An example of miRDeep output for T.prof_5p_16873.

(A) Predicted secondary structure of miRNA precursor with the mature, star and loop sequences (highlighted in red, yellow and purple, respectively). The scores associated to the miRNA, the read counts for mature, star and loop sequences and the total read count are also given. (B) Sequences of the predicted miRNA precursors mapped to the mature, star and loop sequences on the genome (obs line) and the experimental sequence reported in miRBase (exp line). The frequency (reads column) and mismatches of the read with the genomic sequence (mm column) are also given with the mismatches shown in capital letters.