Additional file 2: of Identification of key genes and its chromosome regions linked to drought responses in leaves across different crops through meta-analysis of RNA-Seq data

Additional file 2: Table S1. of Genome-wide analyses of direct target genes of four rice NAC-domain transcription factors involved in drought tolerance

Pil Chung (3567242)
Harin Jung (105575)
Yang Choi (3567236)
Ju-Kon Kim (105576)

January 2018

Information about RNA-Seq data obtained by Illumina Hi-Seq 2500 sequencing. 1Raw seq. Reads no.: Tot...

Additional file 1 of Molecular mechanisms of drought resistance using genome-wide association mapping in maize (Zea mays L.)

Zhang Ningning (17110383)
Liu Binbin (17110386)
Ye Fan (599934)
Chang Jianzhong (17110389)
Zhou Yuqian (17110392)
Wang Yejian (17110395)
Zhang Wenjie (17110398)
Zhang Xinghua (17110401)
Xu Shutu (17110404)
Xue Jiquan (17110407)

October 2023

Additional file 1: Figure S1. The distribution density of 42,003 SNPs on different chromosomes

Additional file 2: of Population genomics and climate adaptation of a C4 perennial grass, Panicum hallii (Poaceae)

Billie Gould (765350)
Juan Palacio-Mejia (5922809)
Jerry Jenkins (172005)
Sujan Mamidi (630183)
Kerrie Barry (276529)
Jeremy Schmutz (172027)
Thomas Juenger (4819752)
David Lowry (2647906)

November 2018

Table S1. GO terms significantly associated with each climate variable. Table S2. Candidate genes co...

Additional file 1: of Identification of key genes and its chromosome regions linked to drought responses in leaves across different crops through meta-analysis of RNA-Seq data

Jubina Benny (6300311)
Antonino Pisciotta (6691697)
Tiziano Caruso (3326730)
Federico Martinelli (161282)

May 2019

Table S1. The table consists of gene_ID, corresponding arabidopsis orthologs and log2 fold change va...

Additional file 11: of Identification of key genes and its chromosome regions linked to drought responses in leaves across different crops through meta-analysis of RNA-Seq data

Jubina Benny (6300311)
Antonino Pisciotta (6691697)
Tiziano Caruso (3326730)
Federico Martinelli (161282)

May 2019

Table S6. Genes involved in drought response corresponding to each of the study were shown. TAIR ID,...

Additional file 8: of Identification of key genes and its chromosome regions linked to drought responses in leaves across different crops through meta-analysis of RNA-Seq data

Jubina Benny (6300311)
Antonino Pisciotta (6691697)
Tiziano Caruso (3326730)
Federico Martinelli (161282)

May 2019

Figure S6. The 27 key genes that were drought-regulated in at least 7 of 9 studies were mapped in th...

Additional file 3: of Identification of key genes and its chromosome regions linked to drought responses in leaves across different crops through meta-analysis of RNA-Seq data

Jubina Benny (6300311)
Antonino Pisciotta (6691697)
Tiziano Caruso (3326730)
Federico Martinelli (161282)

May 2019

Figure S2. MapMan overview showing transcriptomic effects of drought in key categories selected such...

Additional file 12: of Identification of key genes and its chromosome regions linked to drought responses in leaves across different crops through meta-analysis of RNA-Seq data

Jubina Benny (6300311)
Antonino Pisciotta (6691697)
Tiziano Caruso (3326730)
Federico Martinelli (161282)

May 2019

Table S5. Genes involved in drought response at different leaf developmental stages (unique for seed...

Additional file 9: of Identification of key genes and its chromosome regions linked to drought responses in leaves across different crops through meta-analysis of RNA-Seq data

Jubina Benny (6300311)
Antonino Pisciotta (6691697)
Tiziano Caruso (3326730)
Federico Martinelli (161282)

May 2019

Table S3. Genes mapped in the chromosome which are involved in atleast 7 of 9 studies. Arabidopsis o...

Additional file 10: of Identification of key genes and its chromosome regions linked to drought responses in leaves across different crops through meta-analysis of RNA-Seq data

Jubina Benny (6300311)
Antonino Pisciotta (6691697)
Tiziano Caruso (3326730)
Federico Martinelli (161282)

May 2019

Table S4. Genes involved in the leaf developmental stage that are commonly drought-regulated were sh...

Additional file 6: of Identification of key genes and its chromosome regions linked to drought responses in leaves across different crops through meta-analysis of RNA-Seq data

Jubina Benny (6300311)
Antonino Pisciotta (6691697)
Tiziano Caruso (3326730)
Federico Martinelli (161282)

May 2019

Figure S5. Key genes encoding transcription factors, hormone metabolism and abiotic stress responses...

