Additional file 5: of Prediction of pathogenicity genes involved in adaptation to a lupin host in the fungal pathogens Botrytis cinerea and Sclerotinia sclerotiorum via comparative genomics

Additional file 4: of Gene regulation of Sclerotinia sclerotiorum during infection of Glycine max: on the road to pathogenesis

Nathaniel Westrick (6405161)
Ashish Ranjan (197885)
Sachin Jain (410120)
Craig Grau (6405164)
Damon Smith (647938)
Mehdi Kabbage (215361)

February 2019

Figure S1. Graph detailing select categories of genes that were upregulated either EARLY (Orange) or...

Additional file 3: of Application of whole genome re-sequencing data in the development of diagnostic DNA markers tightly linked to a disease-resistance locus for marker-assisted selection in lupin (Lupinus angustifolius)

Huaan Yang (416242)
Jianbo Jian (642712)
Xuan Li (137217)
Daniel Renshaw (3453722)
Jonathan Clements (3453719)
Mark Sweetingham (3453716)
Cong Tan (137680)
Chengdao Li (141200)

September 2015

Discovery of SNP markers and InDel markers, and identification of diagnostic markers for the R gene ...

Additional file 3: of Gene regulation of Sclerotinia sclerotiorum during infection of Glycine max: on the road to pathogenesis

Nathaniel Westrick (6405161)
Ashish Ranjan (197885)
Sachin Jain (410120)
Craig Grau (6405164)
Damon Smith (647938)
Mehdi Kabbage (215361)

February 2019

Table S3. Characterization and functional distribution of genes found to be differentially regulated...

Additional file 4: of Prediction of pathogenicity genes involved in adaptation to a lupin host in the fungal pathogens Botrytis cinerea and Sclerotinia sclerotiorum via comparative genomics

Mahsa Mousavi-Derazmahalleh (6524222)
Steven Chang (271406)
Geoff Thomas (5716226)
Mark Derbyshire (6712010)
Phillip Bayer (6712016)
David Edwards (5663)
Matthew Nelson (1902790)
William Erskine (1806280)
Francisco Lopez-Ruiz (6712022)
Jon Clements (614685)
James Hane (3539561)

May 2019

Information of genes associated with AT-rich regions identified in the lupin-infecting Botrytis cine...

Additional file 3: of Prediction of pathogenicity genes involved in adaptation to a lupin host in the fungal pathogens Botrytis cinerea and Sclerotinia sclerotiorum via comparative genomics

Mahsa Mousavi-Derazmahalleh (6524222)
Steven Chang (271406)
Geoff Thomas (5716226)
Mark Derbyshire (6712010)
Phillip Bayer (6712016)
David Edwards (5663)
Matthew Nelson (1902790)
William Erskine (1806280)
Francisco Lopez-Ruiz (6712022)
Jon Clements (614685)
James Hane (3539561)

May 2019

Comparison of the repeat contents of isolates of Botrytis cinerea and Sclerotinia sclerotiorum. (XLS...

Additional file 8: of Prediction of pathogenicity genes involved in adaptation to a lupin host in the fungal pathogens Botrytis cinerea and Sclerotinia sclerotiorum via comparative genomics

Mahsa Mousavi-Derazmahalleh (6524222)
Steven Chang (271406)
Geoff Thomas (5716226)
Mark Derbyshire (6712010)
Phillip Bayer (6712016)
David Edwards (5663)
Matthew Nelson (1902790)
William Erskine (1806280)
Francisco Lopez-Ruiz (6712022)
Jon Clements (614685)
James Hane (3539561)

May 2019

CAZyme profiles for lupin-infecting and reference isolates of Botrytis cinerea and Sclerotinia scler...

Additional file 2: of Prediction of pathogenicity genes involved in adaptation to a lupin host in the fungal pathogens Botrytis cinerea and Sclerotinia sclerotiorum via comparative genomics

Mahsa Mousavi-Derazmahalleh (6524222)
Steven Chang (271406)
Geoff Thomas (5716226)
Mark Derbyshire (6712010)
Phillip Bayer (6712016)
David Edwards (5663)
Matthew Nelson (1902790)
William Erskine (1806280)
Francisco Lopez-Ruiz (6712022)
Jon Clements (614685)
James Hane (3539561)

May 2019

Information supporting effector prediction, orthology, functional annotations, mutations and PAV acr...

