Additional file 8: of Transcriptomic analysis between Normal and high-intake feeding geese provides insight into adipose deposition and susceptibility to fatty liver in migratory birds

Guosong Wang (6701024)
Long Jin (112089)
Yan Li (23143)
Qianzi Tang (785396)
Silu Hu (5998052)
Hengyong Xu (1391572)
Clare Gill (6701027)
Mingzhou Li (112100)
Jiwen Wang (4824936)

Publication date

May 2019

DOI

10.6084/m9.figshare.8129117.v1

Abstract

Table S2. Paired t-test of relative tissue weight between normal and high dietary group. Relative weightâ=âabsolute weight/body weight. (PDF 70 kb

Extracted data

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Additional file 8: of Transcriptomic analysis between Normal and high-intake feeding geese provides insight into adipose deposition and susceptibility to fatty liver in migratory birds

Guosong Wang (6701024)
Long Jin (112089)
Yan Li (23143)
Qianzi Tang (785396)
Silu Hu (5998052)
Hengyong Xu (1391572)
Clare Gill (6701027)
Mingzhou Li (112100)
Jiwen Wang (4824936)

Open link

Publication date

May 2019

DOI

10.6084/m9.figshare.8129117.v1

Abstract

Table S2. Paired t-test of relative tissue weight between normal and high dietary group. Relative weightâ=âabsolute weight/body weight. (PDF 70 kb

Extracted data

Wei Na (2618470)
Yuan-Yuan Wu (5269484)
Peng-Fei Gong (5269487)
Chun-Yan Wu (1818925)
Bo-Han Cheng (5269481)
Yu-Xiang Wang (32380)
Ning Wang (108353)
Zhi-Qiang Du (229183)
Hui Li (32376)

May 2018

Figure S3. Distribution of distinct tags. “Tags Containing N”, tags containing unknown bases; “Only ...

Additional file 3: Table S3. of Transcriptome profile of liver at different physiological stages reveals potential mode for lipid metabolism in laying hens

Hong Li (20183)
Taian Wang (3580109)
Chunlin Xu (1278819)
Dandan Wang (286632)
Junxiao Ren (3580115)
Yanmin Li (272090)
Yadong Tian (3580121)
Yanbin Wang (1758400)
Yuping Jiao (3580118)
Xiangtao Kang (3580112)
Xiaojun Liu (58952)

October 2015

SDE hepatic genes between two different physiological stages (juvenile and egg laying hens). (XLSX 1...

Additional file 7: of Transcriptomic analysis between Normal and high-intake feeding geese provides insight into adipose deposition and susceptibility to fatty liver in migratory birds

Guosong Wang (6701024)
Long Jin (112089)
Yan Li (23143)
Qianzi Tang (785396)
Silu Hu (5998052)
Hengyong Xu (1391572)
Clare Gill (6701027)
Mingzhou Li (112100)
Jiwen Wang (4824936)

May 2019

Table S1. Paired t-test of body weights between normal and high dietary group during the fattening p...

Additional file 1: of Transcriptomic analysis between Normal and high-intake feeding geese provides insight into adipose deposition and susceptibility to fatty liver in migratory birds

Guosong Wang (6701024)
Long Jin (112089)
Yan Li (23143)
Qianzi Tang (785396)
Silu Hu (5998052)
Hengyong Xu (1391572)
Clare Gill (6701027)
Mingzhou Li (112100)
Jiwen Wang (4824936)

May 2019

Figure S1. Oil red staining of adipose tissues and integrated optical density of three tissues. (PDF...

Additional file 3: of Transcriptomic analysis between Normal and high-intake feeding geese provides insight into adipose deposition and susceptibility to fatty liver in migratory birds

Guosong Wang (6701024)
Long Jin (112089)
Yan Li (23143)
Qianzi Tang (785396)
Silu Hu (5998052)
Hengyong Xu (1391572)
Clare Gill (6701027)
Mingzhou Li (112100)
Jiwen Wang (4824936)

May 2019

Figure S3. Principle components variance analysis of mRNA and lncRNA profiles. (PDF 509 kb

Additional file 9: of Transcriptomic analysis between Normal and high-intake feeding geese provides insight into adipose deposition and susceptibility to fatty liver in migratory birds

Guosong Wang (6701024)
Long Jin (112089)
Yan Li (23143)
Qianzi Tang (785396)
Silu Hu (5998052)
Hengyong Xu (1391572)
Clare Gill (6701027)
Mingzhou Li (112100)
Jiwen Wang (4824936)

May 2019

Table S3. Top 10 highly correlated mRNA-lncRNA pairs within 10Kb of each other. (PDF 77 kb

