MOESM3 of Discovery of potential pathways for biological conversion of poplar wood into lipids by co-fermentation of Rhodococci strains

Table_3_Genome Sequencing and Comparative Transcriptomics Provide a Holistic View of 4-Nitrophenol Degradation and Concurrent Fatty Acid Catabolism by Rhodococcus sp. Strain BUPNP1.DOCX

Kriti Sengupta (6173039)
Martin T. Swain (3290154)
Paul G. Livingstone (6102023)
David E. Whitworth (252532)
Pradipta Saha (6173042)

January 2019

Rhodococcus sp.strain BUPNP1 can utilize the priority environmental pollutant 4-nitrophenol (4-NP) a...

Omics analyses and biochemical study of Phlebiopsis gigantea elucidate its degradation strategy of wood extractives

Mana Iwata
Ana Gutiérrez
Gisela Marques
Grzegorz Sabat
Philip J. Kersten
Daniel Cullen
Jennifer M. Bhatnagar
Jagjit Yadav
Anna Lipzen
Yuko Yoshinaga
Aditi Sharma
Catherine Adam
Christopher Daum
Vivian Ng
Igor V. Grigoriev
Chiaki Hori

June 2021

Abstract Wood extractives, solvent-soluble fractions of woody biomass, are considered to be a factor...

Fungal Strategies for Lignin Degradation

Sigoillot, Jean-Claude
Berrin, Jean-Guy
Bey, Mathieu
Lesage-Meessen, Laurence
Levasseur, Anthony
Lomascolo, Anne
Record, Eric
Boukhris-uzan, Eva

January 2012

Document Type : Book ChapterA number of microorganisms, bacteria and filamentous fungi, are able to ...

MOESM2 of Discovery of potential pathways for biological conversion of poplar wood into lipids by co-fermentation of Rhodococci strains

Xiaolu Li (586812)
Yucai He (6486572)
Libing Zhang (1481890)
Zhangyang Xu (3617816)
Haoxi Ben (1277688)
Matthew Gaffrey (6486584)
Yongfu Yang (5162450)
Shihui Yang (239437)
Joshua Yuan (4480783)
Wei-Jun Qian (538623)
Bin Yang (103252)

March 2019

Additional file 2: Table S1. Normalized global proteome data of spectral count for the lysate and se...

Discovery of potential pathways for biological conversion of poplar wood into lipids by co-fermentation of Rhodococci strains

Xiaolu Li
Yucai He
Libing Zhang
Zhangyang Xu
Haoxi Ben
Matthew J. Gaffrey
Yongfu Yang
Shihui Yang
Joshua S. Yuan
Wei-Jun Qian
Bin Yang

March 2019

Abstract Background Biological routes for utilizing both carbohydrates and lignin are important to r...

MOESM1 of Hydrolysis of untreated lignocellulosic feedstock is independent of S-lignin composition in newly classified anaerobic fungal isolate, Piromyces sp. UH3-1

Casey Hooker (5902844)
Ethan Hillman (5902847)
Jonathan Overton (5902850)
Adrian Ortiz-Velez (5902853)
Makayla Schacht (5902856)
Abigail Hunnicutt (5902859)
Nathan Mosier (5902862)
Kevin Solomon (3596000)

October 2018

Additional file 1: Table S1. NREL compositional analysis of the renewable plant biomass used in this...

Identifying Adaptations that Promote Softwood Utilization by the White-rot Basidiomycete Fungus, Phanerochaete carnosa

MacDonald, Jacqueline

December 2012

Softwood is the predominant form of land plant biomass in the Northern hemisphere, and is among the ...

MOESM2 of Lipid metabolism of phenol-tolerant Rhodococcus opacus strains for lignin bioconversion

William Henson (6163526)
Fong-Fu Hsu (256082)
Gautam Dantas (484525)
Tae Moon (6163532)
Marcus Foston (2113672)

December 2018

Additional file 2: Table S1. Excel file containing the lipid library and lipid library matches from ...

