Additional file 2: of DNA methylation changes related to nutritional deprivation: a genome-wide analysis of population and in vitro data

Additional file 5: Table S8. of The senescent methylome and its relationship with cancer, ageing and germline genetic variation in humans

Robert Lowe (724766)
Marita Overhoff (3566255)
Sreeram Ramagopalan (3253560)
James Garbe (3566252)
James Koh (3045738)
Martha Stampfer (279112)
David Beach (3566249)
Vardhman Rakyan (3191682)
Cleo Bishop (3566258)

September 2015

Table containing the P values for the difference in methylation between the EP cells and each of the...

Additional file 5 of Genetic impacts on DNA methylation help elucidate regulatory genomic processes

Sergio Villicaña (10732756)
Juan Castillo-Fernandez (3861310)
Eilis Hannon (812105)
Colette Christiansen (11419455)
Pei-Chien Tsai (169868)
Jane Maddock (4227451)
Diana Kuh (188923)
Matthew Suderman (228692)
Christine Power (448073)
Caroline Relton (3457379)
George Ploubidis (3067758)
Andrew Wong (256256)
Rebecca Hardy (188906)
Alissa Goodman (4535137)
Ken K. Ong (8136300)
Jordana T. Bell (9944351)

July 2023

Additional file 5: Tables S26–S27. Table S26. List of GWASs summary statistics used for the SMR. Tab...

Additional file 4: of Genome-wide methylation is modified by caloric restriction in Daphnia magna

Jack Hearn (3243372)
Marianne Pearson (6440924)
Mark Blaxter (50235)
Philip Wilson (104007)
Tom Little (62832)

March 2019

Gene annotations for genes with overlapping significantly hypermethylated regions under caloric rest...

Additional file 1: of DNA methylation changes related to nutritional deprivation: a genome-wide analysis of population and in vitro data

Yujie He (3068052)
Lot Witte (6708743)
Lotte Houtepen (5454887)
Danny Nispeling (6708746)
Zhida Xu (2023525)
Qiong Yu (446491)
Yaqin Yu (605430)
Elly Hol (805688)
RenĂŠ Kahn (6708749)
Marco Boks (3529895)

May 2019

A. QQ plot of the p value distribution for the regression of DNA methylation and Chinese famine samp...

Additional file 3: of DNA methylation changes related to nutritional deprivation: a genome-wide analysis of population and in vitro data

Yujie He (3068052)
Lot Witte (6708743)
Lotte Houtepen (5454887)
Danny Nispeling (6708746)
Zhida Xu (2023525)
Qiong Yu (446491)
Yaqin Yu (605430)
Elly Hol (805688)
RenĂŠ Kahn (6708749)
Marco Boks (3529895)

May 2019

Permutation analysis of DMRs. The file contains the results of the permutation analysis. (DOCX 14 kb

Additional file 2: of MeDEStrand: an improved method to infer genome-wide absolute methylation levels from DNA enrichment data

Jingting Xu (3134982)
Shimeng Liu (6112952)
Ping Yin (54021)
Serdar Bulun (6112955)
Yang Dai (36730)

December 2018

Table S1. Pearson correlation coefficient of bin methylation level for the positive and negative DNA...

Additional file 1: of Many obesity-associated SNPs strongly associate with DNA methylation changes at proximal promoters and enhancers

Sarah Voisin (695350)
Markus Almén (3432941)
Galina Zheleznyakova (625786)
Lina Lundberg (3557939)
Sanaz Zarei (3557936)
Sandra Castillo (218332)
Fia Eriksson (3557933)
Emil Nilsson (3557942)
Matthias Blüher (103713)
Yvonne Böttcher (103725)
Peter Kovacs (103720)
Janis Klovins (76934)
Mathias Rask-Andersen (446207)
Helgi Schiöth (3432935)

October 2015

Description of the 52 investigated SNPs. SNPs in bold are SNPs for which significant associations wi...

Additional file 2: of DNA methylation patterns in peripheral blood mononuclear cells from Holstein cattle with variable milk yield

Chad Dechow (5849663)
Wan-Sheng Liu (200939)

October 2018

Table S2. Chromosome, start nucleotide, end nucleotide, length, summit, tags, Log P, and fold enrich...

Additional file 1: of Decreased methylation in the SNAI2 and ADAM23 genes associated with de-differentiation and haematogenous dissemination in breast cancers

Lenka Kalinkova (5725769)
Iveta Zmetakova (5725772)
Bozena Smolkova (5725775)
Gabriel Minarik (2512540)
Tatiana Sedlackova (5725778)
Viera Horvathova Kajabova (5725781)
Zuzana Cierna (5725784)
Michal Mego (774807)
Ivana Fridrichova (5725787)

September 2018

DNA methylation levels in various types of samples from BC patients with different histological grad...

