Additional file 2: of Clinical impact of the type VI secretion system on virulence of Campylobacter species during infection

Jessica Agnetti (6438311)
Helena Seth-Smith (209053)
Sebastian Ursich (6438314)
Josiane Reist (6438317)
Marek Basler (173162)
Christian Nickel (6438323)
Stefano Bassetti (3371039)
Nicole Ritz (150015)
Sarah Tschudin-Sutter (720526)
Adrian Egli (93521)

Publication date

March 2019

DOI

10.6084/m9.figshare.7819163.v1

Abstract

Table S2. Paediatric patient characteristics. Description of data: Table with descriptive statistics on a paediatric cohort of 22 patients. (DOCX 13 kb

Extracted data

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Data Protection

Additional file 2: of Clinical impact of the type VI secretion system on virulence of Campylobacter species during infection

Jessica Agnetti (6438311)
Helena Seth-Smith (209053)
Sebastian Ursich (6438314)
Josiane Reist (6438317)
Marek Basler (173162)
Christian Nickel (6438323)
Stefano Bassetti (3371039)
Nicole Ritz (150015)
Sarah Tschudin-Sutter (720526)
Adrian Egli (93521)

Open link

Publication date

March 2019

DOI

10.6084/m9.figshare.7819163.v1

Abstract

Table S2. Paediatric patient characteristics. Description of data: Table with descriptive statistics on a paediatric cohort of 22 patients. (DOCX 13 kb

Extracted data

Huanzi Zhong (435045)
John Penders (396322)
Zhun Shi (1788565)
Huahui Ren (6175241)
Kaiye Cai (466845)
Chao Fang (456315)
Qiuxia Ding (5729522)
Carel Thijs (112720)
Ellen Blaak (382092)
Coen Stehouwer (3404234)
Xun Xu (276108)
Huanming Yang (5905)
Jian Wang (5901)
Jun Wang (5906)
Daisy Jonkers (325717)
Ad Masclee (325723)
Susanne Brix (331912)
Junhua Li (125998)
Ilja Arts (5486738)
Karsten Kristiansen (175581)

January 2019

Table S1. Summary of phenotypic information of Dutch children at 6â9âyears of age. Table S2. Seq...

Additional file 6: of Î˛2-Adrenergic receptor promoter haplotype influences the severity of acute viral respiratory tract infection during infancy: a prospective cohort study

Pingsheng Wu (165445)
Emma Larkin (223802)
Sara Reiss (3548174)
Kecia Carroll (3548177)
Marshall Summar (509428)
Patricia Minton (356855)
Kimberly Woodward (3548168)
Zhouwen Liu (356853)
Jessica Islam (3548180)
Tina Hartert (3548171)
Paul Moore (469661)

September 2015

BSS distribution stratified by copy number of combined haplotype TTGGC and separated by race. The sc...

Additional file 1: of Clinical impact of the type VI secretion system on virulence of Campylobacter species during infection

Jessica Agnetti (6438311)
Helena Seth-Smith (209053)
Sebastian Ursich (6438314)
Josiane Reist (6438317)
Marek Basler (173162)
Christian Nickel (6438323)
Stefano Bassetti (3371039)
Nicole Ritz (150015)
Sarah Tschudin-Sutter (720526)
Adrian Egli (93521)

March 2019

Table S1. Isolates and genome data. Description of data: List of analysed Campylobacter isolates wit...

Additional file 1: of Identfication of viral and bacterial etiologic agents of the pertussis-like syndrome in children under 5âyears old hospitalized

Stephanie Saiki-Macedo (5938649)
Jorge Valverde-Ezeta (5938647)
Angela Cornejo-Tapia (3950183)
Maria Castillo (5718830)
VerĂłnica Petrozzi-Helasvuo (6249095)
Miguel Aguilar-Luis (3949547)
Luis del Valle (4664446)
Erico Cieza-Mora (3950186)
Carlos Bada (3950189)
Olguita del Aguila (5180339)
Wilmer Silva-Caso (195994)
Johanna Martins-Luna (5237642)
Fernando Vasquez-Achaya (4592056)
Juana del Valle-Mendoza (2172505)

January 2019

Table S1. Demographics in children with a probable diagnosis of Pertussis, positives for respiratory...

