Sequencing information of unenriched and enriched clinical samples with DENV infection.

A list of reference strains of DENV from the GenBank with their accession numbers, year isolated/detected and the location.

Joseph Humphrey Kofi Bonney (460837)
Takaya Hayashi (257307)
Samuel Dadzie (544006)
Esinam Agbosu (6103361)
Deborah Pratt (4797456)
Stephen Nyarko (6103364)
Franklin Asiedu-Bekoe (3526835)
Eiji Ido (6103367)
Badu Sarkodie (3526838)
Nobuo Ohta (143290)
Shoji Yamaoka (255707)

December 2018

A list of reference strains of DENV from the GenBank with their accession numbers, year isolated/det...

Next generation sequencing in clinical virology: method optimization and it's use for samples with unknown infectious agent

Poláčková, Kateřina

January 2021

The use of the MinION sequencer (Oxford Nanopore) was tested on samples prepared to simulate infecti...

Summary of Illumina Hiseq sequencing data for small RNAs in PK-15 infected FMDV and negative groups.

Ke-Shan Zhang (544163)
Yong-Jie Liu (299668)
Han-Jin Kong (544164)
Wei-Wei Cheng (544165)
You-Jun Shang (544166)
Hong Tian (169626)
Hai-Xue Zheng (544167)
Jian-Hong Guo (544168)
Xian-Tao Liu (544169)

March 2014

Summary of Illumina Hiseq sequencing data for small RNAs in PK-15 infected FMDV and negative grou...

DEN-IM: Dengue virus genotyping from amplicon and shotgun metagenomic sequencing

Lizarazo, Erley
Machado, Miguel P.
Silva, Diogo N.
Tami, Adriana
Ramirez, Mário
Couto, Natacha
Rossen, John
Carriço, João A.
Microbes in Health and Disease (MHD)
Instituto de Microbiologia, Instituto de Medicina Molecular, Faculdade de Medicina, Universidade de Lisboa
University of Lisbon (FMV-UTL)

January 2020

Supplementary Material/Data for "DEN-IM: Dengue virus genotyping from amplicon and shotgun metagenom...

Viruses and bacteria identified in tissue samples by next-generation sequencing.

Ozlen Saglam (727336)
Erik Samayoa (727337)
Sneha Somasekar (727338)
Samia Naccache (727339)
Akiko Iwasaki (397932)
Charles Y Chiu (11232)

April 2015

Viruses and bacteria identified in tissue samples by next-generation sequencing.</p

DENV fluorescent neutralization test results for sera of patients with proven DENV infection.

Andrea Cristine Koishi (115124)
Andréia Akemi Suzukawa (4966261)
Camila Zanluca (663796)
Daria Elena Camacho (4966264)
Guillermo Comach (137219)
Claudia Nunes Duarte dos Santos (115135)

March 2018

DENV fluorescent neutralization test results for sera of patients with proven DENV infection.</p

Viral load quantification of DENV-1-infected patients using real-time PCR.

Tauyne Menegaldo Pinheiro (5309876)
Mânlio Tasso de Oliveira Mota (288721)
Aripuanã Sakurada Aranha Watanabe (5309861)
Joice Matos Biselli-Périco (629977)
Betânia Paiva Drumond (84393)
Milene Rocha Ribeiro (5309858)
Danila Vedovello (3529049)
João Pessoa Araújo Jr. (5309873)
Paulo Filemon Paolucci Pimenta (305741)
Bárbara Aparecida Chaves (5309855)
Mayara Marques Carneiro da Silva (5309870)
Izabella Cristina Andrade Batista (5309852)
Michelle Premazzi Papa (835548)
Lana Monteiro Meuren (5309864)
Carolina Gonçalves de Oliveira Lucas (578467)
Flavio Lemos Matassoli (578466)
Laura Helena Vega Gonzales Gil (3775291)
Adriana Bozzi (638502)
Carlos Eduardo Calzavara-Silva (719535)
Luciana Barros de Arruda (37086)
Danielle da Glória de Souza (5309867)
Mauro Martins Teixeira (419402)
Nikos Vasilakis (372511)
Maurício Lacerda Nogueira (372639)

May 2018

Viral load quantification of DENV-1-infected patients using real-time PCR.</p

Characteristics of studies profiling whole blood of DENV infected patients.