Additional file 6: of Prediction of pathogenicity genes involved in adaptation to a lupin host in the fungal pathogens Botrytis cinerea and Sclerotinia sclerotiorum via comparative genomics

Mahsa Mousavi-Derazmahalleh (6524222)
Steven Chang (271406)
Geoff Thomas (5716226)
Mark Derbyshire (6712010)
Phillip Bayer (6712016)
David Edwards (5663)
Matthew Nelson (1902790)
William Erskine (1806280)
Francisco Lopez-Ruiz (6712022)
Jon Clements (614685)
James Hane (3539561)

May 2019

Summary of PAV regions spanning 3 or more genes in reference isolates of Botrytis cinerea and Sclero...

Additional file 7: of Prediction of pathogenicity genes involved in adaptation to a lupin host in the fungal pathogens Botrytis cinerea and Sclerotinia sclerotiorum via comparative genomics

Mahsa Mousavi-Derazmahalleh (6524222)
Steven Chang (271406)
Geoff Thomas (5716226)
Mark Derbyshire (6712010)
Phillip Bayer (6712016)
David Edwards (5663)
Matthew Nelson (1902790)
William Erskine (1806280)
Francisco Lopez-Ruiz (6712022)
Jon Clements (614685)
James Hane (3539561)

May 2019

Summary the relationship between repetitive sequences and PAV regions in reference isolates of Botry...

Additional file 10: of Prediction of pathogenicity genes involved in adaptation to a lupin host in the fungal pathogens Botrytis cinerea and Sclerotinia sclerotiorum via comparative genomics

Mahsa Mousavi-Derazmahalleh (6524222)
Steven Chang (271406)
Geoff Thomas (5716226)
Mark Derbyshire (6712010)
Phillip Bayer (6712016)
David Edwards (5663)
Matthew Nelson (1902790)
William Erskine (1806280)
Francisco Lopez-Ruiz (6712022)
Jon Clements (614685)
James Hane (3539561)

May 2019

List of fungal genome datasets used as evidence for alignments supporting in silico gene predictions...

Additional file 1: of Prediction of pathogenicity genes involved in adaptation to a lupin host in the fungal pathogens Botrytis cinerea and Sclerotinia sclerotiorum via comparative genomics

Mahsa Mousavi-Derazmahalleh (6524222)
Steven Chang (271406)
Geoff Thomas (5716226)
Mark Derbyshire (6712010)
Phillip Bayer (6712016)
David Edwards (5663)
Matthew Nelson (1902790)
William Erskine (1806280)
Francisco Lopez-Ruiz (6712022)
Jon Clements (614685)
James Hane (3539561)

May 2019

Statistically significant overâ/under-representation of pfam functional annotations between pathog...

Additional file 9: of Prediction of pathogenicity genes involved in adaptation to a lupin host in the fungal pathogens Botrytis cinerea and Sclerotinia sclerotiorum via comparative genomics

Mahsa Mousavi-Derazmahalleh (6524222)
Steven Chang (271406)
Geoff Thomas (5716226)
Mark Derbyshire (6712010)
Phillip Bayer (6712016)
David Edwards (5663)
Matthew Nelson (1902790)
William Erskine (1806280)
Francisco Lopez-Ruiz (6712022)
Jon Clements (614685)
James Hane (3539561)

May 2019

Flow diagram of procedure used to exclude sequences from final assemblies due quality or contaminati...

Additional file 5: of Gene regulation of Sclerotinia sclerotiorum during infection of Glycine max: on the road to pathogenesis

Nathaniel Westrick (6405161)
Ashish Ranjan (197885)
Sachin Jain (410120)
Craig Grau (6405164)
Damon Smith (647938)
Mehdi Kabbage (215361)

February 2019

Table S4. All genes found to be differentially expressed over the course of infection (FDR<0.05) whi...

