Additional file 7: of Comparative transcriptome analysis revealing the potential mechanism of seed germination stimulated by exogenous gibberellin in Fraxinus hupehensis

Transcriptome analysis of Phelipanche aegyptiaca seed germination mechanisms stimulated by fluridone, TIS108, and GR24.

Ya Zhou Bao
Zhao Qun Yao
Xiao Lei Cao
Jin Feng Peng
Ying Xu
Mei Xiu Chen
Si Feng Zhao

January 2017

P. aegyptiaca is one of the most destructive root parasitic plants worldwide, causing serious damage...

Additional file 1: of Insights into the correlation between Physiological changes in and seed development of tartary buckwheat (Fagopyrum tataricum Gaertn.)

Moyang Liu (5707904)
Zhaotang Ma (5707907)
Tianrun Zheng (5707910)
Wenjun Sun (446555)
Yanjun Zhang (168997)
Weiqiong Jin (5707913)
Junyi Zhan (5707916)
Yuntao Cai (5707919)
Yujia Tang (5707922)
Qi Wu (263110)
Zizhong Tang (4104571)
Tongliang Bu (5707925)
Chenglei Li (2023768)
Hui Chen (28597)

September 2018

Figure S1. DEGs related to flavonoid in three samples. Figure S2. DEGs related to starch in three sa...

Additional file 6: of Transcriptome sequencing and analysis during seed growth and development in Euryale ferox Salisb

Xian Liu (191882)
Zhen He (286179)
Yulai Yin (5198072)
Xu Xu (3380453)
Weiwen Wu (4412059)
Liangjun Li (38108)

May 2018

Table S4. The FDR of differentially expressed genes (DEGs) identified in pairwise comparisons of dev...

Additional file 4: of Comparative transcriptome analysis revealing the potential mechanism of seed germination stimulated by exogenous gibberellin in Fraxinus hupehensis

Qiling Song (6705284)
Shuiyuan Cheng (3151488)
Zexiong Chen (797402)
Gongping Nie (6705287)
Feng Xu (89016)
Jian Zhang (1682)
Mingqin Zhou (6705290)
Weiwei Zhang (222964)
Yongling Liao (6705293)
Jiabao Ye (6705296)

May 2019

Figure S2. Clusters of DEGs obtained by K-means. DEGs were divided into eight subclasses. All data s...

Additional file 3: of Comparative transcriptome analysis revealing the potential mechanism of seed germination stimulated by exogenous gibberellin in Fraxinus hupehensis

Qiling Song (6705284)
Shuiyuan Cheng (3151488)
Zexiong Chen (797402)
Gongping Nie (6705287)
Feng Xu (89016)
Jian Zhang (1682)
Mingqin Zhou (6705290)
Weiwei Zhang (222964)
Yongling Liao (6705293)
Jiabao Ye (6705296)

May 2019

Figure S1. Correlation coefficients among the RPKM of unigenes of the samples. All data shown indica...

Additional file 5: of Comparative transcriptome analysis revealing the potential mechanism of seed germination stimulated by exogenous gibberellin in Fraxinus hupehensis

Qiling Song (6705284)
Shuiyuan Cheng (3151488)
Zexiong Chen (797402)
Gongping Nie (6705287)
Feng Xu (89016)
Jian Zhang (1682)
Mingqin Zhou (6705290)
Weiwei Zhang (222964)
Yongling Liao (6705293)
Jiabao Ye (6705296)

May 2019

Figure S3. Hierarchical clustering of DEGs between the W and CK groups, the G and CK groups, and the...

Additional file 1 of Transcriptome analysis and identification of abscisic acid and gibberellin-related genes during seed development of alfalfa (Medicago sativa L.)

Lu Zhao (296389)
Mingyu Li (482173)
Xiaomei Ma (615999)
Dong Luo (428003)
Qiang Zhou (29805)
Wenxian Liu (769192)
Zhipeng Liu (380923)

September 2022

Additional file 1: Table S1. Summary statistics of RNA-Seq results in seed development of Medicago s...

Additional file 9: Figure S9. of Exogenous auxin regulates multi-metabolic network and embryo development, controlling seed secondary dormancy and germination in Nicotiana tabacum L.

