Additional file 1: of Biomarkers of tuber intake

Additional file 1: of Thermal processing of food reduces gut microbiota diversity of the host and triggers adaptation of the microbiota: evidence from two vertebrates

Zhimin Zhang (408803)
Dapeng Li (110598)

May 2018

This file contains all the supporting information that is associated with the manuscript, including ...

Additional file 1: of Interactive web-based lifestyle intervention and metabolic syndrome: findings from the Red Ruby (a randomized controlled trial)

Leila Jahangiry (3577940)
Davoud Shojaeizadeh (2742352)
Mahdieh Abbasalizad Farhangi (3577934)
Mehdi Yaseri (3577931)
Kazem Mohammad (48564)
Mahdi Najafi (3577937)
Ali Montazeri (1808071)

September 2015

Flow diagram of study. Flow diagram of the study based on the CONSORT statement. (DOC 35 kb

Additional file 1: of Gut microbial beta-glucuronidase and glycerol/diol dehydratase activity contribute to dietary heterocyclic amine biotransformation

Jianbo Zhang (115714)
Christophe Lacroix (35954)
Esther Wortmann (6709124)
Hans-Joachim Ruscheweyh (3165219)
Shinichi Sunagawa (125995)
Shana Sturla (5503748)
Clarissa Schwab (192593)

May 2019

Table S1. Substrate utilization and metabolite production of single strains in the presence of gluco...

Additional file 2: of Biomarkers of tuber intake

Xiaomin Zhou (310952)
Qian Gao (146991)
Giulia PraticĂ˛ (5482439)
Jie Chen (5892)
Lars Dragsted (3430244)

April 2019

Table S2. List of studies reporting non-specific biomarker for tubers intake. (DOCX 16 kb

Additional file 3: of Biomarkers of tuber intake

Xiaomin Zhou (310952)
Qian Gao (146991)
Giulia PraticĂ˛ (5482439)
Jie Chen (5892)
Lars Dragsted (3430244)

April 2019

Table S1. Components reported in potatoes and heated potato products. (DOCX 19 kb

Additional file 1: of Biomarkers of food intake for Allium vegetables

Giulia PraticĂ˛ (5482439)
Qian Gao (146991)
Claudine Manach (548951)
Lars Dragsted (3430244)

December 2018

Table S1. Chemical description of the candidate BFIs for Allium vegetables. Text S1 Validation crite...

Additional file 1: of Biomarkers of food intake for nuts and vegetable oils: an extensive literature search

Mar Garcia-Aloy (1784680)
Paul Hulshof (6486413)
Sheila Estruel-Amades (5471483)
Maryse OstĂŠ (6486422)
Maria Lankinen (208497)
Johanna Geleijnse (6188018)
Janette Goede (6486419)
Marynka Ulaszewska (3661876)
Fulvio Mattivi (161798)
Stephan Bakker (847658)
Ursula Schwab (93806)
Cristina Andres-Lacueva (1645708)

March 2019

Table S1. Nonrelevant food intake biomarkers for nuts. Table S2. Nonrelevant food intake biomarkers ...

Additional file 1: of Biomarker of food intake for assessing the consumption of dairy and egg products

Linda Münger (5803571)
Mar Garcia-Aloy (1784680)
Rosa Vázquez-Fresno (5803574)
Doreen Gille (805374)
Albert Rosana (5803577)
Anna Passerini (5803580)
María-Trinidad Soria-Florido (5803583)
Grégory Pimentel (4898785)
Tanvir Sajed (3864190)
David Wishart (13381)
Cristina Andres Lacueva (5803586)
Guy Vergères (805380)
Giulia Praticò (536570)

September 2018

Tables S1-S10. Describing the literature search criteria and the lists of studies and putative bioma...

Additional file 3: of A reverse metabolic approach to weaning: in silico identification of immune-beneficial infant gut bacteria, mining their metabolism for prebiotic feeds and sourcing these feeds in the natural product space

Samanta Michelini (5779523)
Biju Balakrishnan (5779526)
Silvia Parolo (150504)
Alice Matone (451692)
Jane Mullaney (4861261)
Wayne Young (485114)
Olivier Gasser (178779)
Clare Wall (4901581)
Corrado Priami (112396)
Rosario Lombardo (5156192)
Martin Kussmann (122292)

September 2018

Table S1. Example of relevant sentences from the pipeline for selected microbes. Supplemental Inform...

