The GMII protein (PDB code: 1HWW [3]) is shown as transparent, yellow-coloured cartoon with binding site residues being displayed as stick representation with yellow-coloured carbon atoms. Compound 18 is represented with orange coloured carbon atoms and black dashes indicate potential hydrogen bonds between the virtual screening hit and the target protein.</p
<p>(A) Three best PDMs, RASE0048 (red), RASE0049 (green), and RASE0143 (blue), docked in the binding...
<p>The figure shows the binding mode of (A) compound <b>37</b> and (B) compound <b>17</b>. Residues ...
<p>Residues are depicted in yellow or pink thin sticks according to the monomer they belong and <b>R...
<p>The protein surface is shown in gray. Oxygen atoms are shown in red and nitrogen atoms in blue. C...
<p>The protein is displayed in wall-eyed stereo pairs as a light blue ribbon with a semitransparent ...
<p>Displayed are EXPOSITE predictions of nine proteins (A) 1inc, (B) 1bid, (C) 1hew, (D) 1hfc, (E) 1...
<p>The protein of interest is represented as a grey cartoon while its partners are displayed as blue...
<p>Protein is shown in cartoon colored slate. Key residues are shown in green sticks. BPA is shown i...
<p>A) Cartoon representation highlighting the cell binding sites P4 (magenta) and P8 (blue). B) Surf...
<p>Both ligand and binding site plasticity contributes to changes in the binding mode between the li...
Additional file 2: Figure S2. Three-dimensional representation of the ROP18 ATP-binding pocket. Resi...
<p>For subfigures a, b and c; the protein residues and ligands are in line and stick representations...
<p>(A) Charmm_mini; (B) Charmm_ave; (C) Charmm_706ps. In the cartoon representations, the green and ...
<p>MOMP-derived peptide docking to I-Ab MCH II. Cartoon representations of the docked poses of four ...
<p>The binding modes of the proposed lead molecules are shown as ball and stick. Atoms colors are: H...
<p>(A) Three best PDMs, RASE0048 (red), RASE0049 (green), and RASE0143 (blue), docked in the binding...
<p>The figure shows the binding mode of (A) compound <b>37</b> and (B) compound <b>17</b>. Residues ...
<p>Residues are depicted in yellow or pink thin sticks according to the monomer they belong and <b>R...
<p>The protein surface is shown in gray. Oxygen atoms are shown in red and nitrogen atoms in blue. C...
<p>The protein is displayed in wall-eyed stereo pairs as a light blue ribbon with a semitransparent ...
<p>Displayed are EXPOSITE predictions of nine proteins (A) 1inc, (B) 1bid, (C) 1hew, (D) 1hfc, (E) 1...
<p>The protein of interest is represented as a grey cartoon while its partners are displayed as blue...
<p>Protein is shown in cartoon colored slate. Key residues are shown in green sticks. BPA is shown i...
<p>A) Cartoon representation highlighting the cell binding sites P4 (magenta) and P8 (blue). B) Surf...
<p>Both ligand and binding site plasticity contributes to changes in the binding mode between the li...
Additional file 2: Figure S2. Three-dimensional representation of the ROP18 ATP-binding pocket. Resi...
<p>For subfigures a, b and c; the protein residues and ligands are in line and stick representations...
<p>(A) Charmm_mini; (B) Charmm_ave; (C) Charmm_706ps. In the cartoon representations, the green and ...
<p>MOMP-derived peptide docking to I-Ab MCH II. Cartoon representations of the docked poses of four ...
<p>The binding modes of the proposed lead molecules are shown as ball and stick. Atoms colors are: H...
<p>(A) Three best PDMs, RASE0048 (red), RASE0049 (green), and RASE0143 (blue), docked in the binding...
<p>The figure shows the binding mode of (A) compound <b>37</b> and (B) compound <b>17</b>. Residues ...
<p>Residues are depicted in yellow or pink thin sticks according to the monomer they belong and <b>R...