Zhenhua Li (312199)
Jie Zhang (64655)
Yiling Liu (150663)
Jiehong Zhao (3499199)
Junjie Fu (1947568)
Xueliang Ren (3499202)
Guoying Wang (159551)
Jianhua Wang (159545)

February 2016

Differential expressed unigenes enriched in flavonoid biosynthesis KEGG pathway in auxin-responsive ...

Multiple transcripts of gibberellin-regulated proteins, flavonoid pathway enzymes, and two transcription factors with high TE values in the C25 stage of seed development.

Md. Shamimuzzaman (5003501)
Lila Vodkin (78271)

March 2018

Multiple transcripts of gibberellin-regulated proteins, flavonoid pathway enzymes, and two transc...

Additional file 7: of Transcriptome characterization of moso bamboo (Phyllostachys edulis) seedlings in response to exogenous gibberellin applications

Hangxiao Zhang (4589617)
Huihui Wang (442901)
Qiang Zhu (188733)
Yubang Gao (4589626)
Huiyuan Wang (1333110)
Liangzhen Zhao (5431352)
Yongsheng Wang (169356)
Feihu Xi (5431349)
Wenfei Wang (535327)
Yanqiu Yang (1415734)
Chentao Lin (114464)
Lianfeng Gu (622608)

June 2018

Table S7. List of hormone-related and splicing factor genes, which have different isoforms after GA ...

Comparative transcriptome analysis of the effects of friction and exogenous gibberellin on germination in Abrus cantoniensis

Zhu Yanxia (14195783)
Jiang Jianping (14195786)
Huang Yanfen (14195789)
Dong Qingsong (14195792)
Wei Kunhua (14195795)

November 2022

The seeds of Abrus cantoniensis (A. cantonensis) have dormancy characteristics with very low germina...

Comparative transcriptome analysis of the effects of friction and exogenous gibberellin on germination in Abrus cantoniensis

Zhu Yanxia
Jiang Jianping
Huang Yanfen
Dong Qingsong
Wei Kunhua

December 2022

The seeds of Abrus cantoniensis (A. cantonensis) have dormancy characteristics with very low germina...

Additional file 7: of Transcriptomic analysis of Perilla frutescens seed to insight into the biosynthesis and metabolic of unsaturated fatty acids

BingNan Liao (4991639)
YouJin Hao (433834)
JunXing Lu (4991642)
HuiYang Bai (4991645)
Li Guan (115858)
Tao Zhang (43681)

March 2018

Table S5. KEGG pathway enrichment analysis of differentially expressed genes between 20 DAF and 10 D...

Additional file 6: of Transcriptomic analysis of Perilla frutescens seed to insight into the biosynthesis and metabolic of unsaturated fatty acids

BingNan Liao (4991639)
YouJin Hao (433834)
JunXing Lu (4991642)
HuiYang Bai (4991645)
Li Guan (115858)
Tao Zhang (43681)

March 2018

Table S4. KEGG pathway enrichment analysis of differentially expressed genes between 10 DAF and 5 DA...

Additional file 2 of Transcriptome analysis and identification of abscisic acid and gibberellin-related genes during seed development of alfalfa (Medicago sativa L.)

Lu Zhao (296389)
Mingyu Li (482173)
Xiaomei Ma (615999)
Dong Luo (428003)
Qiang Zhou (29805)
Wenxian Liu (769192)
Zhipeng Liu (380923)

September 2022

Additional file 2: Fig. S1. Identification of the DEGs in five development stages: S2 vs. S1 (A); S3...

Transcriptome analysis of Phelipanche aegyptiaca seed germination mechanisms stimulated by fluridone, TIS108, and GR24.

Ya Zhou Bao
Zhao Qun Yao
Xiao Lei Cao
Jin Feng Peng
Ying Xu
Mei Xiu Chen
Si Feng Zhao

January 2017

P. aegyptiaca is one of the most destructive root parasitic plants worldwide, causing serious damage...

Additional file 1: of Insights into the correlation between Physiological changes in and seed development of tartary buckwheat (Fagopyrum tataricum Gaertn.)

Moyang Liu (5707904)
Zhaotang Ma (5707907)
Tianrun Zheng (5707910)
Wenjun Sun (446555)
Yanjun Zhang (168997)
Weiqiong Jin (5707913)
Junyi Zhan (5707916)
Yuntao Cai (5707919)
Yujia Tang (5707922)
Qi Wu (263110)
Zizhong Tang (4104571)
Tongliang Bu (5707925)
Chenglei Li (2023768)
Hui Chen (28597)

September 2018

Figure S1. DEGs related to flavonoid in three samples. Figure S2. DEGs related to starch in three sa...