Cornelia A. M. van de Weg (414969)
Henk-Jan van den Ham (249481)
Maarten A. Bijl (619087)
Fatih Anfasa (701617)
Fatiha Zaaraoui-Boutahar (385935)
Beti E. Dewi (701618)
Leonard Nainggolan (155609)
Wilfred F. J. van IJcken (186473)
Albert D. M. E. Osterhaus (138961)
Byron E. E. Martina (162110)
Eric C. M. van Gorp (225896)
Arno C. Andeweg (253554)

March 2015

Characteristics of studies profiling whole blood of DENV infected patients.</p

Demographics and clinical parameters of patients infected with DENV with different serotypes.

Shubham Shrivastava (408570)
Divya Tiraki (4875964)
Arundhati Diwan (4875967)
Sanjay K. Lalwani (4875958)
Meera Modak (4875970)
Akhilesh Chandra Mishra (4875961)
Vidya A. Arankalle (188036)

February 2018

Demographics and clinical parameters of patients infected with DENV with different serotypes.</p

Summary of serotype and genotype distributions of DENV strains obtained from imported cases in Taiwan during 2011–2016.

Cheng-Fen Yang (638465)
Shu-Fen Chang (638470)
Tung-Chien Hsu (5774249)
Chien-Ling Su (638464)
Tzy-Chen Wang (5774252)
Shih-Hung Lin (5774255)
Su-Lin Yang (5774258)
Chien-Chou Lin (2922087)
Pei-Yun Shu (638471)

October 2018

Summary of serotype and genotype distributions of DENV strains obtained from imported cases in Taiwa...

Infection-enhancement activity in serum samples with neutralizing activity to each of the four DENV serotypes.

Meng Ling Moi (181618)
Chang-Kweng Lim (181621)
Kaw Bing Chua (181623)
Tomohiko Takasaki (181625)
Ichiro Kurane (181627)

February 2012

Sixty serum samples exhibiting neutralizing activity to DENV were analyzed for presence of infect...

Clinical and laboratory outcome measures for patients with DENV-1, DENV-2 vs DENV-1 mixed with DENV-2 infection.

Jiaqi Cao (4383262)
Hong Deng (115865)
Lei Ye (104076)
Xuezheng Ma (6425318)
Shuru Chen (1793533)
Xiaohong Sun (193835)
Xuemin Wu (6425321)
Tao Yan (429415)
Liping Zhang (177396)
Lijuan Liu (136685)
Lili Li (42450)
Wuping Li (583614)
Kongxin Hu (6425324)

March 2019

Clinical and laboratory outcome measures for patients with DENV-1, DENV-2 vs DENV-1 mixed with DENV-...

Co-infection of DENV3 and ZIKV identified in one clinical subject by using the DENV, CHIKV and ZIKV baits panel.

Uma Sangumathi Kamaraj (790881)
Jun Hao Tan (152096)
Ong Xin Mei (6635087)
Louise Pan (6635090)
Tanu Chawla (414745)
Anna Uehara (3202635)
Lin-Fa Wang (145863)
Eng Eong Ooi (56879)
Duane J. Gubler (248346)
Hasitha Tissera (419200)
Lee Ching Ng (272309)
Annelies Wilder-Smith (496355)
Paola Florez de Sessions (440157)
Timothy Barkham (362132)
Danielle E. Anderson (333282)
October Michael Sessions (6635093)

April 2019

From the outermost circle the plot reads as the DENV3 and ZIKV viral genomes, corresponding depth of...

