PMF & Histogram data for CActd/CActd and MA/CActd complexes- md_pull.mdp Gromacs' molecular dynamics parameters for pulling process of complexes, used for generating starting configurations for the umbrella sampling windows. These windows are used to obtain histograms of COM separations which are used to calculate the potential of mean force for each of the complexes by the weighted histogram method (WHAM).- distPull-MACA.xvg Table of distance (nm) vs time (ps) for the pulling process of the MA/CActd complex- distPull-CACA.xvg Table of distance (nm) vs time (ps) for the pulling process of the CActd/CActd complex- histoMACA.xvg Table of histograms (count) vs COM separation (nm) from umbrella sampling of the MA/CActd complex- histoCACA.xvg T...
Molecular dynamics (MD) simulation is a computational chemistry technique used to observe how a mole...
(A) PMF curves of the dissociation process between p53DBD and ASPPs, starting from the crystal-struc...
Free energy calculations of the potential of mean force (PMF) based on the combination of targeted m...
These are MD trajectories to accompany the paper: "Lipid Binding and Force Transduction in MscL: A C...
Simulation data for the Sec61/TRAP complex, the Sec61 complex, and the TRAP complex in a POPC membra...
Atomic force microscopy (AFM) experiments and steered molecular dynamics (SMD) simulations have reve...
An extremely scalable computational strategy is described for calculations of the potential of mean ...
International audienceWe report the calculation of the potential of mean force (PMF) of different ty...
Abstract: The Weighted Histogram Analysis Method (WHAM) is a standard technique used to compute pote...
A series of Molecular Dynamic (MD) simulations have been performed on a simple polymer matrix system...
The accurate calculation of potentials of mean force for ligand–receptor binding is one of the most ...
All simulations were performed and analysed using the GROMACS version 3.2.1 suite of tools (1) using...
Molecular dynamics (MD) is an appropriate method for investigation of peptide-membrane systems and h...
Nonequilibrium pulling simulations have been a useful approach for investigating a variety of physic...
Calculations of the rates of disassociation between small molecules and proteins have numerous appli...
Molecular dynamics (MD) simulation is a computational chemistry technique used to observe how a mole...
(A) PMF curves of the dissociation process between p53DBD and ASPPs, starting from the crystal-struc...
Free energy calculations of the potential of mean force (PMF) based on the combination of targeted m...
These are MD trajectories to accompany the paper: "Lipid Binding and Force Transduction in MscL: A C...
Simulation data for the Sec61/TRAP complex, the Sec61 complex, and the TRAP complex in a POPC membra...
Atomic force microscopy (AFM) experiments and steered molecular dynamics (SMD) simulations have reve...
An extremely scalable computational strategy is described for calculations of the potential of mean ...
International audienceWe report the calculation of the potential of mean force (PMF) of different ty...
Abstract: The Weighted Histogram Analysis Method (WHAM) is a standard technique used to compute pote...
A series of Molecular Dynamic (MD) simulations have been performed on a simple polymer matrix system...
The accurate calculation of potentials of mean force for ligand–receptor binding is one of the most ...
All simulations were performed and analysed using the GROMACS version 3.2.1 suite of tools (1) using...
Molecular dynamics (MD) is an appropriate method for investigation of peptide-membrane systems and h...
Nonequilibrium pulling simulations have been a useful approach for investigating a variety of physic...
Calculations of the rates of disassociation between small molecules and proteins have numerous appli...
Molecular dynamics (MD) simulation is a computational chemistry technique used to observe how a mole...
(A) PMF curves of the dissociation process between p53DBD and ASPPs, starting from the crystal-struc...
Free energy calculations of the potential of mean force (PMF) based on the combination of targeted m...