Additional file 4: of Transcriptomic analysis between Normal and high-intake feeding geese provides insight into adipose deposition and susceptibility to fatty liver in migratory birds

Guosong Wang (6701024)
Long Jin (112089)
Yan Li (23143)
Qianzi Tang (785396)
Silu Hu (5998052)
Hengyong Xu (1391572)
Clare Gill (6701027)
Mingzhou Li (112100)
Jiwen Wang (4824936)

May 2019

Figure S4. Pathway enrichment of up-regulated DEGs and down-regulated DEGs. (PDF 359 kb

Additional file 5: of Transcriptomic analysis between Normal and high-intake feeding geese provides insight into adipose deposition and susceptibility to fatty liver in migratory birds

Guosong Wang (6701024)
Long Jin (112089)
Yan Li (23143)
Qianzi Tang (785396)
Silu Hu (5998052)
Hengyong Xu (1391572)
Clare Gill (6701027)
Mingzhou Li (112100)
Jiwen Wang (4824936)

May 2019

Figure S5. Expression of mitochondria genes and important nuclear mitochondria-related genes. Asteri...

Additional file 1: of Embryonic transcriptome and proteome analyses on hepatic lipid metabolism in chickens divergently selected for abdominal fat content

Wei Na (2618470)
Yuan-Yuan Wu (5269484)
Peng-Fei Gong (5269487)
Chun-Yan Wu (1818925)
Bo-Han Cheng (5269481)
Yu-Xiang Wang (32380)
Ning Wang (108353)
Zhi-Qiang Du (229183)
Hui Li (32376)

May 2018

Figure S1. Number of genes expressed and novel transcripts. L and F represent the lean and fat chick...

Additional file 5: of Transcriptional analysis of abdominal fat in chickens divergently selected on bodyweight at two ages reveals novel mechanisms controlling adiposity: validating visceral adipose tissue as a dynamic endocrine and metabolic organ

C. Resnyk (4371526)
W. CarrĂŠ (4371559)
X. Wang (770484)
T. Porter (4371517)
J. Simon (4371529)
E. Le Bihan-Duval (4371523)
M. Duclos (4371508)
S. Aggrey (4371514)
L. Cogburn (4371520)

August 2017

Differentially expressed (DE) (FDR â¤0.05) identified by RNA-Seq analysis of abdominal fat in HG an...

Data_Sheet_1_Integrative analysis of transcriptome and lipidome reveals fructose pro-steatosis mechanism in goose fatty liver.PDF

Rongxue Wei (14367924)
Chunchun Han (735489)
Shouhai Wei (735490)
Yongqiang Teng (3078978)
Liang Li (46069)
Hehe Liu (735492)
Shengqiang Hu (1694164)
Bo Kang (3897697)
Hengyong Xu (1391572)

January 2023

To further explore the fructose pro-steatosis mechanism, we performed an integrative analysis of liv...

Data_Sheet_2_Integrative analysis of transcriptome and lipidome reveals fructose pro-steatosis mechanism in goose fatty liver.PDF

Rongxue Wei (14367924)
Chunchun Han (735489)
Shouhai Wei (735490)
Yongqiang Teng (3078978)
Liang Li (46069)
Hehe Liu (735492)
Shengqiang Hu (1694164)
Bo Kang (3897697)
Hengyong Xu (1391572)

January 2023

To further explore the fructose pro-steatosis mechanism, we performed an integrative analysis of liv...

Additional file 9: of Embryonic transcriptome and proteome analyses on hepatic lipid metabolism in chickens divergently selected for abdominal fat content

Wei Na (2618470)
Yuan-Yuan Wu (5269484)
Peng-Fei Gong (5269487)
Chun-Yan Wu (1818925)
Bo-Han Cheng (5269481)
Yu-Xiang Wang (32380)
Ning Wang (108353)
Zhi-Qiang Du (229183)
Hui Li (32376)

May 2018

Figure S4. Proportion of clean tag numbers (>â96%). L and F represent the lean and fat chicken lin...

Additional file 4: of RNA-seq analysis of hepatic gene expression of common Pekin, Muscovy, mule and hinny ducks fed ad libitum or overfed

Frédéric Hérault (176713)
Magalie Houée-Bigot (3464441)
Elisabeth Baéza (6183419)
Olivier Bouchez (104385)
Diane Esquerré (86529)
Christophe Klopp (120981)
Christian Diot (116581)

January 2019

Liver weights. Ap: Common Pekin duck; Cm: Muscovy duck; mu: Mule duck; hi: Hinny duck. (DOCX 24 kb

Additional file 8: of Embryonic transcriptome and proteome analyses on hepatic lipid metabolism in chickens divergently selected for abdominal fat content

Wei Na (2618470)
Yuan-Yuan Wu (5269484)
Peng-Fei Gong (5269487)
Chun-Yan Wu (1818925)
Bo-Han Cheng (5269481)
Yu-Xiang Wang (32380)
Ning Wang (108353)
Zhi-Qiang Du (229183)
Hui Li (32376)

May 2018

Figure S3. Distribution of distinct tags. “Tags Containing N”, tags containing unknown bases; “Only ...