Additional file 2: of Identfication of viral and bacterial etiologic agents of the pertussis-like syndrome in children under 5âyears old hospitalized

Stephanie Saiki-Macedo (5938649)
Jorge Valverde-Ezeta (5938647)
Angela Cornejo-Tapia (3950183)
Maria Castillo (5718830)
VerĂłnica Petrozzi-Helasvuo (6249095)
Miguel Aguilar-Luis (3949547)
Luis del Valle (4664446)
Erico Cieza-Mora (3950186)
Carlos Bada (3950189)
Olguita del Aguila (5180339)
Wilmer Silva-Caso (195994)
Johanna Martins-Luna (5237642)
Fernando Vasquez-Achaya (4592056)
Juana del Valle-Mendoza (2172505)

January 2019

Table S2. Clinical symptoms in hospitalized children with a probable diagnosis of Pertussis, positiv...

Additional file 2: Table S1. of Genomic insights from whole genome sequencing of four clonal outbreak Campylobacter jejuni assessed within the global C. jejuni population

Clifford Clark (3514856)
Chrystal Berry (3514853)
Matthew Walker (343875)
Aaron Petkau (3514859)
Dillon Barker (3514850)
Cai Guan (3514847)
Aleisha Reimer (3370232)
Eduardo Taboada (31427)

December 2016

Selected SNVs detected using NUCmer for comparing all outbreak isolates using 00â2425 as reference...

Additional file 1: of Insights into the impact of flhF inactivation on Campylobacter jejuni colonization of chick and mice gut

Fangzhe Ren (5881118)
Xiaofei Li (334285)
Haiyan Tang (3808186)
Qidong Jiang (5881124)
Xi Yun (5881127)
Lin Fang (5898)
Pingyu Huang (5881136)
Yuanyue Tang (5881139)
Qiuchun Li (4864117)
Jinlin Huang (1511983)
Xin-an Jiao (5881142)

October 2018

Figure S1. Identification of the C. jejuni isolate. Table S1. Primers used in this study. Table S2. ...

Additional file 4: of Identfication of viral and bacterial etiologic agents of the pertussis-like syndrome in children under 5âyears old hospitalized

Stephanie Saiki-Macedo (5938649)
Jorge Valverde-Ezeta (5938647)
Angela Cornejo-Tapia (3950183)
Maria Castillo (5718830)
VerĂłnica Petrozzi-Helasvuo (6249095)
Miguel Aguilar-Luis (3949547)
Luis del Valle (4664446)
Erico Cieza-Mora (3950186)
Carlos Bada (3950189)
Olguita del Aguila (5180339)
Wilmer Silva-Caso (195994)
Johanna Martins-Luna (5237642)
Fernando Vasquez-Achaya (4592056)
Juana del Valle-Mendoza (2172505)

January 2019

Table S4. Coinfections in hospitalized children with a probable diagnosis of Pertussis, positives fo...

Additional file 5: of Identfication of viral and bacterial etiologic agents of the pertussis-like syndrome in children under 5âyears old hospitalized

Stephanie Saiki-Macedo (5938649)
Jorge Valverde-Ezeta (5938647)
Angela Cornejo-Tapia (3950183)
Maria Castillo (5718830)
VerĂłnica Petrozzi-Helasvuo (6249095)
Miguel Aguilar-Luis (3949547)
Luis del Valle (4664446)
Erico Cieza-Mora (3950186)
Carlos Bada (3950189)
Olguita del Aguila (5180339)
Wilmer Silva-Caso (195994)
Johanna Martins-Luna (5237642)
Fernando Vasquez-Achaya (4592056)
Juana del Valle-Mendoza (2172505)

January 2019

Table S5. Complications among hospitalized children with a probable diagnosis of Pertussis, positive...

Additional file 2: of Diversity of virulence level phenotype of hypervirulent Klebsiella pneumoniae from different sequence type lineage

Qiucheng Shi (3233457)
Peng Lan (5699819)
Danyan Huang (5148011)
Xiaoting Hua (435699)
Yan Jiang (12139)
Jiancang Zhou (3233460)
Yunsong Yu (496103)

August 2018

Table S1. PCR primers used for studying Serotype and Virulence-Associated Genes of Klebsiella pneumo...