Additional file 5: of Secondary metabolite gene clusters in the entomopathogen fungus Metarhizium anisopliae: genome identification and patterns of expression in a cuticle infection model

Nicolau Sbaraini (631252)
Rafael Guedes (3475223)
FĂĄbio Andreis (3475253)
Ăngela Junges (3475256)
Guilherme de Morais (3475232)
Marilene Vainstein (3475226)
Ana de Vasconcelos (3475220)
Augusto Schrank (141891)

October 2016

Amino acid alignment for the tropolone/citrinin-related backbone gene and related orthologs. (FASTA ...

Additional file 6: of Comparative genomics of plant pathogenic Botrytis species with distinct host specificity

Claudio Valero-JimĂŠnez (3517739)
Javier Veloso (6456413)
Martijn Staats (139441)
Jan Kan (6456416)

March 2019

Summary of the presence/absence of all described secondary metabolites key enzymes of Botrytis ciner...

Additional file 4: of Gene regulation of Sclerotinia sclerotiorum during infection of Glycine max: on the road to pathogenesis

Nathaniel Westrick (6405161)
Ashish Ranjan (197885)
Sachin Jain (410120)
Craig Grau (6405164)
Damon Smith (647938)
Mehdi Kabbage (215361)

February 2019

Figure S1. Graph detailing select categories of genes that were upregulated either EARLY (Orange) or...

Additional file 3: of Application of whole genome re-sequencing data in the development of diagnostic DNA markers tightly linked to a disease-resistance locus for marker-assisted selection in lupin (Lupinus angustifolius)

Huaan Yang (416242)
Jianbo Jian (642712)
Xuan Li (137217)
Daniel Renshaw (3453722)
Jonathan Clements (3453719)
Mark Sweetingham (3453716)
Cong Tan (137680)
Chengdao Li (141200)

September 2015

Discovery of SNP markers and InDel markers, and identification of diagnostic markers for the R gene ...

Additional file 3: of Gene regulation of Sclerotinia sclerotiorum during infection of Glycine max: on the road to pathogenesis

Nathaniel Westrick (6405161)
Ashish Ranjan (197885)
Sachin Jain (410120)
Craig Grau (6405164)
Damon Smith (647938)
Mehdi Kabbage (215361)

February 2019

Table S3. Characterization and functional distribution of genes found to be differentially regulated...

Additional file 4: of Prediction of pathogenicity genes involved in adaptation to a lupin host in the fungal pathogens Botrytis cinerea and Sclerotinia sclerotiorum via comparative genomics

Mahsa Mousavi-Derazmahalleh (6524222)
Steven Chang (271406)
Geoff Thomas (5716226)
Mark Derbyshire (6712010)
Phillip Bayer (6712016)
David Edwards (5663)
Matthew Nelson (1902790)
William Erskine (1806280)
Francisco Lopez-Ruiz (6712022)
Jon Clements (614685)
James Hane (3539561)

May 2019

Information of genes associated with AT-rich regions identified in the lupin-infecting Botrytis cine...

Additional file 3: of Prediction of pathogenicity genes involved in adaptation to a lupin host in the fungal pathogens Botrytis cinerea and Sclerotinia sclerotiorum via comparative genomics

Mahsa Mousavi-Derazmahalleh (6524222)
Steven Chang (271406)
Geoff Thomas (5716226)
Mark Derbyshire (6712010)
Phillip Bayer (6712016)
David Edwards (5663)
Matthew Nelson (1902790)
William Erskine (1806280)
Francisco Lopez-Ruiz (6712022)
Jon Clements (614685)
James Hane (3539561)

May 2019

Comparison of the repeat contents of isolates of Botrytis cinerea and Sclerotinia sclerotiorum. (XLS...

