MOESM5 of LLIN Evaluation in Uganda Project (LLINEUP): a cross-sectional survey of species diversity and insecticide resistance in 48 districts of Uganda

Insecticide resistance and its association with target-site mutations in natural populations of Anopheles gambiae from eastern Uganda

Ramphul, U.
Boase, T.
Bass, C.
Okedi, L. M.
Donnelly, Martin
Muller, Pie

November 2009

Insecticide resistance in Anopheles gambiae threatens the success of malaria vector control programm...

Analysis-ready datasets for insecticide resistance phenotype and genotype frequency in African malaria vectors

Moyes, CL
Wiebe, A
Gleave, K
Trett, A
Hancock, PA
Padonou, GG
Chouaïbou, MS
Sovi, A
Abuelmaali, SA
Ochomo, E
Antonio-Nkondjio, C
Dengela, D
Kawada, H
Dabire, RK
Donnelly, MJ
Mbogo, C
Fornadel, C
Coleman, M

July 2019

The impact of insecticide resistance in malaria vectors is poorly understood and quantified. Here a ...

Insecticide resistance and its association with target-site mutations in natural populations of Anopheles gambiae from eastern Uganda

Ramphul, U.
Boase, T.
Bass, C.
Okedi, L. M.
Donnelly, Martin
Muller, Pie

November 2009

Insecticide resistance in Anopheles gambiae threatens the success of malaria vector control programm...

MOESM1 of LLIN Evaluation in Uganda Project (LLINEUP): a cross-sectional survey of species diversity and insecticide resistance in 48 districts of Uganda

Amy Lynd (36646)
Samuel Gonahasa (6456752)
Sarah Staedke (3569942)
Ambrose Oruni (5940008)
Catherine Maiteki-Sebuguzi (51371)
Grant Dorsey (18025)
Jimmy Opigo (3934103)
Adoke Yeka (18017)
Agaba Katureebe (340952)
Mary Kyohere (6456755)
Janet Hemingway (23878)
Moses Kamya (10698)
Martin Donnelly (191434)

March 2019

Additional file 1: Figure S1. The density of female An. funestus (s.l.) was analysed as a function o...

MOESM2 of LLIN Evaluation in Uganda Project (LLINEUP): a cross-sectional survey of species diversity and insecticide resistance in 48 districts of Uganda

Amy Lynd (36646)
Samuel Gonahasa (6456752)
Sarah Staedke (3569942)
Ambrose Oruni (5940008)
Catherine Maiteki-Sebuguzi (51371)
Grant Dorsey (18025)
Jimmy Opigo (3934103)
Adoke Yeka (18017)
Agaba Katureebe (340952)
Mary Kyohere (6456755)
Janet Hemingway (23878)
Moses Kamya (10698)
Martin Donnelly (191434)

March 2019

Additional file 2: Figure S2. Phylogenetic tree constructed from mitochondrial cox1 gene sequence of...

MOESM3 of LLIN Evaluation in Uganda Project (LLINEUP): a cross-sectional survey of species diversity and insecticide resistance in 48 districts of Uganda

Amy Lynd (36646)
Samuel Gonahasa (6456752)
Sarah Staedke (3569942)
Ambrose Oruni (5940008)
Catherine Maiteki-Sebuguzi (51371)
Grant Dorsey (18025)
Jimmy Opigo (3934103)
Adoke Yeka (18017)
Agaba Katureebe (340952)
Mary Kyohere (6456755)
Janet Hemingway (23878)
Moses Kamya (10698)
Martin Donnelly (191434)

March 2019

Additional file 3: Figure S3. Sporozoite infection rates by sub region. a P. falciparum sporozoite i...

MOESM7 of Reduced-representation sequencing identifies small effective population sizes of Anopheles gambiae in the north-western Lake Victoria basin, Uganda

Rachel Wiltshire (5599418)
Christina Bergey (5599421)
Jonathan Kayondo (4494439)
Josephine Birungi (10434)
Louis Mukwaya (94659)
Scott Emrich (538064)
Nora Besansky (3271371)
Frank Collins (232095)

August 2018

Additional file 7: Figure S3. Generalized linear model plot of genetic differentiation against log g...

MOESM5 of Reduced-representation sequencing identifies small effective population sizes of Anopheles gambiae in the north-western Lake Victoria basin, Uganda

Rachel Wiltshire (5599418)
Christina Bergey (5599421)
Jonathan Kayondo (4494439)
Josephine Birungi (10434)
Louis Mukwaya (94659)
Scott Emrich (538064)
Nora Besansky (3271371)
Frank Collins (232095)

August 2018

Additional file 5: Figure S1. (aâd) PCA plots of An. gambiae chromosomes not shown in the main tex...