Additional file 6: of Transcriptome sequencing and analysis during seed growth and development in Euryale ferox Salisb

Xian Liu (191882)
Zhen He (286179)
Yulai Yin (5198072)
Xu Xu (3380453)
Weiwen Wu (4412059)
Liangjun Li (38108)

May 2018

Table S4. The FDR of differentially expressed genes (DEGs) identified in pairwise comparisons of dev...

Additional file 4: of Comparative transcriptome analysis revealing the potential mechanism of seed germination stimulated by exogenous gibberellin in Fraxinus hupehensis

Qiling Song (6705284)
Shuiyuan Cheng (3151488)
Zexiong Chen (797402)
Gongping Nie (6705287)
Feng Xu (89016)
Jian Zhang (1682)
Mingqin Zhou (6705290)
Weiwei Zhang (222964)
Yongling Liao (6705293)
Jiabao Ye (6705296)

May 2019

Figure S2. Clusters of DEGs obtained by K-means. DEGs were divided into eight subclasses. All data s...

Additional file 3: of Comparative transcriptome analysis revealing the potential mechanism of seed germination stimulated by exogenous gibberellin in Fraxinus hupehensis

Qiling Song (6705284)
Shuiyuan Cheng (3151488)
Zexiong Chen (797402)
Gongping Nie (6705287)
Feng Xu (89016)
Jian Zhang (1682)
Mingqin Zhou (6705290)
Weiwei Zhang (222964)
Yongling Liao (6705293)
Jiabao Ye (6705296)

May 2019

Figure S1. Correlation coefficients among the RPKM of unigenes of the samples. All data shown indica...

Additional file 5: of Comparative transcriptome analysis revealing the potential mechanism of seed germination stimulated by exogenous gibberellin in Fraxinus hupehensis

Qiling Song (6705284)
Shuiyuan Cheng (3151488)
Zexiong Chen (797402)
Gongping Nie (6705287)
Feng Xu (89016)
Jian Zhang (1682)
Mingqin Zhou (6705290)
Weiwei Zhang (222964)
Yongling Liao (6705293)
Jiabao Ye (6705296)

May 2019

Figure S3. Hierarchical clustering of DEGs between the W and CK groups, the G and CK groups, and the...

Additional file 1 of Transcriptome analysis and identification of abscisic acid and gibberellin-related genes during seed development of alfalfa (Medicago sativa L.)

Lu Zhao (296389)
Mingyu Li (482173)
Xiaomei Ma (615999)
Dong Luo (428003)
Qiang Zhou (29805)
Wenxian Liu (769192)
Zhipeng Liu (380923)

September 2022

Additional file 1: Table S1. Summary statistics of RNA-Seq results in seed development of Medicago s...

Additional file 9: Figure S9. of Exogenous auxin regulates multi-metabolic network and embryo development, controlling seed secondary dormancy and germination in Nicotiana tabacum L.

Zhenhua Li (312199)
Jie Zhang (64655)
Yiling Liu (150663)
Jiehong Zhao (3499199)
Junjie Fu (1947568)
Xueliang Ren (3499202)
Guoying Wang (159551)
Jianhua Wang (159545)

February 2016

Differential expressed unigenes enriched in flavonoid biosynthesis KEGG pathway in auxin-responsive ...

Multiple transcripts of gibberellin-regulated proteins, flavonoid pathway enzymes, and two transcription factors with high TE values in the C25 stage of seed development.

Md. Shamimuzzaman (5003501)
Lila Vodkin (78271)

March 2018

Multiple transcripts of gibberellin-regulated proteins, flavonoid pathway enzymes, and two transc...

Additional file 7: of Transcriptome characterization of moso bamboo (Phyllostachys edulis) seedlings in response to exogenous gibberellin applications

Hangxiao Zhang (4589617)
Huihui Wang (442901)
Qiang Zhu (188733)
Yubang Gao (4589626)
Huiyuan Wang (1333110)
Liangzhen Zhao (5431352)
Yongsheng Wang (169356)
Feihu Xi (5431349)
Wenfei Wang (535327)
Yanqiu Yang (1415734)
Chentao Lin (114464)
Lianfeng Gu (622608)

June 2018

Table S7. List of hormone-related and splicing factor genes, which have different isoforms after GA ...