Additional file 7: of Identification of key genes and its chromosome regions linked to drought responses in leaves across different crops through meta-analysis of RNA-Seq data

Jubina Benny (6300311)
Antonino Pisciotta (6691697)
Tiziano Caruso (3326730)
Federico Martinelli (161282)

May 2019

Table S2. Genes mapped in the chromosome which are involved in transcription factors, abiotic stress...

Additional file 5: of Identification of key genes and its chromosome regions linked to drought responses in leaves across different crops through meta-analysis of RNA-Seq data

Jubina Benny (6300311)
Antonino Pisciotta (6691697)
Tiziano Caruso (3326730)
Federico Martinelli (161282)

May 2019

Figure S4. Protein-protein interaction network analysis predicted for genes commonly regulated in fi...

Additional file 1: of Assessment of shared alleles in drought-associated candidate genes among southern California white oak species (Quercus sect. Quercus)

Signem Oney-Birol (5809082)
Sorel Fitz-Gibbon (3251946)
Jin-Ming Chen (397344)
Paul Gugger (4349401)
Victoria Sork (304167)

October 2018

Candidate gene list associated with drought stress. Table S1. Candidate loci were taken from evoltre...

Additional file 10: of Evolutionary and expression analyses of soybean basic Leucine zipper transcription factor family

Man Zhang (466843)
Yanhui Liu (151413)
Hang Shi (120167)
Mingliang Guo (4877395)
Mengnan Chai (4877389)
Qing He (351975)
Maokai Yan (4877386)
Du Cao (4381888)
Lihua Zhao (566464)
Hanyang Cai (4877392)
Yuan Qin (260617)

February 2018

Figure S2. Validation of drought treatment RNA-seq data. (A) RNA-seq data of downregulated genes aft...

Additional file 2: Table S1. of Genome-wide analyses of direct target genes of four rice NAC-domain transcription factors involved in drought tolerance

Pil Chung (3567242)
Harin Jung (105575)
Yang Choi (3567236)
Ju-Kon Kim (105576)

January 2018

Information about RNA-Seq data obtained by Illumina Hi-Seq 2500 sequencing. 1Raw seq. Reads no.: Tot...

Additional file 1 of Molecular mechanisms of drought resistance using genome-wide association mapping in maize (Zea mays L.)

Zhang Ningning (17110383)
Liu Binbin (17110386)
Ye Fan (599934)
Chang Jianzhong (17110389)
Zhou Yuqian (17110392)
Wang Yejian (17110395)
Zhang Wenjie (17110398)
Zhang Xinghua (17110401)
Xu Shutu (17110404)
Xue Jiquan (17110407)

October 2023

Additional file 1: Figure S1. The distribution density of 42,003 SNPs on different chromosomes

Additional file 2: of Population genomics and climate adaptation of a C4 perennial grass, Panicum hallii (Poaceae)

Billie Gould (765350)
Juan Palacio-Mejia (5922809)
Jerry Jenkins (172005)
Sujan Mamidi (630183)
Kerrie Barry (276529)
Jeremy Schmutz (172027)
Thomas Juenger (4819752)
David Lowry (2647906)

November 2018

Table S1. GO terms significantly associated with each climate variable. Table S2. Candidate genes co...

Additional file 1: of Identification of key genes and its chromosome regions linked to drought responses in leaves across different crops through meta-analysis of RNA-Seq data

Jubina Benny (6300311)
Antonino Pisciotta (6691697)
Tiziano Caruso (3326730)
Federico Martinelli (161282)

May 2019

Table S1. The table consists of gene_ID, corresponding arabidopsis orthologs and log2 fold change va...

Additional file 11: of Identification of key genes and its chromosome regions linked to drought responses in leaves across different crops through meta-analysis of RNA-Seq data

Jubina Benny (6300311)
Antonino Pisciotta (6691697)
Tiziano Caruso (3326730)
Federico Martinelli (161282)

May 2019

Table S6. Genes involved in drought response corresponding to each of the study were shown. TAIR ID,...

Additional file 8: of Identification of key genes and its chromosome regions linked to drought responses in leaves across different crops through meta-analysis of RNA-Seq data

Jubina Benny (6300311)
Antonino Pisciotta (6691697)
Tiziano Caruso (3326730)
Federico Martinelli (161282)

May 2019

Figure S6. The 27 key genes that were drought-regulated in at least 7 of 9 studies were mapped in th...

Additional file 3: of Identification of key genes and its chromosome regions linked to drought responses in leaves across different crops through meta-analysis of RNA-Seq data

Jubina Benny (6300311)
Antonino Pisciotta (6691697)
Tiziano Caruso (3326730)
Federico Martinelli (161282)

May 2019

Figure S2. MapMan overview showing transcriptomic effects of drought in key categories selected such...

Additional file 12: of Identification of key genes and its chromosome regions linked to drought responses in leaves across different crops through meta-analysis of RNA-Seq data

Jubina Benny (6300311)
Antonino Pisciotta (6691697)
Tiziano Caruso (3326730)
Federico Martinelli (161282)

May 2019

Table S5. Genes involved in drought response at different leaf developmental stages (unique for seed...