Additional file 3: Table S3. of Transcriptome profile of liver at different physiological stages reveals potential mode for lipid metabolism in laying hens

Hong Li (20183)
Taian Wang (3580109)
Chunlin Xu (1278819)
Dandan Wang (286632)
Junxiao Ren (3580115)
Yanmin Li (272090)
Yadong Tian (3580121)
Yanbin Wang (1758400)
Yuping Jiao (3580118)
Xiangtao Kang (3580112)
Xiaojun Liu (58952)

October 2015

SDE hepatic genes between two different physiological stages (juvenile and egg laying hens). (XLSX 1...

Additional file 7: of Transcriptomic analysis between Normal and high-intake feeding geese provides insight into adipose deposition and susceptibility to fatty liver in migratory birds

Guosong Wang (6701024)
Long Jin (112089)
Yan Li (23143)
Qianzi Tang (785396)
Silu Hu (5998052)
Hengyong Xu (1391572)
Clare Gill (6701027)
Mingzhou Li (112100)
Jiwen Wang (4824936)

May 2019

Table S1. Paired t-test of body weights between normal and high dietary group during the fattening p...

Additional file 1: of Transcriptomic analysis between Normal and high-intake feeding geese provides insight into adipose deposition and susceptibility to fatty liver in migratory birds

Guosong Wang (6701024)
Long Jin (112089)
Yan Li (23143)
Qianzi Tang (785396)
Silu Hu (5998052)
Hengyong Xu (1391572)
Clare Gill (6701027)
Mingzhou Li (112100)
Jiwen Wang (4824936)

May 2019

Figure S1. Oil red staining of adipose tissues and integrated optical density of three tissues. (PDF...

Additional file 3: of Transcriptomic analysis between Normal and high-intake feeding geese provides insight into adipose deposition and susceptibility to fatty liver in migratory birds

Guosong Wang (6701024)
Long Jin (112089)
Yan Li (23143)
Qianzi Tang (785396)
Silu Hu (5998052)
Hengyong Xu (1391572)
Clare Gill (6701027)
Mingzhou Li (112100)
Jiwen Wang (4824936)

May 2019

Figure S3. Principle components variance analysis of mRNA and lncRNA profiles. (PDF 509 kb

Additional file 9: of Transcriptomic analysis between Normal and high-intake feeding geese provides insight into adipose deposition and susceptibility to fatty liver in migratory birds

Guosong Wang (6701024)
Long Jin (112089)
Yan Li (23143)
Qianzi Tang (785396)
Silu Hu (5998052)
Hengyong Xu (1391572)
Clare Gill (6701027)
Mingzhou Li (112100)
Jiwen Wang (4824936)

May 2019

Table S3. Top 10 highly correlated mRNA-lncRNA pairs within 10Kb of each other. (PDF 77 kb

Additional file 4: of Transcriptomic analysis between Normal and high-intake feeding geese provides insight into adipose deposition and susceptibility to fatty liver in migratory birds

Guosong Wang (6701024)
Long Jin (112089)
Yan Li (23143)
Qianzi Tang (785396)
Silu Hu (5998052)
Hengyong Xu (1391572)
Clare Gill (6701027)
Mingzhou Li (112100)
Jiwen Wang (4824936)

May 2019

Figure S4. Pathway enrichment of up-regulated DEGs and down-regulated DEGs. (PDF 359 kb

Additional file 5: of Transcriptomic analysis between Normal and high-intake feeding geese provides insight into adipose deposition and susceptibility to fatty liver in migratory birds

Guosong Wang (6701024)
Long Jin (112089)
Yan Li (23143)
Qianzi Tang (785396)
Silu Hu (5998052)
Hengyong Xu (1391572)
Clare Gill (6701027)
Mingzhou Li (112100)
Jiwen Wang (4824936)

May 2019

Figure S5. Expression of mitochondria genes and important nuclear mitochondria-related genes. Asteri...

