We propose an incremental construction of multi-time-step integrators to accelerate polarizable point dipole molecular dynamics while preserving sampling efficiency. We start by building integrators using frequency-driven splittings of energy terms and a Velocity-Verlet evaluation of the most rapidly varying forces and compare a standard bonded/nonbonded split to a three-group split dividing nonbonded forces (including polarization) into short- and long-range contributions. We then introduce new approaches by coupling these splittings to Langevin dynamics and to Leimkuhler’s BAOAB integrator in order to reach larger time steps (6 fs) for long-range forces. We further increase sampling efficiency by (i) accelerating the polarization evaluati...
Iterative energy minimization with the aim of achieving self-consistency is a common feature of Born...
International audienceWe introduce a new class of methods, denoted as Truncated Conjugate Gradient (...
115 p.Thesis (Ph.D.)--University of Illinois at Urbana-Champaign, 1999.In molecular dynamics one sol...
In this paper, we investigate various numerical strategies to compute the direct space polarization ...
In order to accelerate molecular dynamics simulations using polarizable force fields, we combine a n...
In this paper, we investigate various numerical strategies to compute the direct space polarization ...
In this article, we present a parallel implementation of point dipole-based polarizable force fields...
International audienceIn this article, we present a parallel implementation of point dipole-based po...
The primary focus of this dissertation is the acceleration of the evaluation of the self-consistent ...
Classical molecular dynamics is a precious tools to explore the infinitely small world, e.g. when co...
International audienceWe present an implementation of the fast multipole method for computing Coulom...
Polarizable force fields are considered to be the single most significant development in the next-ge...
We introduce a new class of methods, denoted as Truncated Conjugate Gradient(TCG), to solve the many...
Polarization is the ability of a molecule’s electron density to respond to and influence its environ...
Reversible multiple timescale (MTS) integration algorithms have long been recognized as a straightfo...
Iterative energy minimization with the aim of achieving self-consistency is a common feature of Born...
International audienceWe introduce a new class of methods, denoted as Truncated Conjugate Gradient (...
115 p.Thesis (Ph.D.)--University of Illinois at Urbana-Champaign, 1999.In molecular dynamics one sol...
In this paper, we investigate various numerical strategies to compute the direct space polarization ...
In order to accelerate molecular dynamics simulations using polarizable force fields, we combine a n...
In this paper, we investigate various numerical strategies to compute the direct space polarization ...
In this article, we present a parallel implementation of point dipole-based polarizable force fields...
International audienceIn this article, we present a parallel implementation of point dipole-based po...
The primary focus of this dissertation is the acceleration of the evaluation of the self-consistent ...
Classical molecular dynamics is a precious tools to explore the infinitely small world, e.g. when co...
International audienceWe present an implementation of the fast multipole method for computing Coulom...
Polarizable force fields are considered to be the single most significant development in the next-ge...
We introduce a new class of methods, denoted as Truncated Conjugate Gradient(TCG), to solve the many...
Polarization is the ability of a molecule’s electron density to respond to and influence its environ...
Reversible multiple timescale (MTS) integration algorithms have long been recognized as a straightfo...
Iterative energy minimization with the aim of achieving self-consistency is a common feature of Born...
International audienceWe introduce a new class of methods, denoted as Truncated Conjugate Gradient (...
115 p.Thesis (Ph.D.)--University of Illinois at Urbana-Champaign, 1999.In molecular dynamics one sol...