Additional file 6: of De novo transcriptome and phytochemical analyses reveal differentially expressed genes and characteristic secondary metabolites in the original oolong tea (Camellia sinensis) cultivar ‘Tieguanyin’ compared with cultivar ‘Benshan’

Yuqiong Guo (4605481)
Chen Zhu (445894)
Shanshan Zhao (1333206)
Shuting Zhang (436486)
Wenjian Wang (314196)
Haifeng Fu (3808564)
Xiaozhen Li (296778)
Chengzhe Zhou (6553889)
Lan Chen (16760)
Yuling Lin (401495)
Zhongxiong Lai (401496)

Open link

Publication date

April 2019

DOI

10.6084/m9.figshare.7950887.v1

Abstract

Figure S3. Cluster of orthologous groups (COG) analysis of all unigenes. (TIF 1749 kb

Extracted data

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Additional file 6: of De novo transcriptome and phytochemical analyses reveal differentially expressed genes and characteristic secondary metabolites in the original oolong tea (Camellia sinensis) cultivar ‘Tieguanyin’ compared with cultivar ‘Benshan’

Yuqiong Guo (4605481)
Chen Zhu (445894)
Shanshan Zhao (1333206)
Shuting Zhang (436486)
Wenjian Wang (314196)
Haifeng Fu (3808564)
Xiaozhen Li (296778)
Chengzhe Zhou (6553889)
Lan Chen (16760)
Yuling Lin (401495)
Zhongxiong Lai (401496)

Open link

Publication date

April 2019

DOI

10.6084/m9.figshare.7950887.v1

Abstract

Figure S3. Cluster of orthologous groups (COG) analysis of all unigenes. (TIF 1749 kb

Extracted data

Chun-Fang Li (748504)
Yan-Xia Xu (2662063)
Jian-Qiang Ma (544231)
Ji-Qiang Jin (544235)
Dan-Juan Huang (3549335)
Ming-Zhe Yao (544232)
Chun-Lei Ma (544233)
Liang Chen (73736)

September 2016

Gene Ontology enrichment classifications of the differentially expressed genes up-regulated between ...

Additional file 3 of Transcriptome analysis reveals the roles of phytohormone signaling in tea plant (Camellia sinensis L.) flower development

Xiaohan Xu (661043)
Jing Tao (334550)
Anqi Xing (6697586)
Zichen Wu (6697589)
Yuqin Xu (8474352)
Yi Sun (118759)
Jiangyuan Zhu (8358765)
Xiang Dai (46403)
Yuhua Wang (289796)

October 2022

Additional file 3: Fig. S3: Gene expression analysis of the three C. sinensis varieties during flowe...

Additional file 2 of Transcriptome analysis reveals the roles of phytohormone signaling in tea plant (Camellia sinensis L.) flower development

Xiaohan Xu (661043)
Jing Tao (334550)
Anqi Xing (6697586)
Zichen Wu (6697589)
Yuqin Xu (8474352)
Yi Sun (118759)
Jiangyuan Zhu (8358765)
Xiang Dai (46403)
Yuhua Wang (289796)

October 2022

Additional file 2: Fig. S2: Morphological characteristics of flower organs at three flower developme...

Additional file 8: of De novo transcriptome and phytochemical analyses reveal differentially expressed genes and characteristic secondary metabolites in the original oolong tea (Camellia sinensis) cultivar ‘Tieguanyin’ compared with cultivar ‘Benshan’

Yuqiong Guo (4605481)
Chen Zhu (445894)
Shanshan Zhao (1333206)
Shuting Zhang (436486)
Wenjian Wang (314196)
Haifeng Fu (3808564)
Xiaozhen Li (296778)
Chengzhe Zhou (6553889)
Lan Chen (16760)
Yuling Lin (401495)
Zhongxiong Lai (401496)

April 2019

Figure S5. Hierarchical clustering analysis of relative expression levels of differentially expresse...

