Bayesian cluster memberships obtained using BAPS for (A) the mtDNA dataset of Lucanus cervus and (B) the microsatellite genotypes.

Results from the Bayesian Assignment Test (BAT) and the Haploweb (HW) approaches for species delimitation.

Aurélien Miralles (433352)
Miguel Vences (35733)

July 2013

Correspondence with clades is shown on the mtDNA gene tree (BI analysis of concatenated ND1 and 1...

Bayesian maximum clade credibility tree of the mtDNA dataset of Lucanus cervus obtained using BEAST.

Karen Cox (67096)
Niall McKeown (6635603)
Gloria Antonini (6635606)
Deborah Harvey (6635609)
Emanuela Solano (523155)
An Van Breusegem (6635612)
Arno Thomaes (6635615)

April 2019

Bayesian posterior probabilities higher than 0.5 are shown on nodes. Lineage I is indicated in blue ...

Bar plots of the Bayesian clustering analysis performed using Structure software on microsatellite data.

Andrea Kosovac (5184050)
Jes Johannesen (111765)
Oliver Krstić (5184044)
Milana Mitrović (3265527)
Tatjana Cvrković (5184047)
Ivo Toševski (3271545)
Jelena Jović (3271551)

May 2018

(A) 702 Hyalesthes obsoletus individuals from the 50 populations genotyped in this study a...

Bayesian individual clustering and Bayesian population clustering for the microsatellite data set of B. tabaci Q in China.

Dong Chu (171095)
Hui-Peng Pan (5656933)
Xian-Chun Li (489708)
Dong Guo (442625)
Yun-Li Tao (392020)
Bai-Ming Liu (5656936)
You-Jun Zhang (2578120)

November 2013

In both A and B, individuals are grouped by sampling location. Abbreviations shown at the top of ...

Principal Coordinates Analysis (PCoA) of population pairwise FST values for microsatellite genotypes of Lucanus cervus.

Karen Cox (67096)
Niall McKeown (6635603)
Gloria Antonini (6635606)
Deborah Harvey (6635609)
Emanuela Solano (523155)
An Van Breusegem (6635612)
Arno Thomaes (6635615)

April 2019

The dots are coloured according to the clusters defined by BAPS (see Fig 5B and S2 Fig).</p

BAPS_files

Hyseni, Chaz
Garrick, Ryan C.

April 2019

Input files for BAPS analyses, including a file that shows the mtDNA COI+COII locus haplotypes for e...

Bayesian phylogram and haplotype network demonstrating the different mitochondrial DNA clades across the sampled distribution.

Jacobus H. Visser (630783)
Nigel C. Bennett (153769)
Bettine Jansen van Vuuren (102546)

September 2014

<a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0107226#pone-0107226-g002" ...

Bayesian cluster analysis in STRUCTURE.

Desiré L. Dalton (708977)
Birthe Linden (708978)
Kirsten Wimberger (708979)
Lisa Jane Nupen (708980)
Adrian S. W. Tordiffe (708981)
Peter John Taylor (708982)
M. Thabang Madisha (708983)
Antoinette Kotze (305075)

March 2015

(A) The average cluster membership (over 20 runs) for K = 2 of microsatellite genotypes of C</...

Median joining network of mtDNA cty b haplotypes.

Luca Cornetti (510467)
Michele Menegon (510468)
Giovanni Giovine (510469)
Benoit Heulin (510470)
Cristiano Vernesi (79090)

January 2014

Circles represent haplotypes, area is proportional to frequency and colour indicates the subspeci...

Letter Hierarchical and Spatially Explicit Clustering of DNA Sequences with BAPS Software

Lu Cheng
Thomas R. Connor
David M. Aanensen
Jukka Cor

August 2016

Phylogeographical analyses have become commonplace for a myriad of organisms with the advent of chea...

Analyses of molecular variance (AMOVA) of cpDNA and nrDNA data among clusters identified by Bayesian Analysis of Population Structure (BAPS) with cpDNA, nrDNA and concatenated data, as well as with the population clusters established by BAPS in the analysis with prior of 4 and 5 clusters.

Renan Milagres Lage Novaes (491929)
Renata Acácio Ribeiro (491930)
José Pires Lemos-Filho (491931)
Maria Bernadete Lovato (491932)

December 2013

aP-value<0.0001 for all analyses.See methods and results for more details about the...

MtCOI data as visualized in (a) a Bayesian tree (constructed in MrBayes MrBayes v3.04b), (b) haplotype network (constructed in TCS 1.21), and (c) spatial clustering of individuals (constructed in BAPS v5.4).

Terry V. Reynolds (603051)
Conrad A. Matthee (331178)
Sophie von der Heyden (603052)

July 2014

NuITS1 data is visualized in (d) a Bayesian tree and (e) a haplotype network. In b & e, the size ...

