Additional file 12: of Conserved and specific features of Streptococcus pyogenes and Streptococcus agalactiae transcriptional landscapes

Figure S4. DNA sequence alignment and structure prediction of the 5′ UTR of the rplK-rplA operon encoding the ribosomal proteins L11 and L1. The DNA sequences of the 5′ UTR in ten streptococci and in E.coli were extracted from Genbank. The 5′ UTR sequence was predicted by checking for the presence of a potential − 10 box 7–9 nt upstream of the first nucleotide. Alignment and folding prediction were performed by using LocARNA ( http://rna.informatik.uni-freiburg.de/LocARNA ). Compatible base pairs are colored, where the hue shows the number of different types C-G, G-C, A-U, U-A, G-U or U-G of compatible base pairs in the corresponding columns. The saturation decreases with the number of incompatible base pairs.Accession numbers: S. agalactiae: NC_004368.1; S. gallolyticus: CP013688.1; S. infantarius: CP013689.1; S. mitis: CP014326.1; S. pneumoniae: CP016633.2; S. uberis: NC_012004.1; S. parauberis: CP025420.1; S. equi: LS483325.1; S. iniae: CP024843.1; E. coli: NC_000913.3. (PDF 566 kb