Additional file 2: of Gut microbiota of preterm infants supplemented with probiotics: sub-study of the ProPrems trial

Erica Plummer (5961608)
Dieter Bulach (368712)
Gerald Murray (4876939)
Susan Jacobs (5961611)
Sepehr Tabrizi (3638359)
Suzanne Garland (398522)

November 2018

Heatmap of bacterial abundance in all study specimens. Each vertical line represents the bacterial c...

Additional file 1: of Biomarkers of legume intake in human intervention and observational studies: a systematic review

Pedapati Sri Harsha (5735108)
Roshaida Wahab (5735111)
Mar Garcia-Aloy (1784680)
Francisco Madrid-Gambin (3839722)
Sheila Estruel-Amades (5471483)
Bernhard Watzl (422812)
Cristina AndrĂŠs-Lacueva (5735120)
Lorraine Brennan (449247)

September 2018

Table S1. Keywords related to the name and synonyms of the each potential biomarker of soy/pulses in...

Additional file 2: of Knomics-Biota - a system for exploratory analysis of human gut microbiota data

Daria Efimova (5940050)
Alexander Tyakht (2131003)
Anna Popenko (2131006)
Anatoly Vasilyev (5940053)
Ilya Altukhov (3455018)
Nikita Dovidchenko (5940056)
Vera Odintsova (4519951)
Natalya Klimenko (5940059)
Robert Loshkarev (5940062)
Maria Pashkova (5940065)
Anna Elizarova (5940068)
Viktoriya Voroshilova (5940071)
Sergei Slavskii (5940074)
Yury Pekov (5940077)
Ekaterina Filippova (5940080)
Tatiana Shashkova (2145550)
Evgenii Levin (5940083)
Dmitry Alexeev (1535380)

November 2018

Figure S2. Manually curated vitamin biosynthesis pathways used in the analysis. (PDF 1598 kb

Additional file 1: Table S1. of Genetical genomics of quality related traits in potato tubers using proteomics

Animesh Acharjee (3524051)
Pierre-Yves Chibon (4792626)
Bjorn Kloosterman (3524054)
Twan America (4792623)
Jenny Renaut (90666)
Chris Maliepaard (191236)
Richard Visser (3431771)

January 2018

List of carbohydrate and starch metabolism and cold sweetening related quality traits measured in th...

Additional file 2: Figure S1. of Capturing the diversity of the human gut microbiota through culture-enriched molecular profiling

Jennifer Lau (784600)
Fiona Whelan (689631)
Isiri Herath (3550367)
Christine Lee (587571)
Stephen Collins (2243821)
Premysl Bercik (3545897)
Michael Surette (3476609)

July 2016

Comparison of the effect of OTU picking method on the proportion of OTUs cultured. Figure S2 Compari...

Additional file 1: of Aptamer-based search for correlates of plasma and serum water T2: implications for early metabolic dysregulation and metabolic syndrome

Vipulkumar Patel (4705879)
Alok Dwivedi (639299)
Sneha Deodhar (4705870)
Ina Mishra (4705864)
David Cistola (4705882)

September 2018

Table S1. Spearman correlation of plasma water T2 with SOMAscan biomarkers. Table S2. Spearman corre...

Additional file 1: of Thermal processing of food reduces gut microbiota diversity of the host and triggers adaptation of the microbiota: evidence from two vertebrates

Zhimin Zhang (408803)
Dapeng Li (110598)

May 2018

This file contains all the supporting information that is associated with the manuscript, including ...