MOESM6 of Reduced-representation sequencing identifies small effective population sizes of Anopheles gambiae in the north-western Lake Victoria basin, Uganda

Rachel Wiltshire (5599418)
Christina Bergey (5599421)
Jonathan Kayondo (4494439)
Josephine Birungi (10434)
Louis Mukwaya (94659)
Scott Emrich (538064)
Nora Besansky (3271371)
Frank Collins (232095)

August 2018

Additional file 6: Figure S2. ADMIXTURE bar plot of chromosome 2L SNPs (K = 2) showing probable ance...

LLIN Evaluation in Uganda Project (LLINEUP): a cross-sectional survey of species diversity and insecticide resistance in 48 districts of Uganda

Amy Lynd
Samuel Gonahasa
Sarah G. Staedke
Ambrose Oruni
Catherine Maiteki-Sebuguzi
Grant Dorsey
Jimmy Opigo
Adoke Yeka
Agaba Katureebe
Mary Kyohere
Janet Hemingway
Moses R. Kamya
Martin J. Donnelly

March 2019

Abstract Background Long-lasting insecticidal nets (LLINs) are the principal tool for malaria contro...

MOESM1 of Reduced-representation sequencing identifies small effective population sizes of Anopheles gambiae in the north-western Lake Victoria basin, Uganda

Rachel Wiltshire (5599418)
Christina Bergey (5599421)
Jonathan Kayondo (4494439)
Josephine Birungi (10434)
Louis Mukwaya (94659)
Scott Emrich (538064)
Nora Besansky (3271371)
Frank Collins (232095)

August 2018

Additional file 1: Table S1. GPS co-ordinates and distances between entomological sampling sites

MOESM2 of Reduced-representation sequencing identifies small effective population sizes of Anopheles gambiae in the north-western Lake Victoria basin, Uganda

Rachel Wiltshire (5599418)
Christina Bergey (5599421)
Jonathan Kayondo (4494439)
Josephine Birungi (10434)
Louis Mukwaya (94659)
Scott Emrich (538064)
Nora Besansky (3271371)
Frank Collins (232095)

August 2018

Additional file 2: Table S2. Bioinformatics pipeline detailing software programs and parameters used...

MOESM4 of Reduced-representation sequencing identifies small effective population sizes of Anopheles gambiae in the north-western Lake Victoria basin, Uganda

Rachel Wiltshire (5599418)
Christina Bergey (5599421)
Jonathan Kayondo (4494439)
Josephine Birungi (10434)
Louis Mukwaya (94659)
Scott Emrich (538064)
Nora Besansky (3271371)
Frank Collins (232095)

August 2018

Additional file 4: Table S4. Chromosome 2L inversion molecular karyotype results

Replication Data for: Analysis-ready datasets for insecticide resistance phenotype and genotype frequency in African malaria vectors

Moyes, Catherine L.
Wiebe, Antoinette
Gleave, Katherine
Trett, Anna
Hancock, Penelope A.
Padonou, Germain Gil
Chouaïbou, Mouhamadou S.
Sovi, Arthur
Abuelmaali, Sara A.
Ochomo, Eric
Antonio-Nkondjio, Christophe
Dengela, Dereje
Kawada, Hitoshi
Dabire, Roch K.
Donnelly, Martin J.
Mbogo, Charles
Fornadel, Christen
Coleman, Michael

The impact of insecticide resistance in malaria vectors is poorly understood and quantified. Here a ...

MOESM4 of Rise of multiple insecticide resistance in Anopheles funestus in Malawi: a major concern for malaria vector control

Jacob Riveron (3440567)
Martin Chiumia (3429296)
Benjamin Menze (3574934)
Kayla Barnes (3574937)
Helen Irving (29081)
Sulaiman Ibrahim (3574931)
Gareth Weedall (3419597)
Themba Mzilahowa (76358)
Charles Wondji (3419594)

September 2015

Additional file 4: Figure S2. Correlation between haplotype distribution of VGSC gene and resistance...

Insecticide resistance and its association with target-site mutations in natural populations of Anopheles gambiae from eastern Uganda

Ramphul, U.
Boase, T.
Bass, C.
Okedi, L. M.
Donnelly, Martin
Muller, Pie

November 2009

Insecticide resistance in Anopheles gambiae threatens the success of malaria vector control programm...

Analysis-ready datasets for insecticide resistance phenotype and genotype frequency in African malaria vectors

Moyes, CL
Wiebe, A
Gleave, K
Trett, A
Hancock, PA
Padonou, GG
Chouaïbou, MS
Sovi, A
Abuelmaali, SA
Ochomo, E
Antonio-Nkondjio, C
Dengela, D
Kawada, H
Dabire, RK
Donnelly, MJ
Mbogo, C
Fornadel, C
Coleman, M

July 2019

The impact of insecticide resistance in malaria vectors is poorly understood and quantified. Here a ...