Additional file 3: of De novo transcriptome and phytochemical analyses reveal differentially expressed genes and characteristic secondary metabolites in the original oolong tea (Camellia sinensis) cultivar ‘Tieguanyin’ compared with cultivar ‘Benshan’

Yuqiong Guo (4605481)
Chen Zhu (445894)
Shanshan Zhao (1333206)
Shuting Zhang (436486)
Wenjian Wang (314196)
Haifeng Fu (3808564)
Xiaozhen Li (296778)
Chengzhe Zhou (6553889)
Lan Chen (16760)
Yuling Lin (401495)
Zhongxiong Lai (401496)

April 2019

Table S2. Main biological characteristics of TGY (Wei), TGY (Wang), and BS. (DOC 37 kb

Additional file 7: of De novo transcriptome and phytochemical analyses reveal differentially expressed genes and characteristic secondary metabolites in the original oolong tea (Camellia sinensis) cultivar ‘Tieguanyin’ compared with cultivar ‘Benshan’

Yuqiong Guo (4605481)
Chen Zhu (445894)
Shanshan Zhao (1333206)
Shuting Zhang (436486)
Wenjian Wang (314196)
Haifeng Fu (3808564)
Xiaozhen Li (296778)
Chengzhe Zhou (6553889)
Lan Chen (16760)
Yuling Lin (401495)
Zhongxiong Lai (401496)

April 2019

Figure S4. Number of transcription factors (TFs) identified in TGY (Wei), TGY (Wang), and BS. (TIF 1...

Additional file 9: of De novo transcriptome and phytochemical analyses reveal differentially expressed genes and characteristic secondary metabolites in the original oolong tea (Camellia sinensis) cultivar ‘Tieguanyin’ compared with cultivar ‘Benshan’

Yuqiong Guo (4605481)
Chen Zhu (445894)
Shanshan Zhao (1333206)
Shuting Zhang (436486)
Wenjian Wang (314196)
Haifeng Fu (3808564)
Xiaozhen Li (296778)
Chengzhe Zhou (6553889)
Lan Chen (16760)
Yuling Lin (401495)
Zhongxiong Lai (401496)

April 2019

Table S4. Differentially expressed genes (DEGs) related to limonene metabolic pathways in TGY (Wei),...

Additional file 1: of De novo transcriptome and phytochemical analyses reveal differentially expressed genes and characteristic secondary metabolites in the original oolong tea (Camellia sinensis) cultivar ‘Tieguanyin’ compared with cultivar ‘Benshan’

Yuqiong Guo (4605481)
Chen Zhu (445894)
Shanshan Zhao (1333206)
Shuting Zhang (436486)
Wenjian Wang (314196)
Haifeng Fu (3808564)
Xiaozhen Li (296778)
Chengzhe Zhou (6553889)
Lan Chen (16760)
Yuling Lin (401495)
Zhongxiong Lai (401496)

April 2019

Figure S1. Phenotype of original tea plants. (A): “Wei shuo” ‘Tieguanyin’ (Camellia sinensis cv. ‘Ti...

Additional file 2: of Transcriptomic and phytochemical analysis of the biosynthesis of characteristic constituents in tea (Camellia sinensis) compared with oil tea (Camellia oleifera)

Yuling Tai (3410630)
Chaoling Wei (408278)
Hua Yang (120668)
Liang Zhang (41392)
Qi Chen (144168)
Weiwei Deng (2550691)
Shu Wei (845364)
Jing Zhang (23775)
Congbing Fang (3410627)
Chitang Ho (3410633)
Xiaochun Wan (408279)

August 2015

Statistical comparison of DEGs between any two tissues. The genes were classified into three classes...

Additional file 5: of Transcriptomic and phytochemical analysis of the biosynthesis of characteristic constituents in tea (Camellia sinensis) compared with oil tea (Camellia oleifera)

Yuling Tai (3410630)
Chaoling Wei (408278)
Hua Yang (120668)
Liang Zhang (41392)
Qi Chen (144168)
Weiwei Deng (2550691)
Shu Wei (845364)
Jing Zhang (23775)
Congbing Fang (3410627)
Chitang Ho (3410633)
Xiaochun Wan (408279)

August 2015

List of DEGs analyzed by qRT-PCR. A total of 34 genes involved in the flavonoid, theanine and caffei...

De novo transcriptome and phytochemical analyses reveal differentially expressed genes and characteristic secondary metabolites in the original oolong tea (Camellia sinensis) cultivar ‘Tieguanyin’ compared with cultivar ‘Benshan’

Yuqiong Guo
Chen Zhu
Shanshan Zhao
Shuting Zhang
Wenjian Wang
Haifeng Fu
Xiaozhen Li
Chengzhe Zhou
Lan Chen
Yuling Lin
Zhongxiong Lai

April 2019

Abstract Background The two original plants of the oolong tea cultivar (‘Tieguanyin’) are “Wei shuo”...