Additional file 2: of DNA methylation of the promoter region of bnip3 and bnip3l genes induced by metabolic programming

Vincent Veron (154657)
Lucie Marandel (3994841)
Jingwei Liu (525202)
Emilio VĂŠlez (5755055)
Olivier Lepais (464756)
StĂŠphane Panserat (3994844)
Sandrine Skiba (5755040)
Iban Seiliez (320251)

September 2018

Table S1. Formulation and proximate composition of diet used in hypoxia stimulus [14]. Table S2. For...

Additional file 1: of The clinical significance of FAM19A4 methylation in high-risk HPV-positive cervical samples for the detection of cervical (pre)cancer in Chinese women

Qiaowen Bu (6021281)
Sanfeng Wang (5845580)
Jian Ma (170138)
Xiangcheng Zhou (6021284)
Guiying Hu (466655)
Hua Deng (1335612)
Xiaoli Sun (140478)
Xiaoshan Hong (6021287)
Hengying Wu (6021290)
Liang Zhang (41392)
Xiping Luo (2591440)

November 2018

Amplification curve of FAM19A4 and ACTB genes in cervical cancer, normal peripheral blood DNA, and d...

Additional file 1 of A comprehensive analysis of 195 DNA methylomes reveals shared and cell-specific features of partially methylated domains

Abdulrahman Salhab (5802770)
Karl NordstrĂśm (5802773)
Gilles Gasparoni (646130)
Kathrin Kattler (5077079)
Peter Ebert (3530948)
Fidel Ramirez (590934)
Laura Arrigoni (3530966)
Fabian MĂźller (5802776)
Julia Polansky (24043)
Cristina Cadenas (304878)
Jan G.Hengstler (5802779)
Thomas Lengauer (14699)
Thomas Manke (43376)
JĂśrn Walter (5559962)

September 2018

List of samples. XLSX sheet with list of samples and the corresponding URLs and accession numbers of...

Additional file 3: of Genome-wide methylation is modified by caloric restriction in Daphnia magna

Jack Hearn (3243372)
Marianne Pearson (6440924)
Mark Blaxter (50235)
Philip Wilson (104007)
Tom Little (62832)

March 2019

Gene annotations for genes with overlapping significantly hypomethylated regions under caloric restr...

Additional file 1: of DNA methylation patterns in peripheral blood mononuclear cells from Holstein cattle with variable milk yield

Chad Dechow (5849663)
Wan-Sheng Liu (200939)

October 2018

Table S1. Chromosome, start nucleotide, end nucleotide, length, summit, tags, Log P, and fold enrich...

Additional file 2: Figure S1. of Population whole-genome bisulfite sequencing across two tissues highlights the environment as the principal source of human methylome variation

Stephan Busche (3465698)
Xiaojian Shao (3465695)
Maxime Caron (3465692)
Tony Kwan (232656)
Fiona Allum (3465704)
Warren Cheung (83908)
Bing Ge (42609)
Susan Westfall (392141)
Marie-Michelle Simon (3465701)
Amy Barrett (166784)
Jordana Bell (667256)
Mark McCarthy (157523)
Panos Deloukas (21564)
Mathieu Blanchette (5083)
Guillaume Bourque (123960)
Timothy Spector (348486)
Mark Lathrop (17971)
Tomi Pastinen (15737)
Elin Grundberg (116416)

December 2015

Number of detected CpG-sites per mean genome coverage. Figure S2. Overall CpG-site methylation level...

Additional file 5: Table S8. of The senescent methylome and its relationship with cancer, ageing and germline genetic variation in humans

Robert Lowe (724766)
Marita Overhoff (3566255)
Sreeram Ramagopalan (3253560)
James Garbe (3566252)
James Koh (3045738)
Martha Stampfer (279112)
David Beach (3566249)
Vardhman Rakyan (3191682)
Cleo Bishop (3566258)

September 2015

Table containing the P values for the difference in methylation between the EP cells and each of the...

Additional file 5 of Genetic impacts on DNA methylation help elucidate regulatory genomic processes

Sergio Villicaña (10732756)
Juan Castillo-Fernandez (3861310)
Eilis Hannon (812105)
Colette Christiansen (11419455)
Pei-Chien Tsai (169868)
Jane Maddock (4227451)
Diana Kuh (188923)
Matthew Suderman (228692)
Christine Power (448073)
Caroline Relton (3457379)
George Ploubidis (3067758)
Andrew Wong (256256)
Rebecca Hardy (188906)
Alissa Goodman (4535137)
Ken K. Ong (8136300)
Jordana T. Bell (9944351)

July 2023

Additional file 5: Tables S26–S27. Table S26. List of GWASs summary statistics used for the SMR. Tab...