Integrative omics analyses of the ligninolytic Rhodosporidium fluviale LM-2 disclose catabolic pathways for biobased chemical production

Nathália Vilela
Geizecler Tomazetto
Thiago Augusto Gonçalves
Victoria Sodré
Gabriela Felix Persinoti
Eduardo Cruz Moraes
Arthur Henrique Cavalcante de Oliveira
Stephanie Nemesio da Silva
Taícia Pacheco Fill
André Damasio
Fabio Marcio Squina

January 2023

Abstract Background Lignin is an attractive alternative for producing biobased chemicals. It is the ...

Table_1_Wood degradation by Fomitiporia mediterranea M. Fischer: Physiologic, metabolomic and proteomic approaches.XLSX

Marion Schilling (13862768)
Alessandra Maia-Grondard (231133)
Raymonde Baltenweck (4988264)
Emilie Robert (6665069)
Philippe Hugueney (4988255)
Christophe Bertsch (42869)
Sibylle Farine (42872)
Eric Gelhaye (487818)

September 2022

Fomitiporia mediterranea (Fmed) is one of the main fungal species found in grapevine wood rot, also ...

MOESM1 of Comparative analysis of the secretomes of Schizophyllum commune and other wood-decay basidiomycetes during solid-state fermentation reveals its unique lignocellulose-degrading enzyme system

Ning Zhu (316672)
Jiawen Liu (3410771)
Jinshui Yang (3410774)
Yujian Lin (3410765)
Yi Yang (116183)
Lei Ji (318794)
Meng Li (79487)
Hongli Yuan (3410768)

February 2016

Additional file 1: Figure S1. Pectin lyase and lignin peroxidase activities of four fungi during SSF...

MOESM2 of Utilization of simultaneous saccharification and fermentation residues as feedstock for lipid accumulation in Rhodococcus opacus

Rosemary Le (4480786)
Parthapratim Das (1754011)
Kristina Mahan (4480780)
Seth Anderson (3287457)
Tyrone Wells (1537015)
Joshua Yuan (4480783)
Arthur Ragauskas (19610)

September 2017

Additional file 2: Figure S1. Summary of sugars present in DAP-SSF residue before and after fermenta...

Transcriptome analysis of the brown rot fungus Gloeophyllum trabeum during lignocellulose degradation.

Kiwamu Umezawa
Mai Niikura
Yuka Kojima
Barry Goodell
Makoto Yoshida

January 2020

Brown rot fungi have great potential in biorefinery wood conversion systems because they are the pri...

Unraveling the basal angiosperm cinnamyl alcohol dehydrogenase (CAD) genes that are involved in lignin biosynthesis

Xu, C.
Stott, G.
Barclay, M.
Liang, H.

January 2014

Biomass is biological material derived from living organisms that can be used for fuel and energy so...

MOESM1 of AA16, a new lytic polysaccharide monooxygenase family identified in fungal secretomes

Camille Filiatrault-Chastel (6473090)
David Navarro (3557636)
Mireille Haon (3504857)
Sacha Grisel (3916664)
Isabelle Herpoël-Gimbert (5546585)
Didier Chevret (190602)
Mathieu Fanuel (2629327)
Bernard Henrissat (31550)
Senta Heiss-Blanquet (3390185)
Antoine Margeot (4103626)
Jean-Guy Berrin (488784)

March 2019

Additional file 1: Table S1. Protein concentration (determined by BCA assay) of the secretomes of fi...

Table_3_Genome Sequencing and Comparative Transcriptomics Provide a Holistic View of 4-Nitrophenol Degradation and Concurrent Fatty Acid Catabolism by Rhodococcus sp. Strain BUPNP1.DOCX

Kriti Sengupta (6173039)
Martin T. Swain (3290154)
Paul G. Livingstone (6102023)
David E. Whitworth (252532)
Pradipta Saha (6173042)

January 2019

Rhodococcus sp.strain BUPNP1 can utilize the priority environmental pollutant 4-nitrophenol (4-NP) a...

Omics analyses and biochemical study of Phlebiopsis gigantea elucidate its degradation strategy of wood extractives

Mana Iwata
Ana Gutiérrez
Gisela Marques
Grzegorz Sabat
Philip J. Kersten
Daniel Cullen
Jennifer M. Bhatnagar
Jagjit Yadav
Anna Lipzen
Yuko Yoshinaga
Aditi Sharma
Catherine Adam
Christopher Daum
Vivian Ng
Igor V. Grigoriev
Chiaki Hori

June 2021

Abstract Wood extractives, solvent-soluble fractions of woody biomass, are considered to be a factor...