Additional file 3: of Transcriptomic and phytochemical analysis of the biosynthesis of characteristic constituents in tea (Camellia sinensis) compared with oil tea (Camellia oleifera)

Yuling Tai (3410630)
Chaoling Wei (408278)
Hua Yang (120668)
Liang Zhang (41392)
Qi Chen (144168)
Weiwei Deng (2550691)
Shu Wei (845364)
Jing Zhang (23775)
Congbing Fang (3410627)
Chitang Ho (3410633)
Xiaochun Wan (408279)

August 2015

The rich factors and number of genes involved in each pathway derived from a comparison of gene expr...

Additional file 5: of Gene co-expression network analysis reveals coordinated regulation of three characteristic secondary biosynthetic pathways in tea plant (Camellia sinensis)

Yuling Tai (3410630)
Chun Liu (47227)
Shuwei Yu (5636075)
Hua Yang (120668)
Jiameng Sun (5636078)
Chunxiao Guo (5518769)
Bei Huang (485021)
Zhaoye Liu (5636081)
Yi Yuan (180239)
Enhua Xia (5636084)
Chaoling Wei (408278)
Xiaochun Wan (408279)

August 2018

Unigene IDs and primer sequences for selected transcripts used for qPCR validation. (XLSX 9 kb

Additional file 2: of Gene co-expression network analysis reveals coordinated regulation of three characteristic secondary biosynthetic pathways in tea plant (Camellia sinensis)

Yuling Tai (3410630)
Chun Liu (47227)
Shuwei Yu (5636075)
Hua Yang (120668)
Jiameng Sun (5636078)
Chunxiao Guo (5518769)
Bei Huang (485021)
Zhaoye Liu (5636081)
Yi Yuan (180239)
Enhua Xia (5636084)
Chaoling Wei (408278)
Xiaochun Wan (408279)

August 2018

Modules significantly (pâ<â0.05) correlated with characteristic components in tea. (XLSX 11 kb

Additional file 3: of Transcriptomic analysis between self- and cross-pollinated pistils of tea plants (Camellia sinensis)

Qingping Ma (5143934)
Changsong Chen (3110418)
Zhongping Zeng (5143931)
Zhongwei Zou (107483)
Huan Li (120482)
Qiongqiong Zhou (92521)
Xuan Chen (158617)
Kang Sun (630771)
Xinghui Li (434545)

April 2018

Figure S3. Gene Ontology enrich analysis of DEGs between unpollinated and pollinated samples. (TIF 7...

Additional file 1: of Biochemical and transcriptomic analyses reveal different metabolite biosynthesis profiles among three color and developmental stages in âAnji Baichaâ (Camellia sinensis)

Chun-Fang Li (748504)
Yan-Xia Xu (2662063)
Jian-Qiang Ma (544231)
Ji-Qiang Jin (544235)
Dan-Juan Huang (3549335)
Ming-Zhe Yao (544232)
Chun-Lei Ma (544233)
Liang Chen (73736)

September 2016

Gene Ontology enrichment classifications of the differentially expressed genes up-regulated between ...

Additional file 3 of Transcriptome analysis reveals the roles of phytohormone signaling in tea plant (Camellia sinensis L.) flower development

Xiaohan Xu (661043)
Jing Tao (334550)
Anqi Xing (6697586)
Zichen Wu (6697589)
Yuqin Xu (8474352)
Yi Sun (118759)
Jiangyuan Zhu (8358765)
Xiang Dai (46403)
Yuhua Wang (289796)

October 2022

Additional file 3: Fig. S3: Gene expression analysis of the three C. sinensis varieties during flowe...

Additional file 2 of Transcriptome analysis reveals the roles of phytohormone signaling in tea plant (Camellia sinensis L.) flower development

Xiaohan Xu (661043)
Jing Tao (334550)
Anqi Xing (6697586)
Zichen Wu (6697589)
Yuqin Xu (8474352)
Yi Sun (118759)
Jiangyuan Zhu (8358765)
Xiang Dai (46403)
Yuhua Wang (289796)

October 2022

Additional file 2: Fig. S2: Morphological characteristics of flower organs at three flower developme...