Additional file 4: of Genome-wide methylation is modified by caloric restriction in Daphnia magna

Jack Hearn (3243372)
Marianne Pearson (6440924)
Mark Blaxter (50235)
Philip Wilson (104007)
Tom Little (62832)

March 2019

Gene annotations for genes with overlapping significantly hypermethylated regions under caloric rest...

Additional file 1: of DNA methylation changes related to nutritional deprivation: a genome-wide analysis of population and in vitro data

Yujie He (3068052)
Lot Witte (6708743)
Lotte Houtepen (5454887)
Danny Nispeling (6708746)
Zhida Xu (2023525)
Qiong Yu (446491)
Yaqin Yu (605430)
Elly Hol (805688)
RenĂŠ Kahn (6708749)
Marco Boks (3529895)

May 2019

A. QQ plot of the p value distribution for the regression of DNA methylation and Chinese famine samp...

Additional file 3: of DNA methylation changes related to nutritional deprivation: a genome-wide analysis of population and in vitro data

Yujie He (3068052)
Lot Witte (6708743)
Lotte Houtepen (5454887)
Danny Nispeling (6708746)
Zhida Xu (2023525)
Qiong Yu (446491)
Yaqin Yu (605430)
Elly Hol (805688)
RenĂŠ Kahn (6708749)
Marco Boks (3529895)

May 2019

Permutation analysis of DMRs. The file contains the results of the permutation analysis. (DOCX 14 kb

Additional file 2: of MeDEStrand: an improved method to infer genome-wide absolute methylation levels from DNA enrichment data

Jingting Xu (3134982)
Shimeng Liu (6112952)
Ping Yin (54021)
Serdar Bulun (6112955)
Yang Dai (36730)

December 2018

Table S1. Pearson correlation coefficient of bin methylation level for the positive and negative DNA...

Additional file 1: of Many obesity-associated SNPs strongly associate with DNA methylation changes at proximal promoters and enhancers

Sarah Voisin (695350)
Markus Almén (3432941)
Galina Zheleznyakova (625786)
Lina Lundberg (3557939)
Sanaz Zarei (3557936)
Sandra Castillo (218332)
Fia Eriksson (3557933)
Emil Nilsson (3557942)
Matthias Blüher (103713)
Yvonne Böttcher (103725)
Peter Kovacs (103720)
Janis Klovins (76934)
Mathias Rask-Andersen (446207)
Helgi Schiöth (3432935)

October 2015

Description of the 52 investigated SNPs. SNPs in bold are SNPs for which significant associations wi...

Additional file 2: of DNA methylation patterns in peripheral blood mononuclear cells from Holstein cattle with variable milk yield

Chad Dechow (5849663)
Wan-Sheng Liu (200939)

October 2018

Table S2. Chromosome, start nucleotide, end nucleotide, length, summit, tags, Log P, and fold enrich...

Additional file 1: of Decreased methylation in the SNAI2 and ADAM23 genes associated with de-differentiation and haematogenous dissemination in breast cancers

Lenka Kalinkova (5725769)
Iveta Zmetakova (5725772)
Bozena Smolkova (5725775)
Gabriel Minarik (2512540)
Tatiana Sedlackova (5725778)
Viera Horvathova Kajabova (5725781)
Zuzana Cierna (5725784)
Michal Mego (774807)
Ivana Fridrichova (5725787)

September 2018

DNA methylation levels in various types of samples from BC patients with different histological grad...

Additional file 2: of DNA methylation of the promoter region of bnip3 and bnip3l genes induced by metabolic programming

Vincent Veron (154657)
Lucie Marandel (3994841)
Jingwei Liu (525202)
Emilio VĂŠlez (5755055)
Olivier Lepais (464756)
StĂŠphane Panserat (3994844)
Sandrine Skiba (5755040)
Iban Seiliez (320251)

September 2018

Table S1. Formulation and proximate composition of diet used in hypoxia stimulus [14]. Table S2. For...