Additional file 2: of Prevalence, risk factors for infection and subtype distribution of the intestinal parasite Blastocystis sp. from a large-scale multi-center study in France

Dima El Safadi (736233)
Amandine Cian (653810)
Céline Nourrisson (653807)
Bruno Pereira (415597)
Christelle Morelle (3446330)
Patrick Bastien (68928)
Anne-Pauline Bellanger (3446333)
Françoise Botterel (43200)
Ermanno Candolfi (179298)
Guillaume Desoubeaux (3446336)
Laurence Lachaud (2636371)
Florent Morio (217685)
Christelle Pomares (312204)
Meja Rabodonirina (542035)
Ivan Wawrzyniak (329392)
Frédéric Delbac (329394)
Nausicaa Gantois (480716)
Gabriela Certad (111449)
Laurence Delhaes (153955)
Philippe Poirier (329391)
Eric Viscogliosi (111438)

August 2016

Post hoc comparison of the prevalence of Blastocystis sp. between age groups. (DOCX 14 kb

Additional file 2: of Rotavirus gastroenteritis in Indian children < 5 years hospitalized for diarrhoea, 2012 to 2016

Sidhartha Giri (2827025)
Nayana Nair (5541719)
Ann Mathew (6211175)
B. Manohar (6211178)
Anna Simon (302405)
Tejinder Singh (4747464)
S. Suresh Kumar (5920094)
M. Mathew (6211181)
Sudhir Babji (4268851)
Rashmi Arora (5541707)
C. Girish Kumar (6211184)
S. Venkatasubramanian (6211187)
Sanjay Mehendale (281610)
Mohan Gupte (5541713)
Gagandeep Kang (144643)

January 2019

Table S2. Association between rotavirus genotype and severity of diarrhoea. The file contains detail...

Additional file 5: Table S2. of Changing distribution of age, clinical severity, and genotypes of rotavirus gastroenteritis in hospitalized children after the introduction of vaccination: a single center study in Seoul between 2011 and 2014

Jung Shim (3418757)
Ju Chang (3418751)
Sue Shin (652479)
Jin Moon (3418760)
Jae Ko (3418754)

June 2016

Distribution of group A rotavirus G and P genotypes according to the vaccination status (exclude inc...

Additional file 2: of Impact of the 10-valent pneumococcal conjugate vaccine on antimicrobial prescriptions in young children: a whole population study

Elias Eythorsson (5820515)
Samuel Sigurdsson (5820518)
Birgir Hrafnkelsson (5820521)
Helga ErlendsdĂłttir (5820527)
Ăsgeir Haraldsson (5820530)
Karl Kristinsson (5820524)

October 2018

Table S1. The proportion of linked antimicrobials associated with each diagnostic group by calendar ...

Additional file 1: of Impact of early events and lifestyle on the gut microbiota and metabolic phenotypes in young school-age children

Huanzi Zhong (435045)
John Penders (396322)
Zhun Shi (1788565)
Huahui Ren (6175241)
Kaiye Cai (466845)
Chao Fang (456315)
Qiuxia Ding (5729522)
Carel Thijs (112720)
Ellen Blaak (382092)
Coen Stehouwer (3404234)
Xun Xu (276108)
Huanming Yang (5905)
Jian Wang (5901)
Jun Wang (5906)
Daisy Jonkers (325717)
Ad Masclee (325723)
Susanne Brix (331912)
Junhua Li (125998)
Ilja Arts (5486738)
Karsten Kristiansen (175581)

January 2019

Table S1. Summary of phenotypic information of Dutch children at 6â9âyears of age. Table S2. Seq...

Additional file 6: of Î˛2-Adrenergic receptor promoter haplotype influences the severity of acute viral respiratory tract infection during infancy: a prospective cohort study

Pingsheng Wu (165445)
Emma Larkin (223802)
Sara Reiss (3548174)
Kecia Carroll (3548177)
Marshall Summar (509428)
Patricia Minton (356855)
Kimberly Woodward (3548168)
Zhouwen Liu (356853)
Jessica Islam (3548180)
Tina Hartert (3548171)
Paul Moore (469661)

September 2015

BSS distribution stratified by copy number of combined haplotype TTGGC and separated by race. The sc...

Additional file 1: of Clinical impact of the type VI secretion system on virulence of Campylobacter species during infection

Jessica Agnetti (6438311)
Helena Seth-Smith (209053)
Sebastian Ursich (6438314)
Josiane Reist (6438317)
Marek Basler (173162)
Christian Nickel (6438323)
Stefano Bassetti (3371039)
Nicole Ritz (150015)
Sarah Tschudin-Sutter (720526)
Adrian Egli (93521)

March 2019

Table S1. Isolates and genome data. Description of data: List of analysed Campylobacter isolates wit...