Insecticide resistance and its association with target-site mutations in natural populations of Anopheles gambiae from eastern Uganda

Ramphul, U.
Boase, T.
Bass, C.
Okedi, L. M.
Donnelly, Martin
Muller, Pie

November 2009

Insecticide resistance in Anopheles gambiae threatens the success of malaria vector control programm...

MOESM1 of LLIN Evaluation in Uganda Project (LLINEUP): a cross-sectional survey of species diversity and insecticide resistance in 48 districts of Uganda

Amy Lynd (36646)
Samuel Gonahasa (6456752)
Sarah Staedke (3569942)
Ambrose Oruni (5940008)
Catherine Maiteki-Sebuguzi (51371)
Grant Dorsey (18025)
Jimmy Opigo (3934103)
Adoke Yeka (18017)
Agaba Katureebe (340952)
Mary Kyohere (6456755)
Janet Hemingway (23878)
Moses Kamya (10698)
Martin Donnelly (191434)

March 2019

Additional file 1: Figure S1. The density of female An. funestus (s.l.) was analysed as a function o...

MOESM2 of LLIN Evaluation in Uganda Project (LLINEUP): a cross-sectional survey of species diversity and insecticide resistance in 48 districts of Uganda

Amy Lynd (36646)
Samuel Gonahasa (6456752)
Sarah Staedke (3569942)
Ambrose Oruni (5940008)
Catherine Maiteki-Sebuguzi (51371)
Grant Dorsey (18025)
Jimmy Opigo (3934103)
Adoke Yeka (18017)
Agaba Katureebe (340952)
Mary Kyohere (6456755)
Janet Hemingway (23878)
Moses Kamya (10698)
Martin Donnelly (191434)

March 2019

Additional file 2: Figure S2. Phylogenetic tree constructed from mitochondrial cox1 gene sequence of...

MOESM3 of LLIN Evaluation in Uganda Project (LLINEUP): a cross-sectional survey of species diversity and insecticide resistance in 48 districts of Uganda

Amy Lynd (36646)
Samuel Gonahasa (6456752)
Sarah Staedke (3569942)
Ambrose Oruni (5940008)
Catherine Maiteki-Sebuguzi (51371)
Grant Dorsey (18025)
Jimmy Opigo (3934103)
Adoke Yeka (18017)
Agaba Katureebe (340952)
Mary Kyohere (6456755)
Janet Hemingway (23878)
Moses Kamya (10698)
Martin Donnelly (191434)

March 2019

Additional file 3: Figure S3. Sporozoite infection rates by sub region. a P. falciparum sporozoite i...

MOESM7 of Reduced-representation sequencing identifies small effective population sizes of Anopheles gambiae in the north-western Lake Victoria basin, Uganda

Rachel Wiltshire (5599418)
Christina Bergey (5599421)
Jonathan Kayondo (4494439)
Josephine Birungi (10434)
Louis Mukwaya (94659)
Scott Emrich (538064)
Nora Besansky (3271371)
Frank Collins (232095)

August 2018

Additional file 7: Figure S3. Generalized linear model plot of genetic differentiation against log g...

MOESM5 of Reduced-representation sequencing identifies small effective population sizes of Anopheles gambiae in the north-western Lake Victoria basin, Uganda

Rachel Wiltshire (5599418)
Christina Bergey (5599421)
Jonathan Kayondo (4494439)
Josephine Birungi (10434)
Louis Mukwaya (94659)
Scott Emrich (538064)
Nora Besansky (3271371)
Frank Collins (232095)

August 2018

Additional file 5: Figure S1. (aâd) PCA plots of An. gambiae chromosomes not shown in the main tex...

MOESM6 of Reduced-representation sequencing identifies small effective population sizes of Anopheles gambiae in the north-western Lake Victoria basin, Uganda

Rachel Wiltshire (5599418)
Christina Bergey (5599421)
Jonathan Kayondo (4494439)
Josephine Birungi (10434)
Louis Mukwaya (94659)
Scott Emrich (538064)
Nora Besansky (3271371)
Frank Collins (232095)

August 2018

Additional file 6: Figure S2. ADMIXTURE bar plot of chromosome 2L SNPs (K = 2) showing probable ance...

LLIN Evaluation in Uganda Project (LLINEUP): a cross-sectional survey of species diversity and insecticide resistance in 48 districts of Uganda

Amy Lynd
Samuel Gonahasa
Sarah G. Staedke
Ambrose Oruni
Catherine Maiteki-Sebuguzi
Grant Dorsey
Jimmy Opigo
Adoke Yeka
Agaba Katureebe
Mary Kyohere
Janet Hemingway
Moses R. Kamya
Martin J. Donnelly

March 2019

Abstract Background Long-lasting insecticidal nets (LLINs) are the principal tool for malaria contro...

