembly of the cubomedusa Tripedalia cystophora, including the analysis of a set of genes involved in peptidergic neurotransmission

Sofie Nielsen (6427991)
Thomas Koch (784237)
Frank Hauser (465752)
Anders Garm (420517)
Cornelis Grimmelikhuijzen (6427994)

March 2019

A: Quality assessment of PacBio data. B: Read length distribution of ROIs from the first PacBio sequ...

Additional file 2: of De novo transcriptome assembly of the cubomedusa Tripedalia cystophora, including the analysis of a set of genes involved in peptidergic neurotransmission

Sofie Nielsen (6427991)
Thomas Koch (784237)
Frank Hauser (465752)
Anders Garm (420517)
Cornelis Grimmelikhuijzen (6427994)

March 2019

A: Read length distribution of all ROIs from combined data from the first and second PacBio sequenci...

Additional file 6: of De novo transcriptome assembly of the cubomedusa Tripedalia cystophora, including the analysis of a set of genes involved in peptidergic neurotransmission

Sofie Nielsen (6427991)
Thomas Koch (784237)
Frank Hauser (465752)
Anders Garm (420517)
Cornelis Grimmelikhuijzen (6427994)

March 2019

A flow diagram of our software used to predict neuropeptide preprohormones in a transcriptome. (DOCX...

Additional file 5: of De novo transcriptome assembly of the cubomedusa Tripedalia cystophora, including the analysis of a set of genes involved in peptidergic neurotransmission

Sofie Nielsen (6427991)
Thomas Koch (784237)
Frank Hauser (465752)
Anders Garm (420517)
Cornelis Grimmelikhuijzen (6427994)

March 2019

Comparison of the transcripts from the T. cystophora transcriptome with those from selected other eu...

Additional file 7: of De novo transcriptome assembly of the cubomedusa Tripedalia cystophora, including the analysis of a set of genes involved in peptidergic neurotransmission

Sofie Nielsen (6427991)
Thomas Koch (784237)
Frank Hauser (465752)
Anders Garm (420517)
Cornelis Grimmelikhuijzen (6427994)

March 2019

Our script written in Python3 used to predict neuropeptide preprohormones in a transcriptome. (PY 3 ...

Additional file 9: of De novo transcriptome assembly of the cubomedusa Tripedalia cystophora, including the analysis of a set of genes involved in peptidergic neurotransmission

Sofie Nielsen (6427991)
Thomas Koch (784237)
Frank Hauser (465752)
Anders Garm (420517)
Cornelis Grimmelikhuijzen (6427994)

March 2019

A table, including accession numbers of biogenic amine GPCRs, neuropeptide GPCRs, LGRs, and opsins p...

Additional file 8: of De novo transcriptome assembly of the cubomedusa Tripedalia cystophora, including the analysis of a set of genes involved in peptidergic neurotransmission

Sofie Nielsen (6427991)
Thomas Koch (784237)
Frank Hauser (465752)
Anders Garm (420517)
Cornelis Grimmelikhuijzen (6427994)

March 2019

The amino acid sequences of the predicted RFamideII preprohormones from T. cystophora and A. alata. ...

Additional file 4: of Comparative transcriptome analysis of Eimeria maxima (Apicomplexa: Eimeriidae) suggests DNA replication activities correlating with its fecundity

Dandan Hu (2823056)
Chaoyue Wang (4954060)
Si Wang (519067)
Xinming Tang (3566492)
Chunhui Duan (1954435)
Sixin Zhang (5784320)
Jinxia Suo (5784323)
Miner Deng (5784326)
Yanli Lv (5784329)
Xun Suo (317782)
Xianyong Liu (317774)

September 2018

Statistics of RNA-seq data mapped to E.maxima genome. Genome and gene models of E. maxima in ToxoDB ...

Transcriptome of Pseudaphanostoma variabilis

Albert Poustka (6268718)

February 2019

A denovo assembly of the transcriptome of whole animals of of Pseudaphanostoma variabilis. Assembled...

Additional file 1: of Adaptations in energy metabolism and gene family expansions revealed by comparative transcriptomics of three Chagas disease triatomine vectors

Jesús Martínez-Barnetche (429756)
Andrés Lavore (3749215)
Melina Beliera (5148293)
Juan Téllez-Sosa (429748)
Federico Zumaya-Estrada (4787466)
Victorio Palacio (3749206)
Ernestina Godoy-Lozano (5148290)
Rolando Rivera-Pomar (507671)
Mario Rodríguez (406354)

April 2018

InterProScan analysis of Pacifastin domain containing proteins in Reduviids (IPR008037). Data for Fi...

Additional file 4: of Tissue-specific transcriptomics and proteomics of a filarial nematode and its Wolbachia endosymbiont

Ashley Luck (3402746)
Kathryn Anderson (3402755)
Colleen McClung (3402752)
Nathan VerBerkmoes (2247118)
Jeremy Foster (8845)
Michelle Michalski (3402749)
Barton Slatko (8869)

November 2015

Table S2. List of over-represented GO terms and their associated p-values for tissue-associated D. i...

Additional file 1: of De novo transcriptome assembly of brackish water flea Diaphanosoma celebensis based on short-term cadmium and benzo[a]pyrene exposure experiments

Bo-Mi Kim (314453)
Seunghyun Kang (3686752)
Ryeo-Ok Kim (1876699)
Jee-Hyun Jung (1482727)
Kyun-Woo Lee (1905694)
Jae-Sung Rhee (1876702)
Young-Mi Lee (3547847)

November 2018

Table S1. Summary of the library construction. Table S2. Summary of the de novo transcriptome assemb...

Additional file 2: of Transcriptome profiling of Diachasmimorpha longicaudata towards useful molecular tools for population management

M. Mannino (3500150)
Máximo Rivarola (3500165)
Alejandra Scannapieco (3500153)
Sergio González (3500162)
Marisa Farber (3500147)
Jorge Cladera (706116)
Silvia Lanzavecchia (706110)

October 2016

RNA-Seq differentially expressed sequences between sexes. Dataset normalized according to sequence l...

Additional file 4: of Transcriptomes of post-mitotic neurons identify the usage of alternative pathways during adult and embryonic neuronal differentiation

Alexandra Tallafuss (3542138)
Meghan Kelly (155816)
Leslie Gay (3542147)
Dan Gibson (699105)
Peter Batzel (152942)
Kate Karfilis (3542141)
Judith Eisen (3542144)
Kryn Stankunas (538980)
John Postlethwait (841459)
Philip Washbourne (2922252)

December 2015

List of genes expressed in the nervous system obtained from ZebrafishMine (http://www.zebrafishmine....

Additional file 6: Table S5. of Comparative transcriptome analysis of second- and third-generation merozoites of Eimeria necatrix

Shijie Su (4371757)
Zhaofeng Hou (4371754)
Dandan Liu (303719)
Chuanli Jia (4371751)
Lele Wang (542468)
Jinjun Xu (777049)
Jianping Tao (124288)

August 2017

Information on differentially expressed mRNA transcripts coding for SAG proteins, CMGC, ApiAP2 and D...

Additional file 4: of De novo transcriptome assembly of the cubomedusa Tripedalia cystophora, including the analysis of a set of genes involved in peptidergic neurotransmission

Abstract

Extracted data

Additional file 4: of De novo transcriptome assembly of the cubomedusa Tripedalia cystophora, including the analysis of a set of genes involved in peptidergic neurotransmission

Abstract

Extracted data

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