Additional file 1: of Identfication of viral and bacterial etiologic agents of the pertussis-like syndrome in children under 5âyears old hospitalized

Stephanie Saiki-Macedo (5938649)
Jorge Valverde-Ezeta (5938647)
Angela Cornejo-Tapia (3950183)
Maria Castillo (5718830)
VerĂłnica Petrozzi-Helasvuo (6249095)
Miguel Aguilar-Luis (3949547)
Luis del Valle (4664446)
Erico Cieza-Mora (3950186)
Carlos Bada (3950189)
Olguita del Aguila (5180339)
Wilmer Silva-Caso (195994)
Johanna Martins-Luna (5237642)
Fernando Vasquez-Achaya (4592056)
Juana del Valle-Mendoza (2172505)

January 2019

Table S1. Demographics in children with a probable diagnosis of Pertussis, positives for respiratory...

Additional file 2: of Identfication of viral and bacterial etiologic agents of the pertussis-like syndrome in children under 5âyears old hospitalized

Stephanie Saiki-Macedo (5938649)
Jorge Valverde-Ezeta (5938647)
Angela Cornejo-Tapia (3950183)
Maria Castillo (5718830)
VerĂłnica Petrozzi-Helasvuo (6249095)
Miguel Aguilar-Luis (3949547)
Luis del Valle (4664446)
Erico Cieza-Mora (3950186)
Carlos Bada (3950189)
Olguita del Aguila (5180339)
Wilmer Silva-Caso (195994)
Johanna Martins-Luna (5237642)
Fernando Vasquez-Achaya (4592056)
Juana del Valle-Mendoza (2172505)

January 2019

Table S2. Clinical symptoms in hospitalized children with a probable diagnosis of Pertussis, positiv...

Additional file 2: Table S1. of Genomic insights from whole genome sequencing of four clonal outbreak Campylobacter jejuni assessed within the global C. jejuni population

Clifford Clark (3514856)
Chrystal Berry (3514853)
Matthew Walker (343875)
Aaron Petkau (3514859)
Dillon Barker (3514850)
Cai Guan (3514847)
Aleisha Reimer (3370232)
Eduardo Taboada (31427)

December 2016

Selected SNVs detected using NUCmer for comparing all outbreak isolates using 00â2425 as reference...

Additional file 1: of Insights into the impact of flhF inactivation on Campylobacter jejuni colonization of chick and mice gut

Fangzhe Ren (5881118)
Xiaofei Li (334285)
Haiyan Tang (3808186)
Qidong Jiang (5881124)
Xi Yun (5881127)
Lin Fang (5898)
Pingyu Huang (5881136)
Yuanyue Tang (5881139)
Qiuchun Li (4864117)
Jinlin Huang (1511983)
Xin-an Jiao (5881142)

October 2018

Figure S1. Identification of the C. jejuni isolate. Table S1. Primers used in this study. Table S2. ...

Additional file 4: of Identfication of viral and bacterial etiologic agents of the pertussis-like syndrome in children under 5âyears old hospitalized

Stephanie Saiki-Macedo (5938649)
Jorge Valverde-Ezeta (5938647)
Angela Cornejo-Tapia (3950183)
Maria Castillo (5718830)
VerĂłnica Petrozzi-Helasvuo (6249095)
Miguel Aguilar-Luis (3949547)
Luis del Valle (4664446)
Erico Cieza-Mora (3950186)
Carlos Bada (3950189)
Olguita del Aguila (5180339)
Wilmer Silva-Caso (195994)
Johanna Martins-Luna (5237642)
Fernando Vasquez-Achaya (4592056)
Juana del Valle-Mendoza (2172505)

January 2019

Table S4. Coinfections in hospitalized children with a probable diagnosis of Pertussis, positives fo...

Additional file 5: of Identfication of viral and bacterial etiologic agents of the pertussis-like syndrome in children under 5âyears old hospitalized

Stephanie Saiki-Macedo (5938649)
Jorge Valverde-Ezeta (5938647)
Angela Cornejo-Tapia (3950183)
Maria Castillo (5718830)
VerĂłnica Petrozzi-Helasvuo (6249095)
Miguel Aguilar-Luis (3949547)
Luis del Valle (4664446)
Erico Cieza-Mora (3950186)
Carlos Bada (3950189)
Olguita del Aguila (5180339)
Wilmer Silva-Caso (195994)
Johanna Martins-Luna (5237642)
Fernando Vasquez-Achaya (4592056)
Juana del Valle-Mendoza (2172505)

January 2019

Table S5. Complications among hospitalized children with a probable diagnosis of Pertussis, positive...

