McFadden_suppl_MLtree_170taxa_concatenatedgenes

Phylogenetic tree inferred from nucleotide sequences of 13 PCGs of 34 organisms using maximum likelihood (ML) method in RaxmlGUI v1.3 (1000 bootstrap replicates).

Deepika Singh (1479097)
Debajyoti Kabiraj (4594900)
Pragya Sharma (4594897)
Hasnahana Chetia (4594903)
Ponnala Vimal Mosahari (4594894)
Kartik Neog (117518)
Utpal Bora (2589871)

November 2017

The tree is drawn to scale with bootstrap values indicated along with the branches.</p

ML tree inferred based on concatenation of 62 genes from 11 species using the GTR Γ model

Xin-Hui Zou (48579)
Fu-Min Zhang (48580)
Jian-Guo Zhang (48581)
Li-Li Zang (48582)
Liang Tang (48583)
Jun Wang (5906)
Tao Sang (48584)
Song Ge (48585)

December 2011

Numbers above branches indicate bootstrap support of ML and MP, and posterior probability of BI anal...

Maximum likelihood (ML) phylogenetic tree of RIG-I gene used for codon-based ML analysis.

Ana Lemos de Matos (469331)
Grant McFadden (50513)
Pedro J. Esteves (208180)

November 2013

The GTR+G nucleotide substitution model was employed in mammalian RIG-I gene phylogenetic reconst...

McFadden_suppl_MLtree_170taxa_concatenatedgenes

McFadden, Catherine
Gonzalez, Asaul
Imada, Rei
Shi, Sara
Hong, Prudence
Ekins, Merrick
Benayahu, Yehuda

April 2019

Maximum likelihood tree for 170 taxa constructed using concatenated mtMutS + igr1 + COI + 28S rDNA b...

McFadden_suppl_170taxa_concatenated_alignment

Catherine McFadden (5032139)
Asaul Gonzalez (6594545)
Rei Imada (6594548)
Sara Shi (6594560)
Prudence Hong (6594554)
Merrick Ekins (523424)
Yehuda Benayahu (548182)

April 2019

Alignment of concatenated mtMutS + igr1 + COI + 28S rDNA barcodes for 170 taxa used to construct max...

McFadden_suppl_NJtree_164taxa_concatenatedgenes

Catherine McFadden (5032139)
Asaul Gonzalez (6594545)
Rei Imada (6594548)
Sara Shi (6594560)
Prudence Hong (6594554)
Merrick Ekins (523424)
Yehuda Benayahu (548182)

April 2019

Neighbor-joining tree (Kimura 2-parameter) for 164 taxa constructed using concatenated mtMutS + igr1...

McFadden_suppl_164taxa_concatenated_alignment

McFadden, Catherine
Gonzalez, Asaul
Imada, Rei
Shi, Sara
Hong, Prudence
Ekins, Merrick
Benayahu, Yehuda

April 2019

Alignment of concatenated mtMutS + igr1 + COI + 28S rDNA barcodes for 164 taxa used to construct nei...

Concatenated Maximum Likelihood tree.

Jenna Morgan Lang (101683)
Aaron E. Darling (51840)
Jonathan A. Eisen (93505)

April 2013

Phylogenetic tree inferred from a concatenated, partitioned alignment of 24 genes using RAxML. Th...

Maximum likelihood tree resulting from the 58 concatenated protein-coding genes common to 14 representative taxa.

Hye Woo Shin (5485250)
Nam Sook Lee (5010803)

July 2018

The BI tree had identical topology with the ML tree. The GTR+I+G model was selected based on Mode...

Phylogenomic analysis showing the relatedness of the genomes in terms of sequence divergence of the panorthologs.

Charlotte Peeters (503774)
Vaughn S. Cooper (251054)
Philip J. Hatcher (251065)
Bart Verheyde (3944726)
Aurélien Carlier (3944729)
Peter Vandamme (23046)

April 2017

The maximum likelihood tree was inferred using the GTRGAMMA substitution model and is based on a ...

Concatenated DNA + morphology tree, maximum likelihood

Ryan A. Folk (3266664)
John V. Freudenstein (3252297)

November 2016

This tree corresponds to the maximum likelihood tree of Figure 1. The tree was inferred in RAxML usi...