Fungal Strategies for Lignin Degradation

Sigoillot, Jean-Claude
Berrin, Jean-Guy
Bey, Mathieu
Lesage-Meessen, Laurence
Levasseur, Anthony
Lomascolo, Anne
Record, Eric
Boukhris-uzan, Eva

January 2012

Document Type : Book ChapterA number of microorganisms, bacteria and filamentous fungi, are able to ...

MOESM2 of Discovery of potential pathways for biological conversion of poplar wood into lipids by co-fermentation of Rhodococci strains

Xiaolu Li (586812)
Yucai He (6486572)
Libing Zhang (1481890)
Zhangyang Xu (3617816)
Haoxi Ben (1277688)
Matthew Gaffrey (6486584)
Yongfu Yang (5162450)
Shihui Yang (239437)
Joshua Yuan (4480783)
Wei-Jun Qian (538623)
Bin Yang (103252)

March 2019

Additional file 2: Table S1. Normalized global proteome data of spectral count for the lysate and se...

Discovery of potential pathways for biological conversion of poplar wood into lipids by co-fermentation of Rhodococci strains

Xiaolu Li
Yucai He
Libing Zhang
Zhangyang Xu
Haoxi Ben
Matthew J. Gaffrey
Yongfu Yang
Shihui Yang
Joshua S. Yuan
Wei-Jun Qian
Bin Yang

March 2019

Abstract Background Biological routes for utilizing both carbohydrates and lignin are important to r...

MOESM1 of Hydrolysis of untreated lignocellulosic feedstock is independent of S-lignin composition in newly classified anaerobic fungal isolate, Piromyces sp. UH3-1

Casey Hooker (5902844)
Ethan Hillman (5902847)
Jonathan Overton (5902850)
Adrian Ortiz-Velez (5902853)
Makayla Schacht (5902856)
Abigail Hunnicutt (5902859)
Nathan Mosier (5902862)
Kevin Solomon (3596000)

October 2018

Additional file 1: Table S1. NREL compositional analysis of the renewable plant biomass used in this...

Identifying Adaptations that Promote Softwood Utilization by the White-rot Basidiomycete Fungus, Phanerochaete carnosa

MacDonald, Jacqueline

December 2012

Softwood is the predominant form of land plant biomass in the Northern hemisphere, and is among the ...

MOESM2 of Lipid metabolism of phenol-tolerant Rhodococcus opacus strains for lignin bioconversion

William Henson (6163526)
Fong-Fu Hsu (256082)
Gautam Dantas (484525)
Tae Moon (6163532)
Marcus Foston (2113672)

December 2018

Additional file 2: Table S1. Excel file containing the lipid library and lipid library matches from ...

Integrative omics analyses of the ligninolytic Rhodosporidium fluviale LM-2 disclose catabolic pathways for biobased chemical production

Nathália Vilela
Geizecler Tomazetto
Thiago Augusto Gonçalves
Victoria Sodré
Gabriela Felix Persinoti
Eduardo Cruz Moraes
Arthur Henrique Cavalcante de Oliveira
Stephanie Nemesio da Silva
Taícia Pacheco Fill
André Damasio
Fabio Marcio Squina

January 2023

Abstract Background Lignin is an attractive alternative for producing biobased chemicals. It is the ...

Table_1_Wood degradation by Fomitiporia mediterranea M. Fischer: Physiologic, metabolomic and proteomic approaches.XLSX

Marion Schilling (13862768)
Alessandra Maia-Grondard (231133)
Raymonde Baltenweck (4988264)
Emilie Robert (6665069)
Philippe Hugueney (4988255)
Christophe Bertsch (42869)
Sibylle Farine (42872)
Eric Gelhaye (487818)

September 2022

Fomitiporia mediterranea (Fmed) is one of the main fungal species found in grapevine wood rot, also ...

