All_bacteria_Subsystems_DESeq_results. This Excel spreadsheet contains the differential expression by SEED Subsystem hierarchies between ICD and control samples for community-wide metatranscriptomes. The first tab contains a description of all hierarchies included in the analyses. The remaining tabs contain results corresponding to the level 1, level 2, and level 3 hierarchies. The controlMean refers to mean counts of the control samples. ExperimentalMean refers to mean counts of the ICD samples. Log2 fold changes refer to ICD relative to control. The p values are adjusted for multiple hypothesis testing. (XLSX 444 kb
Figure S1. Analysis of relative abundance of PolyFermS commensal bacteria phyla. Relative abundance ...
Additional file 1: Figure S1. The selection criteria of bacteria for the ecological network analysis...
Figure S1. Analysis of murine fecal metaproteome data in the study of Tanca et al. using MetaPro-IQ ...
Prevotella_Subsystems_DESeq_results. This Excel spreadsheet contains the differential expression by ...
Campylobacter_Subsystems_DESeq_results. This Excel spreadsheet contains the differential expression ...
Macaque_bacteria_genus_DESeq_results. This tab-separated file contains the DESeq2 output of differen...
BACKGROUND:Idiopathic chronic diarrhea (ICD) is a common cause of morbidity and mortality among juve...
Abstract Background Idiopathic chronic diarrhea (ICD) is a common cause of morbidity and mortality a...
Detailed views of taxonomic contributions to specific components of the glycolysis/gluconeogenesis p...
Results of subspecies-level analysis of E. coli and other microbes in the metagenomes using ConStrai...
This Excel table provides the relative abundance of microbiota in donor mice and in recipient mice a...
Figure S8. Relative abundance of LEfSe-identified enriched KEGG pathways in the synbiotic supplement...
Additional file 2: Fig. S2. The relative abundance of significantly different genera in fecal metage...
(A) Meta-analysis showing changes in unweighted UniFrac-based beta diversity in a published cohort i...
Indications in original studies for differential abundance of the three pathofunctions, namely, the ...
Figure S1. Analysis of relative abundance of PolyFermS commensal bacteria phyla. Relative abundance ...
Additional file 1: Figure S1. The selection criteria of bacteria for the ecological network analysis...
Figure S1. Analysis of murine fecal metaproteome data in the study of Tanca et al. using MetaPro-IQ ...
Prevotella_Subsystems_DESeq_results. This Excel spreadsheet contains the differential expression by ...
Campylobacter_Subsystems_DESeq_results. This Excel spreadsheet contains the differential expression ...
Macaque_bacteria_genus_DESeq_results. This tab-separated file contains the DESeq2 output of differen...
BACKGROUND:Idiopathic chronic diarrhea (ICD) is a common cause of morbidity and mortality among juve...
Abstract Background Idiopathic chronic diarrhea (ICD) is a common cause of morbidity and mortality a...
Detailed views of taxonomic contributions to specific components of the glycolysis/gluconeogenesis p...
Results of subspecies-level analysis of E. coli and other microbes in the metagenomes using ConStrai...
This Excel table provides the relative abundance of microbiota in donor mice and in recipient mice a...
Figure S8. Relative abundance of LEfSe-identified enriched KEGG pathways in the synbiotic supplement...
Additional file 2: Fig. S2. The relative abundance of significantly different genera in fecal metage...
(A) Meta-analysis showing changes in unweighted UniFrac-based beta diversity in a published cohort i...
Indications in original studies for differential abundance of the three pathofunctions, namely, the ...
Figure S1. Analysis of relative abundance of PolyFermS commensal bacteria phyla. Relative abundance ...
Additional file 1: Figure S1. The selection criteria of bacteria for the ecological network analysis...
Figure S1. Analysis of murine fecal metaproteome data in the study of Tanca et al. using MetaPro-IQ ...