Yuqiong Guo (4605481)
Chen Zhu (445894)
Shanshan Zhao (1333206)
Shuting Zhang (436486)
Wenjian Wang (314196)
Haifeng Fu (3808564)
Xiaozhen Li (296778)
Chengzhe Zhou (6553889)
Lan Chen (16760)
Yuling Lin (401495)
Zhongxiong Lai (401496)

April 2019

Figure S5. Hierarchical clustering analysis of relative expression levels of differentially expresse...

Yuqiong Guo (4605481)
Chen Zhu (445894)
Shanshan Zhao (1333206)
Shuting Zhang (436486)
Wenjian Wang (314196)
Haifeng Fu (3808564)
Xiaozhen Li (296778)
Chengzhe Zhou (6553889)
Lan Chen (16760)
Yuling Lin (401495)
Zhongxiong Lai (401496)

April 2019

Table S2. Main biological characteristics of TGY (Wei), TGY (Wang), and BS. (DOC 37 kb

Yuqiong Guo (4605481)
Chen Zhu (445894)
Shanshan Zhao (1333206)
Shuting Zhang (436486)
Wenjian Wang (314196)
Haifeng Fu (3808564)
Xiaozhen Li (296778)
Chengzhe Zhou (6553889)
Lan Chen (16760)
Yuling Lin (401495)
Zhongxiong Lai (401496)

April 2019

Figure S4. Number of transcription factors (TFs) identified in TGY (Wei), TGY (Wang), and BS. (TIF 1...

Yuqiong Guo (4605481)
Chen Zhu (445894)
Shanshan Zhao (1333206)
Shuting Zhang (436486)
Wenjian Wang (314196)
Haifeng Fu (3808564)
Xiaozhen Li (296778)
Chengzhe Zhou (6553889)
Lan Chen (16760)
Yuling Lin (401495)
Zhongxiong Lai (401496)

April 2019

Table S4. Differentially expressed genes (DEGs) related to limonene metabolic pathways in TGY (Wei),...

Yuqiong Guo (4605481)
Chen Zhu (445894)
Shanshan Zhao (1333206)
Shuting Zhang (436486)
Wenjian Wang (314196)
Haifeng Fu (3808564)
Xiaozhen Li (296778)
Chengzhe Zhou (6553889)
Lan Chen (16760)
Yuling Lin (401495)
Zhongxiong Lai (401496)

April 2019

Figure S1. Phenotype of original tea plants. (A): “Wei shuo” ‘Tieguanyin’ (Camellia sinensis cv. ‘Ti...

Additional file 2: of Transcriptomic and phytochemical analysis of the biosynthesis of characteristic constituents in tea (Camellia sinensis) compared with oil tea (Camellia oleifera)

Yuling Tai (3410630)
Chaoling Wei (408278)
Hua Yang (120668)
Liang Zhang (41392)
Qi Chen (144168)
Weiwei Deng (2550691)
Shu Wei (845364)
Jing Zhang (23775)
Congbing Fang (3410627)
Chitang Ho (3410633)
Xiaochun Wan (408279)

August 2015

Statistical comparison of DEGs between any two tissues. The genes were classified into three classes...

Additional file 5: of Transcriptomic and phytochemical analysis of the biosynthesis of characteristic constituents in tea (Camellia sinensis) compared with oil tea (Camellia oleifera)

Yuling Tai (3410630)
Chaoling Wei (408278)
Hua Yang (120668)
Liang Zhang (41392)
Qi Chen (144168)
Weiwei Deng (2550691)
Shu Wei (845364)
Jing Zhang (23775)
Congbing Fang (3410627)
Chitang Ho (3410633)
Xiaochun Wan (408279)

August 2015

List of DEGs analyzed by qRT-PCR. A total of 34 genes involved in the flavonoid, theanine and caffei...

Yuqiong Guo
Chen Zhu
Shanshan Zhao
Shuting Zhang
Wenjian Wang
Haifeng Fu
Xiaozhen Li
Chengzhe Zhou
Lan Chen
Yuling Lin
Zhongxiong Lai

April 2019

Abstract Background The two original plants of the oolong tea cultivar (‘Tieguanyin’) are “Wei shuo”...

Additional file 3: of Transcriptomic and phytochemical analysis of the biosynthesis of characteristic constituents in tea (Camellia sinensis) compared with oil tea (Camellia oleifera)

Yuling Tai (3410630)
Chaoling Wei (408278)
Hua Yang (120668)
Liang Zhang (41392)
Qi Chen (144168)
Weiwei Deng (2550691)
Shu Wei (845364)
Jing Zhang (23775)
Congbing Fang (3410627)
Chitang Ho (3410633)
Xiaochun Wan (408279)

August 2015

The rich factors and number of genes involved in each pathway derived from a comparison of gene expr...

