Table S1. Genome sequencing and assembly statistics (coverages based on a 150Mb genome size; lengths are in bp). (DOCX 43 kb
Figure S5. REVIGO summary scatterplot for 27 over-represented Biological Process GO terms in CAFE-ex...
Figure S9. REVIGO summary scatterplot for 12 over-represented Molecular Function GO terms in CAFE-co...
Figure S6. REVIGO summary scatterplot for 17 over-represented Molecular Function GO terms in CAFE-ex...
Table S3. D. subobscura mitogenome gene content and order (lengths in bp). (DOCX 45 kb
Table S8. Number of syntenic blocks between D. subobscura and increasingly distant relatives. (DOCX ...
Table S9. Average size of the syntenic block (in Mb) between D. subobscura and increasingly distant ...
Figure S2. OrthoMCL analysis of gene families in D. subobscura. Numbers of orthoMCL clusters and of ...
Figure S3. CAFE analysis of the evolution of gene family size in D. subobscura. Shown on each branch...
Figure S1. RelTime timetree of 14 Drosophila species obtained using the maximum-likelihood tree-topo...
Table S7. Over represented GO Terms among CAFE significantly contracted gene families in D. subobscu...
Table S6. Over represented GO Terms among CAFE significantly expanded gene families in D. subobscura...
Figure S4. CAFE analysis of the evolution of gene family size in D. subobscura. Shown on each branch...
Table S5. Optimal CAFE model selection for the evolution of gene family size along the 14 Drosophila...
Figure S8. REVIGO summary scatterplot for 51 over-represented Biological Process GO terms in CAFE-co...
Table S10. Synteny analysis of inversion breakpoints. Provided is breakpoint information for 12 inve...
Figure S5. REVIGO summary scatterplot for 27 over-represented Biological Process GO terms in CAFE-ex...
Figure S9. REVIGO summary scatterplot for 12 over-represented Molecular Function GO terms in CAFE-co...
Figure S6. REVIGO summary scatterplot for 17 over-represented Molecular Function GO terms in CAFE-ex...
Table S3. D. subobscura mitogenome gene content and order (lengths in bp). (DOCX 45 kb
Table S8. Number of syntenic blocks between D. subobscura and increasingly distant relatives. (DOCX ...
Table S9. Average size of the syntenic block (in Mb) between D. subobscura and increasingly distant ...
Figure S2. OrthoMCL analysis of gene families in D. subobscura. Numbers of orthoMCL clusters and of ...
Figure S3. CAFE analysis of the evolution of gene family size in D. subobscura. Shown on each branch...
Figure S1. RelTime timetree of 14 Drosophila species obtained using the maximum-likelihood tree-topo...
Table S7. Over represented GO Terms among CAFE significantly contracted gene families in D. subobscu...
Table S6. Over represented GO Terms among CAFE significantly expanded gene families in D. subobscura...
Figure S4. CAFE analysis of the evolution of gene family size in D. subobscura. Shown on each branch...
Table S5. Optimal CAFE model selection for the evolution of gene family size along the 14 Drosophila...
Figure S8. REVIGO summary scatterplot for 51 over-represented Biological Process GO terms in CAFE-co...
Table S10. Synteny analysis of inversion breakpoints. Provided is breakpoint information for 12 inve...
Figure S5. REVIGO summary scatterplot for 27 over-represented Biological Process GO terms in CAFE-ex...
Figure S9. REVIGO summary scatterplot for 12 over-represented Molecular Function GO terms in CAFE-co...
Figure S6. REVIGO summary scatterplot for 17 over-represented Molecular Function GO terms in CAFE-ex...
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