MOESM1 of Reduced-representation sequencing identifies small effective population sizes of Anopheles gambiae in the north-western Lake Victoria basin, Uganda

Rachel Wiltshire (5599418)
Christina Bergey (5599421)
Jonathan Kayondo (4494439)
Josephine Birungi (10434)
Louis Mukwaya (94659)
Scott Emrich (538064)
Nora Besansky (3271371)
Frank Collins (232095)

August 2018

Additional file 1: Table S1. GPS co-ordinates and distances between entomological sampling sites

MOESM2 of Reduced-representation sequencing identifies small effective population sizes of Anopheles gambiae in the north-western Lake Victoria basin, Uganda

Rachel Wiltshire (5599418)
Christina Bergey (5599421)
Jonathan Kayondo (4494439)
Josephine Birungi (10434)
Louis Mukwaya (94659)
Scott Emrich (538064)
Nora Besansky (3271371)
Frank Collins (232095)

August 2018

Additional file 2: Table S2. Bioinformatics pipeline detailing software programs and parameters used...

MOESM4 of Reduced-representation sequencing identifies small effective population sizes of Anopheles gambiae in the north-western Lake Victoria basin, Uganda

Rachel Wiltshire (5599418)
Christina Bergey (5599421)
Jonathan Kayondo (4494439)
Josephine Birungi (10434)
Louis Mukwaya (94659)
Scott Emrich (538064)
Nora Besansky (3271371)
Frank Collins (232095)

August 2018

Additional file 4: Table S4. Chromosome 2L inversion molecular karyotype results

Replication Data for: Analysis-ready datasets for insecticide resistance phenotype and genotype frequency in African malaria vectors

Moyes, Catherine L.
Wiebe, Antoinette
Gleave, Katherine
Trett, Anna
Hancock, Penelope A.
Padonou, Germain Gil
Chouaïbou, Mouhamadou S.
Sovi, Arthur
Abuelmaali, Sara A.
Ochomo, Eric
Antonio-Nkondjio, Christophe
Dengela, Dereje
Kawada, Hitoshi
Dabire, Roch K.
Donnelly, Martin J.
Mbogo, Charles
Fornadel, Christen
Coleman, Michael

The impact of insecticide resistance in malaria vectors is poorly understood and quantified. Here a ...

MOESM4 of Rise of multiple insecticide resistance in Anopheles funestus in Malawi: a major concern for malaria vector control

Jacob Riveron (3440567)
Martin Chiumia (3429296)
Benjamin Menze (3574934)
Kayla Barnes (3574937)
Helen Irving (29081)
Sulaiman Ibrahim (3574931)
Gareth Weedall (3419597)
Themba Mzilahowa (76358)
Charles Wondji (3419594)

September 2015

Additional file 4: Figure S2. Correlation between haplotype distribution of VGSC gene and resistance...

Insecticide resistance and its association with target-site mutations in natural populations of Anopheles gambiae from eastern Uganda

Ramphul, U.
Boase, T.
Bass, C.
Okedi, L. M.
Donnelly, Martin
Muller, Pie

November 2009

Insecticide resistance in Anopheles gambiae threatens the success of malaria vector control programm...

Analysis-ready datasets for insecticide resistance phenotype and genotype frequency in African malaria vectors

Moyes, CL
Wiebe, A
Gleave, K
Trett, A
Hancock, PA
Padonou, GG
Chouaïbou, MS
Sovi, A
Abuelmaali, SA
Ochomo, E
Antonio-Nkondjio, C
Dengela, D
Kawada, H
Dabire, RK
Donnelly, MJ
Mbogo, C
Fornadel, C
Coleman, M

July 2019

The impact of insecticide resistance in malaria vectors is poorly understood and quantified. Here a ...

Insecticide resistance and its association with target-site mutations in natural populations of Anopheles gambiae from eastern Uganda

Ramphul, U.
Boase, T.
Bass, C.
Okedi, L. M.
Donnelly, Martin
Muller, Pie

November 2009

Insecticide resistance in Anopheles gambiae threatens the success of malaria vector control programm...

MOESM5 of LLIN Evaluation in Uganda Project (LLINEUP): a cross-sectional survey of species diversity and insecticide resistance in 48 districts of Uganda

Abstract

Extracted data

MOESM5 of LLIN Evaluation in Uganda Project (LLINEUP): a cross-sectional survey of species diversity and insecticide resistance in 48 districts of Uganda

Abstract

Extracted data

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