Maximum-likelihood tree estimated from the combined datatset of 65 taxa of Fulgoroidea.

Nan Song (118617)
Ai-Ping Liang (121748)

March 2013

Values above branches denote ML bootstrap support (≥70). The red numbers in circles correspond to...

Individual and concatenated maximum likelihood trees.

Gabriela Delgado (439856)
Valeria Souza (273805)
Rosario Morales (457806)
René Cerritos (457807)
Andrea González-González (457808)
José Luis Méndez (457809)
Virginia Vázquez (457810)
Alejandro Cravioto (192326)

September 2013

All of the trees were constructed in Mega 5.01 for a) adk, b) recA, c) gyrB,...

Maximum likelihood phylogeny of 309 species

Feng, Yan-Jie
Blackburn, David C.
Liang, Dan
Hillis, David M.
Wake, David B.
Cannatella, David C.
Zhang, Peng

July 2017

Maximum likelihood phylogeny generated using partitioned analysis in RAxML for 309 species, includin...

16S rRNA maximum-likelihood tree.

Carole Decker (171640)
Karine Olu (171645)
Sophie Arnaud-Haond (171652)
Sébastien Duperron (431477)

July 2013

The evolutionary model tested was GTR+I+G (proportion of invariable sites = 0.66, number of subst...

Phylogenetic tree inferred from nucleotide sequences of 13 PCGs of 34 organisms using maximum likelihood (ML) method in RaxmlGUI v1.3 (1000 bootstrap replicates).

Deepika Singh (1479097)
Debajyoti Kabiraj (4594900)
Pragya Sharma (4594897)
Hasnahana Chetia (4594903)
Ponnala Vimal Mosahari (4594894)
Kartik Neog (117518)
Utpal Bora (2589871)

November 2017

The tree is drawn to scale with bootstrap values indicated along with the branches.</p

ML tree inferred based on concatenation of 62 genes from 11 species using the GTR Γ model

Xin-Hui Zou (48579)
Fu-Min Zhang (48580)
Jian-Guo Zhang (48581)
Li-Li Zang (48582)
Liang Tang (48583)
Jun Wang (5906)
Tao Sang (48584)
Song Ge (48585)

December 2011

Numbers above branches indicate bootstrap support of ML and MP, and posterior probability of BI anal...

Maximum likelihood (ML) phylogenetic tree of RIG-I gene used for codon-based ML analysis.

Ana Lemos de Matos (469331)
Grant McFadden (50513)
Pedro J. Esteves (208180)

November 2013

The GTR+G nucleotide substitution model was employed in mammalian RIG-I gene phylogenetic reconst...

McFadden_suppl_MLtree_170taxa_concatenatedgenes

McFadden, Catherine
Gonzalez, Asaul
Imada, Rei
Shi, Sara
Hong, Prudence
Ekins, Merrick
Benayahu, Yehuda

April 2019

Maximum likelihood tree for 170 taxa constructed using concatenated mtMutS + igr1 + COI + 28S rDNA b...

McFadden_suppl_170taxa_concatenated_alignment

Catherine McFadden (5032139)
Asaul Gonzalez (6594545)
Rei Imada (6594548)
Sara Shi (6594560)
Prudence Hong (6594554)
Merrick Ekins (523424)
Yehuda Benayahu (548182)

April 2019

Alignment of concatenated mtMutS + igr1 + COI + 28S rDNA barcodes for 170 taxa used to construct max...

McFadden_suppl_NJtree_164taxa_concatenatedgenes

Catherine McFadden (5032139)
Asaul Gonzalez (6594545)
Rei Imada (6594548)
Sara Shi (6594560)
Prudence Hong (6594554)
Merrick Ekins (523424)
Yehuda Benayahu (548182)

April 2019

Neighbor-joining tree (Kimura 2-parameter) for 164 taxa constructed using concatenated mtMutS + igr1...

McFadden_suppl_164taxa_concatenated_alignment

McFadden, Catherine
Gonzalez, Asaul
Imada, Rei
Shi, Sara
Hong, Prudence
Ekins, Merrick
Benayahu, Yehuda

April 2019

Alignment of concatenated mtMutS + igr1 + COI + 28S rDNA barcodes for 164 taxa used to construct nei...