Additional file 2: of Diversity of virulence level phenotype of hypervirulent Klebsiella pneumoniae from different sequence type lineage

Qiucheng Shi (3233457)
Peng Lan (5699819)
Danyan Huang (5148011)
Xiaoting Hua (435699)
Yan Jiang (12139)
Jiancang Zhou (3233460)
Yunsong Yu (496103)

August 2018

Table S1. PCR primers used for studying Serotype and Virulence-Associated Genes of Klebsiella pneumo...

Additional file 2: of Prevalence, risk factors for infection and subtype distribution of the intestinal parasite Blastocystis sp. from a large-scale multi-center study in France

Dima El Safadi (736233)
Amandine Cian (653810)
Céline Nourrisson (653807)
Bruno Pereira (415597)
Christelle Morelle (3446330)
Patrick Bastien (68928)
Anne-Pauline Bellanger (3446333)
Françoise Botterel (43200)
Ermanno Candolfi (179298)
Guillaume Desoubeaux (3446336)
Laurence Lachaud (2636371)
Florent Morio (217685)
Christelle Pomares (312204)
Meja Rabodonirina (542035)
Ivan Wawrzyniak (329392)
Frédéric Delbac (329394)
Nausicaa Gantois (480716)
Gabriela Certad (111449)
Laurence Delhaes (153955)
Philippe Poirier (329391)
Eric Viscogliosi (111438)

August 2016

Post hoc comparison of the prevalence of Blastocystis sp. between age groups. (DOCX 14 kb

Additional file 2: of Rotavirus gastroenteritis in Indian children < 5 years hospitalized for diarrhoea, 2012 to 2016

Sidhartha Giri (2827025)
Nayana Nair (5541719)
Ann Mathew (6211175)
B. Manohar (6211178)
Anna Simon (302405)
Tejinder Singh (4747464)
S. Suresh Kumar (5920094)
M. Mathew (6211181)
Sudhir Babji (4268851)
Rashmi Arora (5541707)
C. Girish Kumar (6211184)
S. Venkatasubramanian (6211187)
Sanjay Mehendale (281610)
Mohan Gupte (5541713)
Gagandeep Kang (144643)

January 2019

Table S2. Association between rotavirus genotype and severity of diarrhoea. The file contains detail...

Jung Shim (3418757)
Ju Chang (3418751)
Sue Shin (652479)
Jin Moon (3418760)
Jae Ko (3418754)

June 2016

Distribution of group A rotavirus G and P genotypes according to the vaccination status (exclude inc...

Additional file 2: of Impact of the 10-valent pneumococcal conjugate vaccine on antimicrobial prescriptions in young children: a whole population study

Elias Eythorsson (5820515)
Samuel Sigurdsson (5820518)
Birgir Hrafnkelsson (5820521)
Helga ErlendsdĂłttir (5820527)
Ăsgeir Haraldsson (5820530)
Karl Kristinsson (5820524)

October 2018

Table S1. The proportion of linked antimicrobials associated with each diagnostic group by calendar ...

Additional file 1: of Impact of early events and lifestyle on the gut microbiota and metabolic phenotypes in young school-age children

Huanzi Zhong (435045)
John Penders (396322)
Zhun Shi (1788565)
Huahui Ren (6175241)
Kaiye Cai (466845)
Chao Fang (456315)
Qiuxia Ding (5729522)
Carel Thijs (112720)
Ellen Blaak (382092)
Coen Stehouwer (3404234)
Xun Xu (276108)
Huanming Yang (5905)
Jian Wang (5901)
Jun Wang (5906)
Daisy Jonkers (325717)
Ad Masclee (325723)
Susanne Brix (331912)
Junhua Li (125998)
Ilja Arts (5486738)
Karsten Kristiansen (175581)

January 2019

Table S1. Summary of phenotypic information of Dutch children at 6â9âyears of age. Table S2. Seq...

Additional file 6: of Î˛2-Adrenergic receptor promoter haplotype influences the severity of acute viral respiratory tract infection during infancy: a prospective cohort study

Pingsheng Wu (165445)
Emma Larkin (223802)
Sara Reiss (3548174)
Kecia Carroll (3548177)
Marshall Summar (509428)
Patricia Minton (356855)
Kimberly Woodward (3548168)
Zhouwen Liu (356853)
Jessica Islam (3548180)
Tina Hartert (3548171)
Paul Moore (469661)

September 2015

BSS distribution stratified by copy number of combined haplotype TTGGC and separated by race. The sc...

Additional file 2: of Clinical impact of the type VI secretion system on virulence of Campylobacter species during infection

Abstract

Extracted data

Additional file 2: of Clinical impact of the type VI secretion system on virulence of Campylobacter species during infection

Abstract

Extracted data

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