Comparative transcriptome analysis of the effects of friction and exogenous gibberellin on germination in Abrus cantoniensis

Zhu Yanxia (14195783)
Jiang Jianping (14195786)
Huang Yanfen (14195789)
Dong Qingsong (14195792)
Wei Kunhua (14195795)

November 2022

The seeds of Abrus cantoniensis (A. cantonensis) have dormancy characteristics with very low germina...

Comparative transcriptome analysis of the effects of friction and exogenous gibberellin on germination in Abrus cantoniensis

Zhu Yanxia
Jiang Jianping
Huang Yanfen
Dong Qingsong
Wei Kunhua

December 2022

The seeds of Abrus cantoniensis (A. cantonensis) have dormancy characteristics with very low germina...

Additional file 7: of Transcriptomic analysis of Perilla frutescens seed to insight into the biosynthesis and metabolic of unsaturated fatty acids

BingNan Liao (4991639)
YouJin Hao (433834)
JunXing Lu (4991642)
HuiYang Bai (4991645)
Li Guan (115858)
Tao Zhang (43681)

March 2018

Table S5. KEGG pathway enrichment analysis of differentially expressed genes between 20 DAF and 10 D...

Additional file 6: of Transcriptomic analysis of Perilla frutescens seed to insight into the biosynthesis and metabolic of unsaturated fatty acids

BingNan Liao (4991639)
YouJin Hao (433834)
JunXing Lu (4991642)
HuiYang Bai (4991645)
Li Guan (115858)
Tao Zhang (43681)

March 2018

Table S4. KEGG pathway enrichment analysis of differentially expressed genes between 10 DAF and 5 DA...

Additional file 2 of Transcriptome analysis and identification of abscisic acid and gibberellin-related genes during seed development of alfalfa (Medicago sativa L.)

Lu Zhao (296389)
Mingyu Li (482173)
Xiaomei Ma (615999)
Dong Luo (428003)
Qiang Zhou (29805)
Wenxian Liu (769192)
Zhipeng Liu (380923)

September 2022

Additional file 2: Fig. S1. Identification of the DEGs in five development stages: S2 vs. S1 (A); S3...

Transcriptome analysis of Phelipanche aegyptiaca seed germination mechanisms stimulated by fluridone, TIS108, and GR24.

Ya Zhou Bao
Zhao Qun Yao
Xiao Lei Cao
Jin Feng Peng
Ying Xu
Mei Xiu Chen
Si Feng Zhao

January 2017

P. aegyptiaca is one of the most destructive root parasitic plants worldwide, causing serious damage...

Additional file 1: of Insights into the correlation between Physiological changes in and seed development of tartary buckwheat (Fagopyrum tataricum Gaertn.)

Moyang Liu (5707904)
Zhaotang Ma (5707907)
Tianrun Zheng (5707910)
Wenjun Sun (446555)
Yanjun Zhang (168997)
Weiqiong Jin (5707913)
Junyi Zhan (5707916)
Yuntao Cai (5707919)
Yujia Tang (5707922)
Qi Wu (263110)
Zizhong Tang (4104571)
Tongliang Bu (5707925)
Chenglei Li (2023768)
Hui Chen (28597)

September 2018

Figure S1. DEGs related to flavonoid in three samples. Figure S2. DEGs related to starch in three sa...

Additional file 6: of Transcriptome sequencing and analysis during seed growth and development in Euryale ferox Salisb

Xian Liu (191882)
Zhen He (286179)
Yulai Yin (5198072)
Xu Xu (3380453)
Weiwen Wu (4412059)
Liangjun Li (38108)

May 2018

Table S4. The FDR of differentially expressed genes (DEGs) identified in pairwise comparisons of dev...

Additional file 7: of Comparative transcriptome analysis revealing the potential mechanism of seed germination stimulated by exogenous gibberellin in Fraxinus hupehensis

Abstract

Extracted data

Additional file 7: of Comparative transcriptome analysis revealing the potential mechanism of seed germination stimulated by exogenous gibberellin in Fraxinus hupehensis

Abstract

Extracted data

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