Final microbiological (including virological/parasitological) diagnoses for patients, categorised by indication of acute DENV infection on DENV RDT result (NS1 and/or IgM positive; or NS1 and IgM negative).

Michael J. Carter (400712)
Kate R. Emary (695531)
Catherine E. Moore (695532)
Christopher M. Parry (349451)
Soeng Sona (400714)
Hor Putchhat (371188)
Sin Reaksmey (386721)
Ngoun Chanpheaktra (371186)
Nicole Stoesser (220513)
Andrew D. M. Dobson (695533)
Nicholas P. J. Day (35781)
Varun Kumar (400717)
Stuart D. Blacksell (101742)

February 2015

Final microbiological (including virological/parasitological) diagnoses for patients, categorised...

Nucleotide variant information for re-sequencing projects conducted in current study.

Jason W. Sahl (276694)
Christopher J. Allender (189556)
Rebecca E. Colman (254707)
Katy J. Califf (710313)
James M. Schupp (193214)
Bart J. Currie (131288)
Kristopher E. Van Zandt (710314)
H. Carl Gelhaus (710315)
Paul Keim (69765)
Apichai Tuanyok (78029)

March 2015

Nucleotide variant information for re-sequencing projects conducted in current study.</p

A list of reference strains of DENV from the GenBank with their accession numbers, year isolated/detected and the location.

Joseph Humphrey Kofi Bonney (460837)
Takaya Hayashi (257307)
Samuel Dadzie (544006)
Esinam Agbosu (6103361)
Deborah Pratt (4797456)
Stephen Nyarko (6103364)
Franklin Asiedu-Bekoe (3526835)
Eiji Ido (6103367)
Badu Sarkodie (3526838)
Nobuo Ohta (143290)
Shoji Yamaoka (255707)

December 2018

A list of reference strains of DENV from the GenBank with their accession numbers, year isolated/det...

Next generation sequencing in clinical virology: method optimization and it's use for samples with unknown infectious agent

Poláčková, Kateřina

January 2021

The use of the MinION sequencer (Oxford Nanopore) was tested on samples prepared to simulate infecti...

Summary of Illumina Hiseq sequencing data for small RNAs in PK-15 infected FMDV and negative groups.

Ke-Shan Zhang (544163)
Yong-Jie Liu (299668)
Han-Jin Kong (544164)
Wei-Wei Cheng (544165)
You-Jun Shang (544166)
Hong Tian (169626)
Hai-Xue Zheng (544167)
Jian-Hong Guo (544168)
Xian-Tao Liu (544169)

March 2014

Summary of Illumina Hiseq sequencing data for small RNAs in PK-15 infected FMDV and negative grou...

DEN-IM: Dengue virus genotyping from amplicon and shotgun metagenomic sequencing

Lizarazo, Erley
Machado, Miguel P.
Silva, Diogo N.
Tami, Adriana
Ramirez, Mário
Couto, Natacha
Rossen, John
Carriço, João A.
Microbes in Health and Disease (MHD)
Instituto de Microbiologia, Instituto de Medicina Molecular, Faculdade de Medicina, Universidade de Lisboa
University of Lisbon (FMV-UTL)

January 2020

Supplementary Material/Data for "DEN-IM: Dengue virus genotyping from amplicon and shotgun metagenom...

Viruses and bacteria identified in tissue samples by next-generation sequencing.

Ozlen Saglam (727336)
Erik Samayoa (727337)
Sneha Somasekar (727338)
Samia Naccache (727339)
Akiko Iwasaki (397932)
Charles Y Chiu (11232)

April 2015

Viruses and bacteria identified in tissue samples by next-generation sequencing.</p

DENV fluorescent neutralization test results for sera of patients with proven DENV infection.

Andrea Cristine Koishi (115124)
Andréia Akemi Suzukawa (4966261)
Camila Zanluca (663796)
Daria Elena Camacho (4966264)
Guillermo Comach (137219)
Claudia Nunes Duarte dos Santos (115135)

March 2018

DENV fluorescent neutralization test results for sera of patients with proven DENV infection.</p

Viral load quantification of DENV-1-infected patients using real-time PCR.