Bayesian clustering analysis of 358-bp mtDNA control region sequences from brown hares (L. europaeus) and mountain hares (L. timidus and introgressed haplotypes of this species in other hares) as implemented in BAPS v6. resulting in K = 6.

Mohammad Reza Ashrafzadeh (5819327)
Mihajla Djan (3297177)
László Szendrei (5819330)
Algimantas Paulauskas (5467499)
Massimo Scandura (534340)
Zoltán Bagi (471376)
Daniela Elena Ilie (799227)
Nikoloz Kerdikoshvili (5819333)
Panek Marek (5819336)
Noémi Soós (5819339)
Szilvia Kusza (534338)

October 2018

We detected 5 clusters within major lineages of L. europaeus; 2 and 3 clusters within lineages AME a...

Bayesian inference chronogram from BEAST estimated based on haplotypes from 58 sequences of the concatenated mitochondrial genes (COI and Cytb).

Willam Oliveira Da Silva (4319017)
Julio Cesar Pieczarka (711864)
Malcolm Andrew Ferguson-Smith (689950)
Patricia Caroline Mary O’Brien (689951)
Ana Cristina Mendes-Oliveira (847560)
Iracilda Sampaio (287329)
Jeferson Carneiro (3552767)
Cleusa Yoshiko Nagamachi (711860)

August 2017

The Bayesian posterior probability (BPP) is given at each node (BS/BPP). The symbols refer to spe...

Results from Bayesian clustering analyses of 51 Letharia specimens from [18].

Susanne Altermann (564736)
Steven D. Leavitt (491147)
Trevor Goward (564737)
Matthew P. Nelsen (564738)
H. Thorsten Lumbsch (110741)

May 2014

A. Individual assignments within population clusters in Letharia inferred using the Progra...

Results from the Bayesian Assignment Test (BAT) and the Haploweb (HW) approaches for species delimitation.

Aurélien Miralles (433352)
Miguel Vences (35733)

July 2013

Correspondence with clades is shown on the mtDNA gene tree (BI analysis of concatenated ND1 and 1...

Bayesian maximum clade credibility tree of the mtDNA dataset of Lucanus cervus obtained using BEAST.

Karen Cox (67096)
Niall McKeown (6635603)
Gloria Antonini (6635606)
Deborah Harvey (6635609)
Emanuela Solano (523155)
An Van Breusegem (6635612)
Arno Thomaes (6635615)

April 2019

Bayesian posterior probabilities higher than 0.5 are shown on nodes. Lineage I is indicated in blue ...

Bar plots of the Bayesian clustering analysis performed using Structure software on microsatellite data.

Andrea Kosovac (5184050)
Jes Johannesen (111765)
Oliver Krstić (5184044)
Milana Mitrović (3265527)
Tatjana Cvrković (5184047)
Ivo Toševski (3271545)
Jelena Jović (3271551)

May 2018

(A) 702 Hyalesthes obsoletus individuals from the 50 populations genotyped in this study a...

Bayesian individual clustering and Bayesian population clustering for the microsatellite data set of B. tabaci Q in China.

Dong Chu (171095)
Hui-Peng Pan (5656933)
Xian-Chun Li (489708)
Dong Guo (442625)
Yun-Li Tao (392020)
Bai-Ming Liu (5656936)
You-Jun Zhang (2578120)

November 2013

In both A and B, individuals are grouped by sampling location. Abbreviations shown at the top of ...

Principal Coordinates Analysis (PCoA) of population pairwise FST values for microsatellite genotypes of Lucanus cervus.

Karen Cox (67096)
Niall McKeown (6635603)
Gloria Antonini (6635606)
Deborah Harvey (6635609)
Emanuela Solano (523155)
An Van Breusegem (6635612)
Arno Thomaes (6635615)

April 2019

The dots are coloured according to the clusters defined by BAPS (see Fig 5B and S2 Fig).</p

BAPS_files

Hyseni, Chaz
Garrick, Ryan C.

April 2019

Input files for BAPS analyses, including a file that shows the mtDNA COI+COII locus haplotypes for e...

Bayesian phylogram and haplotype network demonstrating the different mitochondrial DNA clades across the sampled distribution.

Jacobus H. Visser (630783)
Nigel C. Bennett (153769)
Bettine Jansen van Vuuren (102546)

September 2014

<a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0107226#pone-0107226-g002" ...

Bayesian cluster analysis in STRUCTURE.

Desiré L. Dalton (708977)
Birthe Linden (708978)
Kirsten Wimberger (708979)
Lisa Jane Nupen (708980)
Adrian S. W. Tordiffe (708981)
Peter John Taylor (708982)
M. Thabang Madisha (708983)
Antoinette Kotze (305075)

March 2015

(A) The average cluster membership (over 20 runs) for K = 2 of microsatellite genotypes of C</...

Median joining network of mtDNA cty b haplotypes.