Additional file 5: of Gene co-expression network analysis reveals coordinated regulation of three characteristic secondary biosynthetic pathways in tea plant (Camellia sinensis)

Yuling Tai (3410630)
Chun Liu (47227)
Shuwei Yu (5636075)
Hua Yang (120668)
Jiameng Sun (5636078)
Chunxiao Guo (5518769)
Bei Huang (485021)
Zhaoye Liu (5636081)
Yi Yuan (180239)
Enhua Xia (5636084)
Chaoling Wei (408278)
Xiaochun Wan (408279)

August 2018

Unigene IDs and primer sequences for selected transcripts used for qPCR validation. (XLSX 9 kb

Additional file 2: of Gene co-expression network analysis reveals coordinated regulation of three characteristic secondary biosynthetic pathways in tea plant (Camellia sinensis)

Yuling Tai (3410630)
Chun Liu (47227)
Shuwei Yu (5636075)
Hua Yang (120668)
Jiameng Sun (5636078)
Chunxiao Guo (5518769)
Bei Huang (485021)
Zhaoye Liu (5636081)
Yi Yuan (180239)
Enhua Xia (5636084)
Chaoling Wei (408278)
Xiaochun Wan (408279)

August 2018

Modules significantly (pâ<â0.05) correlated with characteristic components in tea. (XLSX 11 kb

Additional file 3: of Transcriptomic analysis between self- and cross-pollinated pistils of tea plants (Camellia sinensis)

Qingping Ma (5143934)
Changsong Chen (3110418)
Zhongping Zeng (5143931)
Zhongwei Zou (107483)
Huan Li (120482)
Qiongqiong Zhou (92521)
Xuan Chen (158617)
Kang Sun (630771)
Xinghui Li (434545)

April 2018

Figure S3. Gene Ontology enrich analysis of DEGs between unpollinated and pollinated samples. (TIF 7...

Additional file 1: of Biochemical and transcriptomic analyses reveal different metabolite biosynthesis profiles among three color and developmental stages in âAnji Baichaâ (Camellia sinensis)

Chun-Fang Li (748504)
Yan-Xia Xu (2662063)
Jian-Qiang Ma (544231)
Ji-Qiang Jin (544235)
Dan-Juan Huang (3549335)
Ming-Zhe Yao (544232)
Chun-Lei Ma (544233)
Liang Chen (73736)

September 2016

Gene Ontology enrichment classifications of the differentially expressed genes up-regulated between ...

Additional file 3 of Transcriptome analysis reveals the roles of phytohormone signaling in tea plant (Camellia sinensis L.) flower development

Xiaohan Xu (661043)
Jing Tao (334550)
Anqi Xing (6697586)
Zichen Wu (6697589)
Yuqin Xu (8474352)
Yi Sun (118759)
Jiangyuan Zhu (8358765)
Xiang Dai (46403)
Yuhua Wang (289796)

October 2022

Additional file 3: Fig. S3: Gene expression analysis of the three C. sinensis varieties during flowe...

Additional file 2 of Transcriptome analysis reveals the roles of phytohormone signaling in tea plant (Camellia sinensis L.) flower development

Xiaohan Xu (661043)
Jing Tao (334550)
Anqi Xing (6697586)
Zichen Wu (6697589)
Yuqin Xu (8474352)
Yi Sun (118759)
Jiangyuan Zhu (8358765)
Xiang Dai (46403)
Yuhua Wang (289796)

October 2022

Additional file 2: Fig. S2: Morphological characteristics of flower organs at three flower developme...

Additional file 6: of De novo transcriptome and phytochemical analyses reveal differentially expressed genes and characteristic secondary metabolites in the original oolong tea (Camellia sinensis) cultivar ‘Tieguanyin’ compared with cultivar ‘Benshan’

Abstract

Extracted data

Additional file 6: of De novo transcriptome and phytochemical analyses reveal differentially expressed genes and characteristic secondary metabolites in the original oolong tea (Camellia sinensis) cultivar ‘Tieguanyin’ compared with cultivar ‘Benshan’

Abstract

Extracted data

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