Additional file 9: of Identification of key genes and its chromosome regions linked to drought responses in leaves across different crops through meta-analysis of RNA-Seq data

Jubina Benny (6300311)
Antonino Pisciotta (6691697)
Tiziano Caruso (3326730)
Federico Martinelli (161282)

May 2019

Table S3. Genes mapped in the chromosome which are involved in atleast 7 of 9 studies. Arabidopsis o...

Additional file 10: of Identification of key genes and its chromosome regions linked to drought responses in leaves across different crops through meta-analysis of RNA-Seq data

Jubina Benny (6300311)
Antonino Pisciotta (6691697)
Tiziano Caruso (3326730)
Federico Martinelli (161282)

May 2019

Table S4. Genes involved in the leaf developmental stage that are commonly drought-regulated were sh...

Additional file 6: of Identification of key genes and its chromosome regions linked to drought responses in leaves across different crops through meta-analysis of RNA-Seq data

Jubina Benny (6300311)
Antonino Pisciotta (6691697)
Tiziano Caruso (3326730)
Federico Martinelli (161282)

May 2019

Figure S5. Key genes encoding transcription factors, hormone metabolism and abiotic stress responses...

Additional file 7: of Identification of key genes and its chromosome regions linked to drought responses in leaves across different crops through meta-analysis of RNA-Seq data

Jubina Benny (6300311)
Antonino Pisciotta (6691697)
Tiziano Caruso (3326730)
Federico Martinelli (161282)

May 2019

Table S2. Genes mapped in the chromosome which are involved in transcription factors, abiotic stress...

Additional file 5: of Identification of key genes and its chromosome regions linked to drought responses in leaves across different crops through meta-analysis of RNA-Seq data

Jubina Benny (6300311)
Antonino Pisciotta (6691697)
Tiziano Caruso (3326730)
Federico Martinelli (161282)

May 2019

Figure S4. Protein-protein interaction network analysis predicted for genes commonly regulated in fi...

Additional file 1: of Assessment of shared alleles in drought-associated candidate genes among southern California white oak species (Quercus sect. Quercus)

Signem Oney-Birol (5809082)
Sorel Fitz-Gibbon (3251946)
Jin-Ming Chen (397344)
Paul Gugger (4349401)
Victoria Sork (304167)

October 2018

Candidate gene list associated with drought stress. Table S1. Candidate loci were taken from evoltre...

Additional file 10: of Evolutionary and expression analyses of soybean basic Leucine zipper transcription factor family

Man Zhang (466843)
Yanhui Liu (151413)
Hang Shi (120167)
Mingliang Guo (4877395)
Mengnan Chai (4877389)
Qing He (351975)
Maokai Yan (4877386)
Du Cao (4381888)
Lihua Zhao (566464)
Hanyang Cai (4877392)
Yuan Qin (260617)

February 2018

Figure S2. Validation of drought treatment RNA-seq data. (A) RNA-seq data of downregulated genes aft...

Additional file 2: Table S1. of Genome-wide analyses of direct target genes of four rice NAC-domain transcription factors involved in drought tolerance

Pil Chung (3567242)
Harin Jung (105575)
Yang Choi (3567236)
Ju-Kon Kim (105576)

January 2018

Information about RNA-Seq data obtained by Illumina Hi-Seq 2500 sequencing. 1Raw seq. Reads no.: Tot...

Additional file 1 of Molecular mechanisms of drought resistance using genome-wide association mapping in maize (Zea mays L.)

Zhang Ningning (17110383)
Liu Binbin (17110386)
Ye Fan (599934)
Chang Jianzhong (17110389)
Zhou Yuqian (17110392)
Wang Yejian (17110395)
Zhang Wenjie (17110398)
Zhang Xinghua (17110401)
Xu Shutu (17110404)
Xue Jiquan (17110407)

October 2023

Additional file 1: Figure S1. The distribution density of 42,003 SNPs on different chromosomes

Additional file 2: of Population genomics and climate adaptation of a C4 perennial grass, Panicum hallii (Poaceae)

Billie Gould (765350)
Juan Palacio-Mejia (5922809)
Jerry Jenkins (172005)
Sujan Mamidi (630183)
Kerrie Barry (276529)
Jeremy Schmutz (172027)
Thomas Juenger (4819752)
David Lowry (2647906)

November 2018

Table S1. GO terms significantly associated with each climate variable. Table S2. Candidate genes co...

Additional file 2: of Identification of key genes and its chromosome regions linked to drought responses in leaves across different crops through meta-analysis of RNA-Seq data

Abstract

Extracted data

Additional file 2: of Identification of key genes and its chromosome regions linked to drought responses in leaves across different crops through meta-analysis of RNA-Seq data

Abstract

Extracted data

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