Concatenated Maximum Likelihood tree.

Jenna Morgan Lang (101683)
Aaron E. Darling (51840)
Jonathan A. Eisen (93505)

April 2013

Phylogenetic tree inferred from a concatenated, partitioned alignment of 24 genes using RAxML. Th...

Maximum likelihood tree resulting from the 58 concatenated protein-coding genes common to 14 representative taxa.

Hye Woo Shin (5485250)
Nam Sook Lee (5010803)

July 2018

The BI tree had identical topology with the ML tree. The GTR+I+G model was selected based on Mode...

Phylogenomic analysis showing the relatedness of the genomes in terms of sequence divergence of the panorthologs.

Charlotte Peeters (503774)
Vaughn S. Cooper (251054)
Philip J. Hatcher (251065)
Bart Verheyde (3944726)
Aurélien Carlier (3944729)
Peter Vandamme (23046)

April 2017

The maximum likelihood tree was inferred using the GTRGAMMA substitution model and is based on a ...

Concatenated DNA + morphology tree, maximum likelihood

Ryan A. Folk (3266664)
John V. Freudenstein (3252297)

November 2016

This tree corresponds to the maximum likelihood tree of Figure 1. The tree was inferred in RAxML usi...

Maximum-likelihood tree estimated from the combined datatset of 65 taxa of Fulgoroidea.

Nan Song (118617)
Ai-Ping Liang (121748)

March 2013

Values above branches denote ML bootstrap support (≥70). The red numbers in circles correspond to...

Individual and concatenated maximum likelihood trees.

Gabriela Delgado (439856)
Valeria Souza (273805)
Rosario Morales (457806)
René Cerritos (457807)
Andrea González-González (457808)
José Luis Méndez (457809)
Virginia Vázquez (457810)
Alejandro Cravioto (192326)

September 2013

All of the trees were constructed in Mega 5.01 for a) adk, b) recA, c) gyrB,...

Maximum likelihood phylogeny of 309 species

Feng, Yan-Jie
Blackburn, David C.
Liang, Dan
Hillis, David M.
Wake, David B.
Cannatella, David C.
Zhang, Peng

July 2017

Maximum likelihood phylogeny generated using partitioned analysis in RAxML for 309 species, includin...

16S rRNA maximum-likelihood tree.

Carole Decker (171640)
Karine Olu (171645)
Sophie Arnaud-Haond (171652)
Sébastien Duperron (431477)

July 2013

The evolutionary model tested was GTR+I+G (proportion of invariable sites = 0.66, number of subst...

Phylogenetic tree inferred from nucleotide sequences of 13 PCGs of 34 organisms using maximum likelihood (ML) method in RaxmlGUI v1.3 (1000 bootstrap replicates).

Deepika Singh (1479097)
Debajyoti Kabiraj (4594900)
Pragya Sharma (4594897)
Hasnahana Chetia (4594903)
Ponnala Vimal Mosahari (4594894)
Kartik Neog (117518)
Utpal Bora (2589871)

November 2017

The tree is drawn to scale with bootstrap values indicated along with the branches.</p

ML tree inferred based on concatenation of 62 genes from 11 species using the GTR Γ model

Xin-Hui Zou (48579)
Fu-Min Zhang (48580)
Jian-Guo Zhang (48581)
Li-Li Zang (48582)
Liang Tang (48583)
Jun Wang (5906)
Tao Sang (48584)
Song Ge (48585)

December 2011

Numbers above branches indicate bootstrap support of ML and MP, and posterior probability of BI anal...

Maximum likelihood (ML) phylogenetic tree of RIG-I gene used for codon-based ML analysis.

Ana Lemos de Matos (469331)
Grant McFadden (50513)
Pedro J. Esteves (208180)

November 2013

The GTR+G nucleotide substitution model was employed in mammalian RIG-I gene phylogenetic reconst...

McFadden_suppl_MLtree_170taxa_concatenatedgenes

Abstract

Extracted data

McFadden_suppl_MLtree_170taxa_concatenatedgenes

Abstract

Extracted data

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