Additional file 1: of The clinical significance of FAM19A4 methylation in high-risk HPV-positive cervical samples for the detection of cervical (pre)cancer in Chinese women

Qiaowen Bu (6021281)
Sanfeng Wang (5845580)
Jian Ma (170138)
Xiangcheng Zhou (6021284)
Guiying Hu (466655)
Hua Deng (1335612)
Xiaoli Sun (140478)
Xiaoshan Hong (6021287)
Hengying Wu (6021290)
Liang Zhang (41392)
Xiping Luo (2591440)

November 2018

Amplification curve of FAM19A4 and ACTB genes in cervical cancer, normal peripheral blood DNA, and d...

Additional file 1 of A comprehensive analysis of 195 DNA methylomes reveals shared and cell-specific features of partially methylated domains

Abdulrahman Salhab (5802770)
Karl NordstrĂśm (5802773)
Gilles Gasparoni (646130)
Kathrin Kattler (5077079)
Peter Ebert (3530948)
Fidel Ramirez (590934)
Laura Arrigoni (3530966)
Fabian MĂźller (5802776)
Julia Polansky (24043)
Cristina Cadenas (304878)
Jan G.Hengstler (5802779)
Thomas Lengauer (14699)
Thomas Manke (43376)
JĂśrn Walter (5559962)

September 2018

List of samples. XLSX sheet with list of samples and the corresponding URLs and accession numbers of...

Additional file 3: of Genome-wide methylation is modified by caloric restriction in Daphnia magna

Jack Hearn (3243372)
Marianne Pearson (6440924)
Mark Blaxter (50235)
Philip Wilson (104007)
Tom Little (62832)

March 2019

Gene annotations for genes with overlapping significantly hypomethylated regions under caloric restr...

Additional file 1: of DNA methylation patterns in peripheral blood mononuclear cells from Holstein cattle with variable milk yield

Chad Dechow (5849663)
Wan-Sheng Liu (200939)

October 2018

Table S1. Chromosome, start nucleotide, end nucleotide, length, summit, tags, Log P, and fold enrich...

Additional file 2: Figure S1. of Population whole-genome bisulfite sequencing across two tissues highlights the environment as the principal source of human methylome variation

Stephan Busche (3465698)
Xiaojian Shao (3465695)
Maxime Caron (3465692)
Tony Kwan (232656)
Fiona Allum (3465704)
Warren Cheung (83908)
Bing Ge (42609)
Susan Westfall (392141)
Marie-Michelle Simon (3465701)
Amy Barrett (166784)
Jordana Bell (667256)
Mark McCarthy (157523)
Panos Deloukas (21564)
Mathieu Blanchette (5083)
Guillaume Bourque (123960)
Timothy Spector (348486)
Mark Lathrop (17971)
Tomi Pastinen (15737)
Elin Grundberg (116416)

December 2015

Number of detected CpG-sites per mean genome coverage. Figure S2. Overall CpG-site methylation level...

Additional file 5: Table S8. of The senescent methylome and its relationship with cancer, ageing and germline genetic variation in humans

Robert Lowe (724766)
Marita Overhoff (3566255)
Sreeram Ramagopalan (3253560)
James Garbe (3566252)
James Koh (3045738)
Martha Stampfer (279112)
David Beach (3566249)
Vardhman Rakyan (3191682)
Cleo Bishop (3566258)

September 2015

Table containing the P values for the difference in methylation between the EP cells and each of the...

Additional file 5 of Genetic impacts on DNA methylation help elucidate regulatory genomic processes

Sergio Villicaña (10732756)
Juan Castillo-Fernandez (3861310)
Eilis Hannon (812105)
Colette Christiansen (11419455)
Pei-Chien Tsai (169868)
Jane Maddock (4227451)
Diana Kuh (188923)
Matthew Suderman (228692)
Christine Power (448073)
Caroline Relton (3457379)
George Ploubidis (3067758)
Andrew Wong (256256)
Rebecca Hardy (188906)
Alissa Goodman (4535137)
Ken K. Ong (8136300)
Jordana T. Bell (9944351)

July 2023

Additional file 5: Tables S26–S27. Table S26. List of GWASs summary statistics used for the SMR. Tab...

Additional file 4: of Genome-wide methylation is modified by caloric restriction in Daphnia magna

Jack Hearn (3243372)
Marianne Pearson (6440924)
Mark Blaxter (50235)
Philip Wilson (104007)
Tom Little (62832)

March 2019

Gene annotations for genes with overlapping significantly hypermethylated regions under caloric rest...

Additional file 2: of DNA methylation changes related to nutritional deprivation: a genome-wide analysis of population and in vitro data

Abstract

Extracted data

Additional file 2: of DNA methylation changes related to nutritional deprivation: a genome-wide analysis of population and in vitro data

Abstract

Extracted data

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