MOESM1 of Comparative analysis of the secretomes of Schizophyllum commune and other wood-decay basidiomycetes during solid-state fermentation reveals its unique lignocellulose-degrading enzyme system

Ning Zhu (316672)
Jiawen Liu (3410771)
Jinshui Yang (3410774)
Yujian Lin (3410765)
Yi Yang (116183)
Lei Ji (318794)
Meng Li (79487)
Hongli Yuan (3410768)

February 2016

Additional file 1: Figure S1. Pectin lyase and lignin peroxidase activities of four fungi during SSF...

MOESM2 of Utilization of simultaneous saccharification and fermentation residues as feedstock for lipid accumulation in Rhodococcus opacus

Rosemary Le (4480786)
Parthapratim Das (1754011)
Kristina Mahan (4480780)
Seth Anderson (3287457)
Tyrone Wells (1537015)
Joshua Yuan (4480783)
Arthur Ragauskas (19610)

September 2017

Additional file 2: Figure S1. Summary of sugars present in DAP-SSF residue before and after fermenta...

Transcriptome analysis of the brown rot fungus Gloeophyllum trabeum during lignocellulose degradation.

Kiwamu Umezawa
Mai Niikura
Yuka Kojima
Barry Goodell
Makoto Yoshida

January 2020

Brown rot fungi have great potential in biorefinery wood conversion systems because they are the pri...

Unraveling the basal angiosperm cinnamyl alcohol dehydrogenase (CAD) genes that are involved in lignin biosynthesis

Xu, C.
Stott, G.
Barclay, M.
Liang, H.

January 2014

Biomass is biological material derived from living organisms that can be used for fuel and energy so...

MOESM1 of AA16, a new lytic polysaccharide monooxygenase family identified in fungal secretomes

Camille Filiatrault-Chastel (6473090)
David Navarro (3557636)
Mireille Haon (3504857)
Sacha Grisel (3916664)
Isabelle Herpoël-Gimbert (5546585)
Didier Chevret (190602)
Mathieu Fanuel (2629327)
Bernard Henrissat (31550)
Senta Heiss-Blanquet (3390185)
Antoine Margeot (4103626)
Jean-Guy Berrin (488784)

March 2019

Additional file 1: Table S1. Protein concentration (determined by BCA assay) of the secretomes of fi...

Table_3_Genome Sequencing and Comparative Transcriptomics Provide a Holistic View of 4-Nitrophenol Degradation and Concurrent Fatty Acid Catabolism by Rhodococcus sp. Strain BUPNP1.DOCX

Kriti Sengupta (6173039)
Martin T. Swain (3290154)
Paul G. Livingstone (6102023)
David E. Whitworth (252532)
Pradipta Saha (6173042)

January 2019

Rhodococcus sp.strain BUPNP1 can utilize the priority environmental pollutant 4-nitrophenol (4-NP) a...

Omics analyses and biochemical study of Phlebiopsis gigantea elucidate its degradation strategy of wood extractives

Mana Iwata
Ana Gutiérrez
Gisela Marques
Grzegorz Sabat
Philip J. Kersten
Daniel Cullen
Jennifer M. Bhatnagar
Jagjit Yadav
Anna Lipzen
Yuko Yoshinaga
Aditi Sharma
Catherine Adam
Christopher Daum
Vivian Ng
Igor V. Grigoriev
Chiaki Hori

June 2021

Abstract Wood extractives, solvent-soluble fractions of woody biomass, are considered to be a factor...

Fungal Strategies for Lignin Degradation

Sigoillot, Jean-Claude
Berrin, Jean-Guy
Bey, Mathieu
Lesage-Meessen, Laurence
Levasseur, Anthony
Lomascolo, Anne
Record, Eric
Boukhris-uzan, Eva

January 2012

Document Type : Book ChapterA number of microorganisms, bacteria and filamentous fungi, are able to ...

MOESM3 of Discovery of potential pathways for biological conversion of poplar wood into lipids by co-fermentation of Rhodococci strains

Abstract

Extracted data

MOESM3 of Discovery of potential pathways for biological conversion of poplar wood into lipids by co-fermentation of Rhodococci strains

Abstract

Extracted data

Related items

Related items