Additional file 1: of Embryonic transcriptome and proteome analyses on hepatic lipid metabolism in chickens divergently selected for abdominal fat content

Wei Na (2618470)
Yuan-Yuan Wu (5269484)
Peng-Fei Gong (5269487)
Chun-Yan Wu (1818925)
Bo-Han Cheng (5269481)
Yu-Xiang Wang (32380)
Ning Wang (108353)
Zhi-Qiang Du (229183)
Hui Li (32376)

May 2018

Figure S1. Number of genes expressed and novel transcripts. L and F represent the lean and fat chick...

C. Resnyk (4371526)
W. CarrĂŠ (4371559)
X. Wang (770484)
T. Porter (4371517)
J. Simon (4371529)
E. Le Bihan-Duval (4371523)
M. Duclos (4371508)
S. Aggrey (4371514)
L. Cogburn (4371520)

August 2017

Differentially expressed (DE) (FDR â¤0.05) identified by RNA-Seq analysis of abdominal fat in HG an...

Data_Sheet_1_Integrative analysis of transcriptome and lipidome reveals fructose pro-steatosis mechanism in goose fatty liver.PDF

Rongxue Wei (14367924)
Chunchun Han (735489)
Shouhai Wei (735490)
Yongqiang Teng (3078978)
Liang Li (46069)
Hehe Liu (735492)
Shengqiang Hu (1694164)
Bo Kang (3897697)
Hengyong Xu (1391572)

January 2023

To further explore the fructose pro-steatosis mechanism, we performed an integrative analysis of liv...

Data_Sheet_2_Integrative analysis of transcriptome and lipidome reveals fructose pro-steatosis mechanism in goose fatty liver.PDF

Rongxue Wei (14367924)
Chunchun Han (735489)
Shouhai Wei (735490)
Yongqiang Teng (3078978)
Liang Li (46069)
Hehe Liu (735492)
Shengqiang Hu (1694164)
Bo Kang (3897697)
Hengyong Xu (1391572)

January 2023

To further explore the fructose pro-steatosis mechanism, we performed an integrative analysis of liv...

Additional file 9: of Embryonic transcriptome and proteome analyses on hepatic lipid metabolism in chickens divergently selected for abdominal fat content

Wei Na (2618470)
Yuan-Yuan Wu (5269484)
Peng-Fei Gong (5269487)
Chun-Yan Wu (1818925)
Bo-Han Cheng (5269481)
Yu-Xiang Wang (32380)
Ning Wang (108353)
Zhi-Qiang Du (229183)
Hui Li (32376)

May 2018

Figure S4. Proportion of clean tag numbers (>â96%). L and F represent the lean and fat chicken lin...

Additional file 4: of RNA-seq analysis of hepatic gene expression of common Pekin, Muscovy, mule and hinny ducks fed ad libitum or overfed

Frédéric Hérault (176713)
Magalie Houée-Bigot (3464441)
Elisabeth Baéza (6183419)
Olivier Bouchez (104385)
Diane Esquerré (86529)
Christophe Klopp (120981)
Christian Diot (116581)

January 2019

Liver weights. Ap: Common Pekin duck; Cm: Muscovy duck; mu: Mule duck; hi: Hinny duck. (DOCX 24 kb

Additional file 8: of Embryonic transcriptome and proteome analyses on hepatic lipid metabolism in chickens divergently selected for abdominal fat content

Wei Na (2618470)
Yuan-Yuan Wu (5269484)
Peng-Fei Gong (5269487)
Chun-Yan Wu (1818925)
Bo-Han Cheng (5269481)
Yu-Xiang Wang (32380)
Ning Wang (108353)
Zhi-Qiang Du (229183)
Hui Li (32376)

May 2018

Figure S3. Distribution of distinct tags. “Tags Containing N”, tags containing unknown bases; “Only ...

Additional file 3: Table S3. of Transcriptome profile of liver at different physiological stages reveals potential mode for lipid metabolism in laying hens

Hong Li (20183)
Taian Wang (3580109)
Chunlin Xu (1278819)
Dandan Wang (286632)
Junxiao Ren (3580115)
Yanmin Li (272090)
Yadong Tian (3580121)
Yanbin Wang (1758400)
Yuping Jiao (3580118)
Xiangtao Kang (3580112)
Xiaojun Liu (58952)

October 2015

SDE hepatic genes between two different physiological stages (juvenile and egg laying hens). (XLSX 1...

Additional file 8: of Transcriptomic analysis between Normal and high-intake feeding geese provides insight into adipose deposition and susceptibility to fatty liver in migratory birds

Abstract

Extracted data

Additional file 8: of Transcriptomic analysis between Normal and high-intake feeding geese provides insight into adipose deposition and susceptibility to fatty liver in migratory birds

Abstract

Extracted data

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