Additional file 1: of Functional adaptations in the cecal and colonic metagenomes associated with the consumption of transglycosylated starch in a pig model

Table S1. Selected KEGG orthology functions within the KEGG pathway ‘carbohydrate metabolism’ in cecal samples being differently enriched in CON- and TGS-fed pigs. Table S2. Selected KEGG orthology functions within the KEGG pathway ‘carbohydrate metabolism’ in colonic samples being differently enriched in CON- and TGS-fed pigs. Table S3. Taxonomic identity of lacZ genes being differently enriched in cecal and colonic samples of CON- and TGS-fed pigs. Table S4. Taxonomic identity of galA genes being differently enriched in cecal and colonic samples of CON- and TGS-fed pigs. Table S5. Taxonomic identity of amyA genes being differently enriched in cecal and colonic samples of CON- and TGS-fed pigs. Table S6. Taxonomic identity of araA genes being differently enriched in cecal and colonic samples of CON- and TGS-fed pigs. Table S7. Taxonomic identity of genes predicted to encode proteins within the KEGG pathway ‘lipopolysaccharide biosynthesis’ differently enriched in cecal and colonic samples of CON- and TGS-fed pigs. Table S8. Taxonomic identity of genes predicted to encode proteins within the KEGG pathway ‘flagellar assembly’ differently enriched in cecal and colonic samples of CON- and TGS-fed pigs. Figure S1. Heatmaps of abundances (hit counts) and distance matrices (Euclidian distance) of cecal and colonic samples at phylum level in control starch (CON)- and transglycosylated starch (TGS)-fed pigs (P1-P16). a phyla abundances in cecum; b phyla abundances in colon; c distance matrix of cecal samples; and d distance matrix of colonic samples. Hit counts were normalized with DESeq2-size factors. Abundance change significance between dietary starches is indicated by * (p < 0.05 (false discovery rate, q < 0.10)). Figure S2. Heatmaps of differently abundant genera (hit counts) in of cecal (a) and colonic samples (b) from control starch (CON)- and transglycosylated starch (TGS)-fed pigs (P1-P16). Only the 30 most abundant genera that were differently affected by the dietary starch source are presented. Hit counts were normalized with DESeq2-size factors. Abundance change significance between dietary starches is p < 0.05 (false discovery rate, q < 0.10)). (PDF 286 kb) (PDF 250 kb