Luca Cornetti (510467)
Michele Menegon (510468)
Giovanni Giovine (510469)
Benoit Heulin (510470)
Cristiano Vernesi (79090)

January 2014

Circles represent haplotypes, area is proportional to frequency and colour indicates the subspeci...

Letter Hierarchical and Spatially Explicit Clustering of DNA Sequences with BAPS Software

Lu Cheng
Thomas R. Connor
David M. Aanensen
Jukka Cor

August 2016

Phylogeographical analyses have become commonplace for a myriad of organisms with the advent of chea...

Analyses of molecular variance (AMOVA) of cpDNA and nrDNA data among clusters identified by Bayesian Analysis of Population Structure (BAPS) with cpDNA, nrDNA and concatenated data, as well as with the population clusters established by BAPS in the analysis with prior of 4 and 5 clusters.

Renan Milagres Lage Novaes (491929)
Renata Acácio Ribeiro (491930)
José Pires Lemos-Filho (491931)
Maria Bernadete Lovato (491932)

December 2013

aP-value<0.0001 for all analyses.See methods and results for more details about the...

MtCOI data as visualized in (a) a Bayesian tree (constructed in MrBayes MrBayes v3.04b), (b) haplotype network (constructed in TCS 1.21), and (c) spatial clustering of individuals (constructed in BAPS v5.4).

Terry V. Reynolds (603051)
Conrad A. Matthee (331178)
Sophie von der Heyden (603052)

July 2014

NuITS1 data is visualized in (d) a Bayesian tree and (e) a haplotype network. In b & e, the size ...

Bayesian clustering analysis of 358-bp mtDNA control region sequences from brown hares (L. europaeus) and mountain hares (L. timidus and introgressed haplotypes of this species in other hares) as implemented in BAPS v6. resulting in K = 6.

Mohammad Reza Ashrafzadeh (5819327)
Mihajla Djan (3297177)
László Szendrei (5819330)
Algimantas Paulauskas (5467499)
Massimo Scandura (534340)
Zoltán Bagi (471376)
Daniela Elena Ilie (799227)
Nikoloz Kerdikoshvili (5819333)
Panek Marek (5819336)
Noémi Soós (5819339)
Szilvia Kusza (534338)

October 2018

We detected 5 clusters within major lineages of L. europaeus; 2 and 3 clusters within lineages AME a...

Bayesian inference chronogram from BEAST estimated based on haplotypes from 58 sequences of the concatenated mitochondrial genes (COI and Cytb).

Willam Oliveira Da Silva (4319017)
Julio Cesar Pieczarka (711864)
Malcolm Andrew Ferguson-Smith (689950)
Patricia Caroline Mary O’Brien (689951)
Ana Cristina Mendes-Oliveira (847560)
Iracilda Sampaio (287329)
Jeferson Carneiro (3552767)
Cleusa Yoshiko Nagamachi (711860)

August 2017

The Bayesian posterior probability (BPP) is given at each node (BS/BPP). The symbols refer to spe...

Results from Bayesian clustering analyses of 51 Letharia specimens from [18].

Susanne Altermann (564736)
Steven D. Leavitt (491147)
Trevor Goward (564737)
Matthew P. Nelsen (564738)
H. Thorsten Lumbsch (110741)

May 2014

A. Individual assignments within population clusters in Letharia inferred using the Progra...

Results from the Bayesian Assignment Test (BAT) and the Haploweb (HW) approaches for species delimitation.

Aurélien Miralles (433352)
Miguel Vences (35733)

July 2013

Correspondence with clades is shown on the mtDNA gene tree (BI analysis of concatenated ND1 and 1...

Bayesian maximum clade credibility tree of the mtDNA dataset of Lucanus cervus obtained using BEAST.

Karen Cox (67096)
Niall McKeown (6635603)
Gloria Antonini (6635606)
Deborah Harvey (6635609)
Emanuela Solano (523155)
An Van Breusegem (6635612)
Arno Thomaes (6635615)

April 2019

Bayesian posterior probabilities higher than 0.5 are shown on nodes. Lineage I is indicated in blue ...

Bar plots of the Bayesian clustering analysis performed using Structure software on microsatellite data.

Andrea Kosovac (5184050)
Jes Johannesen (111765)
Oliver Krstić (5184044)
Milana Mitrović (3265527)
Tatjana Cvrković (5184047)
Ivo Toševski (3271545)
Jelena Jović (3271551)

May 2018

(A) 702 Hyalesthes obsoletus individuals from the 50 populations genotyped in this study a...

Bayesian cluster memberships obtained using BAPS for (A) the mtDNA dataset of <i>Lucanus cervus</i> and (B) the microsatellite genotypes.

Abstract

Extracted data

Bayesian cluster memberships obtained using BAPS for (A) the mtDNA dataset of <i>Lucanus cervus</i> and (B) the microsatellite genotypes.

Abstract

Extracted data

Related items

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