Tauyne Menegaldo Pinheiro (5309876)
Mânlio Tasso de Oliveira Mota (288721)
Aripuanã Sakurada Aranha Watanabe (5309861)
Joice Matos Biselli-Périco (629977)
Betânia Paiva Drumond (84393)
Milene Rocha Ribeiro (5309858)
Danila Vedovello (3529049)
João Pessoa Araújo Jr. (5309873)
Paulo Filemon Paolucci Pimenta (305741)
Bárbara Aparecida Chaves (5309855)
Mayara Marques Carneiro da Silva (5309870)
Izabella Cristina Andrade Batista (5309852)
Michelle Premazzi Papa (835548)
Lana Monteiro Meuren (5309864)
Carolina Gonçalves de Oliveira Lucas (578467)
Flavio Lemos Matassoli (578466)
Laura Helena Vega Gonzales Gil (3775291)
Adriana Bozzi (638502)
Carlos Eduardo Calzavara-Silva (719535)
Luciana Barros de Arruda (37086)
Danielle da Glória de Souza (5309867)
Mauro Martins Teixeira (419402)
Nikos Vasilakis (372511)
Maurício Lacerda Nogueira (372639)

May 2018

Viral load quantification of DENV-1-infected patients using real-time PCR.</p

Characteristics of studies profiling whole blood of DENV infected patients.

Cornelia A. M. van de Weg (414969)
Henk-Jan van den Ham (249481)
Maarten A. Bijl (619087)
Fatih Anfasa (701617)
Fatiha Zaaraoui-Boutahar (385935)
Beti E. Dewi (701618)
Leonard Nainggolan (155609)
Wilfred F. J. van IJcken (186473)
Albert D. M. E. Osterhaus (138961)
Byron E. E. Martina (162110)
Eric C. M. van Gorp (225896)
Arno C. Andeweg (253554)

March 2015

Characteristics of studies profiling whole blood of DENV infected patients.</p

Demographics and clinical parameters of patients infected with DENV with different serotypes.

Shubham Shrivastava (408570)
Divya Tiraki (4875964)
Arundhati Diwan (4875967)
Sanjay K. Lalwani (4875958)
Meera Modak (4875970)
Akhilesh Chandra Mishra (4875961)
Vidya A. Arankalle (188036)

February 2018

Demographics and clinical parameters of patients infected with DENV with different serotypes.</p

Summary of serotype and genotype distributions of DENV strains obtained from imported cases in Taiwan during 2011–2016.

Cheng-Fen Yang (638465)
Shu-Fen Chang (638470)
Tung-Chien Hsu (5774249)
Chien-Ling Su (638464)
Tzy-Chen Wang (5774252)
Shih-Hung Lin (5774255)
Su-Lin Yang (5774258)
Chien-Chou Lin (2922087)
Pei-Yun Shu (638471)

October 2018

Summary of serotype and genotype distributions of DENV strains obtained from imported cases in Taiwa...

Infection-enhancement activity in serum samples with neutralizing activity to each of the four DENV serotypes.

Meng Ling Moi (181618)
Chang-Kweng Lim (181621)
Kaw Bing Chua (181623)
Tomohiko Takasaki (181625)
Ichiro Kurane (181627)

February 2012

Sixty serum samples exhibiting neutralizing activity to DENV were analyzed for presence of infect...

Clinical and laboratory outcome measures for patients with DENV-1, DENV-2 vs DENV-1 mixed with DENV-2 infection.

Jiaqi Cao (4383262)
Hong Deng (115865)
Lei Ye (104076)
Xuezheng Ma (6425318)
Shuru Chen (1793533)
Xiaohong Sun (193835)
Xuemin Wu (6425321)
Tao Yan (429415)
Liping Zhang (177396)
Lijuan Liu (136685)
Lili Li (42450)
Wuping Li (583614)
Kongxin Hu (6425324)

March 2019

Clinical and laboratory outcome measures for patients with DENV-1, DENV-2 vs DENV-1 mixed with DENV-...