Additional file 1: of Interactive web-based lifestyle intervention and metabolic syndrome: findings from the Red Ruby (a randomized controlled trial)

Leila Jahangiry (3577940)
Davoud Shojaeizadeh (2742352)
Mahdieh Abbasalizad Farhangi (3577934)
Mehdi Yaseri (3577931)
Kazem Mohammad (48564)
Mahdi Najafi (3577937)
Ali Montazeri (1808071)

September 2015

Flow diagram of study. Flow diagram of the study based on the CONSORT statement. (DOC 35 kb

Additional file 1: of Gut microbial beta-glucuronidase and glycerol/diol dehydratase activity contribute to dietary heterocyclic amine biotransformation

Jianbo Zhang (115714)
Christophe Lacroix (35954)
Esther Wortmann (6709124)
Hans-Joachim Ruscheweyh (3165219)
Shinichi Sunagawa (125995)
Shana Sturla (5503748)
Clarissa Schwab (192593)

May 2019

Table S1. Substrate utilization and metabolite production of single strains in the presence of gluco...

Additional file 2: of Biomarkers of tuber intake

Xiaomin Zhou (310952)
Qian Gao (146991)
Giulia PraticĂ˛ (5482439)
Jie Chen (5892)
Lars Dragsted (3430244)

April 2019

Table S2. List of studies reporting non-specific biomarker for tubers intake. (DOCX 16 kb

Additional file 3: of Biomarkers of tuber intake

Xiaomin Zhou (310952)
Qian Gao (146991)
Giulia PraticĂ˛ (5482439)
Jie Chen (5892)
Lars Dragsted (3430244)

April 2019

Table S1. Components reported in potatoes and heated potato products. (DOCX 19 kb

Additional file 1: of Biomarkers of food intake for Allium vegetables

Giulia PraticĂ˛ (5482439)
Qian Gao (146991)
Claudine Manach (548951)
Lars Dragsted (3430244)

December 2018

Table S1. Chemical description of the candidate BFIs for Allium vegetables. Text S1 Validation crite...

Additional file 1: of Biomarkers of food intake for nuts and vegetable oils: an extensive literature search

Mar Garcia-Aloy (1784680)
Paul Hulshof (6486413)
Sheila Estruel-Amades (5471483)
Maryse OstĂŠ (6486422)
Maria Lankinen (208497)
Johanna Geleijnse (6188018)
Janette Goede (6486419)
Marynka Ulaszewska (3661876)
Fulvio Mattivi (161798)
Stephan Bakker (847658)
Ursula Schwab (93806)
Cristina Andres-Lacueva (1645708)

March 2019

Table S1. Nonrelevant food intake biomarkers for nuts. Table S2. Nonrelevant food intake biomarkers ...

Additional file 1: of Biomarker of food intake for assessing the consumption of dairy and egg products

Linda Münger (5803571)
Mar Garcia-Aloy (1784680)
Rosa Vázquez-Fresno (5803574)
Doreen Gille (805374)
Albert Rosana (5803577)
Anna Passerini (5803580)
María-Trinidad Soria-Florido (5803583)
Grégory Pimentel (4898785)
Tanvir Sajed (3864190)
David Wishart (13381)
Cristina Andres Lacueva (5803586)
Guy Vergères (805380)
Giulia Praticò (536570)

September 2018

Tables S1-S10. Describing the literature search criteria and the lists of studies and putative bioma...

Additional file 3: of A reverse metabolic approach to weaning: in silico identification of immune-beneficial infant gut bacteria, mining their metabolism for prebiotic feeds and sourcing these feeds in the natural product space

Samanta Michelini (5779523)
Biju Balakrishnan (5779526)
Silvia Parolo (150504)
Alice Matone (451692)
Jane Mullaney (4861261)
Wayne Young (485114)
Olivier Gasser (178779)
Clare Wall (4901581)
Corrado Priami (112396)
Rosario Lombardo (5156192)
Martin Kussmann (122292)

September 2018

Table S1. Example of relevant sentences from the pipeline for selected microbes. Supplemental Inform...

Additional file 2: of Gut microbiota of preterm infants supplemented with probiotics: sub-study of the ProPrems trial

Erica Plummer (5961608)
Dieter Bulach (368712)
Gerald Murray (4876939)
Susan Jacobs (5961611)
Sepehr Tabrizi (3638359)
Suzanne Garland (398522)

November 2018

Heatmap of bacterial abundance in all study specimens. Each vertical line represents the bacterial c...