Co-infection of DENV3 and ZIKV identified in one clinical subject by using the DENV, CHIKV and ZIKV baits panel.

Uma Sangumathi Kamaraj (790881)
Jun Hao Tan (152096)
Ong Xin Mei (6635087)
Louise Pan (6635090)
Tanu Chawla (414745)
Anna Uehara (3202635)
Lin-Fa Wang (145863)
Eng Eong Ooi (56879)
Duane J. Gubler (248346)
Hasitha Tissera (419200)
Lee Ching Ng (272309)
Annelies Wilder-Smith (496355)
Paola Florez de Sessions (440157)
Timothy Barkham (362132)
Danielle E. Anderson (333282)
October Michael Sessions (6635093)

April 2019

From the outermost circle the plot reads as the DENV3 and ZIKV viral genomes, corresponding depth of...

Final microbiological (including virological/parasitological) diagnoses for patients, categorised by indication of acute DENV infection on DENV RDT result (NS1 and/or IgM positive; or NS1 and IgM negative).

Michael J. Carter (400712)
Kate R. Emary (695531)
Catherine E. Moore (695532)
Christopher M. Parry (349451)
Soeng Sona (400714)
Hor Putchhat (371188)
Sin Reaksmey (386721)
Ngoun Chanpheaktra (371186)
Nicole Stoesser (220513)
Andrew D. M. Dobson (695533)
Nicholas P. J. Day (35781)
Varun Kumar (400717)
Stuart D. Blacksell (101742)

February 2015

Final microbiological (including virological/parasitological) diagnoses for patients, categorised...

Nucleotide variant information for re-sequencing projects conducted in current study.

Jason W. Sahl (276694)
Christopher J. Allender (189556)
Rebecca E. Colman (254707)
Katy J. Califf (710313)
James M. Schupp (193214)
Bart J. Currie (131288)
Kristopher E. Van Zandt (710314)
H. Carl Gelhaus (710315)
Paul Keim (69765)
Apichai Tuanyok (78029)

March 2015

Nucleotide variant information for re-sequencing projects conducted in current study.</p

A list of reference strains of DENV from the GenBank with their accession numbers, year isolated/detected and the location.

Joseph Humphrey Kofi Bonney (460837)
Takaya Hayashi (257307)
Samuel Dadzie (544006)
Esinam Agbosu (6103361)
Deborah Pratt (4797456)
Stephen Nyarko (6103364)
Franklin Asiedu-Bekoe (3526835)
Eiji Ido (6103367)
Badu Sarkodie (3526838)
Nobuo Ohta (143290)
Shoji Yamaoka (255707)

December 2018

A list of reference strains of DENV from the GenBank with their accession numbers, year isolated/det...

Next generation sequencing in clinical virology: method optimization and it's use for samples with unknown infectious agent

Poláčková, Kateřina

January 2021

The use of the MinION sequencer (Oxford Nanopore) was tested on samples prepared to simulate infecti...

Summary of Illumina Hiseq sequencing data for small RNAs in PK-15 infected FMDV and negative groups.

Ke-Shan Zhang (544163)
Yong-Jie Liu (299668)
Han-Jin Kong (544164)
Wei-Wei Cheng (544165)
You-Jun Shang (544166)
Hong Tian (169626)
Hai-Xue Zheng (544167)
Jian-Hong Guo (544168)
Xian-Tao Liu (544169)

March 2014

Summary of Illumina Hiseq sequencing data for small RNAs in PK-15 infected FMDV and negative grou...

Sequencing information of unenriched and enriched clinical samples with DENV infection.

Abstract

Extracted data

Sequencing information of unenriched and enriched clinical samples with DENV infection.

Abstract

Extracted data

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