Additional file 1: of Biomarkers of legume intake in human intervention and observational studies: a systematic review

Pedapati Sri Harsha (5735108)
Roshaida Wahab (5735111)
Mar Garcia-Aloy (1784680)
Francisco Madrid-Gambin (3839722)
Sheila Estruel-Amades (5471483)
Bernhard Watzl (422812)
Cristina AndrĂŠs-Lacueva (5735120)
Lorraine Brennan (449247)

September 2018

Table S1. Keywords related to the name and synonyms of the each potential biomarker of soy/pulses in...

Additional file 2: of Knomics-Biota - a system for exploratory analysis of human gut microbiota data

Daria Efimova (5940050)
Alexander Tyakht (2131003)
Anna Popenko (2131006)
Anatoly Vasilyev (5940053)
Ilya Altukhov (3455018)
Nikita Dovidchenko (5940056)
Vera Odintsova (4519951)
Natalya Klimenko (5940059)
Robert Loshkarev (5940062)
Maria Pashkova (5940065)
Anna Elizarova (5940068)
Viktoriya Voroshilova (5940071)
Sergei Slavskii (5940074)
Yury Pekov (5940077)
Ekaterina Filippova (5940080)
Tatiana Shashkova (2145550)
Evgenii Levin (5940083)
Dmitry Alexeev (1535380)

November 2018

Figure S2. Manually curated vitamin biosynthesis pathways used in the analysis. (PDF 1598 kb

Additional file 1: Table S1. of Genetical genomics of quality related traits in potato tubers using proteomics

Animesh Acharjee (3524051)
Pierre-Yves Chibon (4792626)
Bjorn Kloosterman (3524054)
Twan America (4792623)
Jenny Renaut (90666)
Chris Maliepaard (191236)
Richard Visser (3431771)

January 2018

List of carbohydrate and starch metabolism and cold sweetening related quality traits measured in th...

Additional file 2: Figure S1. of Capturing the diversity of the human gut microbiota through culture-enriched molecular profiling

Jennifer Lau (784600)
Fiona Whelan (689631)
Isiri Herath (3550367)
Christine Lee (587571)
Stephen Collins (2243821)
Premysl Bercik (3545897)
Michael Surette (3476609)

July 2016

Comparison of the effect of OTU picking method on the proportion of OTUs cultured. Figure S2 Compari...

Additional file 1: of Aptamer-based search for correlates of plasma and serum water T2: implications for early metabolic dysregulation and metabolic syndrome

Vipulkumar Patel (4705879)
Alok Dwivedi (639299)
Sneha Deodhar (4705870)
Ina Mishra (4705864)
David Cistola (4705882)

September 2018

Table S1. Spearman correlation of plasma water T2 with SOMAscan biomarkers. Table S2. Spearman corre...

Additional file 1: of Thermal processing of food reduces gut microbiota diversity of the host and triggers adaptation of the microbiota: evidence from two vertebrates

Zhimin Zhang (408803)
Dapeng Li (110598)

May 2018

This file contains all the supporting information that is associated with the manuscript, including ...

Additional file 1: of Interactive web-based lifestyle intervention and metabolic syndrome: findings from the Red Ruby (a randomized controlled trial)

Leila Jahangiry (3577940)
Davoud Shojaeizadeh (2742352)
Mahdieh Abbasalizad Farhangi (3577934)
Mehdi Yaseri (3577931)
Kazem Mohammad (48564)
Mahdi Najafi (3577937)
Ali Montazeri (1808071)

September 2015

Flow diagram of study. Flow diagram of the study based on the CONSORT statement. (DOC 35 kb

Additional file 1: of Gut microbial beta-glucuronidase and glycerol/diol dehydratase activity contribute to dietary heterocyclic amine biotransformation

Jianbo Zhang (115714)
Christophe Lacroix (35954)
Esther Wortmann (6709124)
Hans-Joachim Ruscheweyh (3165219)
Shinichi Sunagawa (125995)
Shana Sturla (5503748)
Clarissa Schwab (192593)

May 2019

Table S1. Substrate utilization and metabolite production of single strains in the presence of gluco...

Additional file 1: of Biomarkers of tuber intake

Abstract

Extracted data

Additional file 1: of Biomarkers of tuber intake

Abstract

Extracted data

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