Additional file 8: of Prediction of pathogenicity genes involved in adaptation to a lupin host in the fungal pathogens Botrytis cinerea and Sclerotinia sclerotiorum via comparative genomics

Mahsa Mousavi-Derazmahalleh (6524222)
Steven Chang (271406)
Geoff Thomas (5716226)
Mark Derbyshire (6712010)
Phillip Bayer (6712016)
David Edwards (5663)
Matthew Nelson (1902790)
William Erskine (1806280)
Francisco Lopez-Ruiz (6712022)
Jon Clements (614685)
James Hane (3539561)

May 2019

CAZyme profiles for lupin-infecting and reference isolates of Botrytis cinerea and Sclerotinia scler...

Additional file 2: of Prediction of pathogenicity genes involved in adaptation to a lupin host in the fungal pathogens Botrytis cinerea and Sclerotinia sclerotiorum via comparative genomics

Mahsa Mousavi-Derazmahalleh (6524222)
Steven Chang (271406)
Geoff Thomas (5716226)
Mark Derbyshire (6712010)
Phillip Bayer (6712016)
David Edwards (5663)
Matthew Nelson (1902790)
William Erskine (1806280)
Francisco Lopez-Ruiz (6712022)
Jon Clements (614685)
James Hane (3539561)

May 2019

Information supporting effector prediction, orthology, functional annotations, mutations and PAV acr...

Additional file 6: of Prediction of pathogenicity genes involved in adaptation to a lupin host in the fungal pathogens Botrytis cinerea and Sclerotinia sclerotiorum via comparative genomics

Mahsa Mousavi-Derazmahalleh (6524222)
Steven Chang (271406)
Geoff Thomas (5716226)
Mark Derbyshire (6712010)
Phillip Bayer (6712016)
David Edwards (5663)
Matthew Nelson (1902790)
William Erskine (1806280)
Francisco Lopez-Ruiz (6712022)
Jon Clements (614685)
James Hane (3539561)

May 2019

Summary of PAV regions spanning 3 or more genes in reference isolates of Botrytis cinerea and Sclero...

Additional file 7: of Prediction of pathogenicity genes involved in adaptation to a lupin host in the fungal pathogens Botrytis cinerea and Sclerotinia sclerotiorum via comparative genomics

Mahsa Mousavi-Derazmahalleh (6524222)
Steven Chang (271406)
Geoff Thomas (5716226)
Mark Derbyshire (6712010)
Phillip Bayer (6712016)
David Edwards (5663)
Matthew Nelson (1902790)
William Erskine (1806280)
Francisco Lopez-Ruiz (6712022)
Jon Clements (614685)
James Hane (3539561)

May 2019

Summary the relationship between repetitive sequences and PAV regions in reference isolates of Botry...

Additional file 10: of Prediction of pathogenicity genes involved in adaptation to a lupin host in the fungal pathogens Botrytis cinerea and Sclerotinia sclerotiorum via comparative genomics

Mahsa Mousavi-Derazmahalleh (6524222)
Steven Chang (271406)
Geoff Thomas (5716226)
Mark Derbyshire (6712010)
Phillip Bayer (6712016)
David Edwards (5663)
Matthew Nelson (1902790)
William Erskine (1806280)
Francisco Lopez-Ruiz (6712022)
Jon Clements (614685)
James Hane (3539561)

May 2019

List of fungal genome datasets used as evidence for alignments supporting in silico gene predictions...

Additional file 1: of Prediction of pathogenicity genes involved in adaptation to a lupin host in the fungal pathogens Botrytis cinerea and Sclerotinia sclerotiorum via comparative genomics

Mahsa Mousavi-Derazmahalleh (6524222)
Steven Chang (271406)
Geoff Thomas (5716226)
Mark Derbyshire (6712010)
Phillip Bayer (6712016)
David Edwards (5663)
Matthew Nelson (1902790)
William Erskine (1806280)
Francisco Lopez-Ruiz (6712022)
Jon Clements (614685)
James Hane (3539561)

May 2019

Statistically significant overâ/under-representation of pfam functional annotations between pathog...

Additional file 9: of Prediction of pathogenicity genes involved in adaptation to a lupin host in the fungal pathogens Botrytis cinerea and Sclerotinia sclerotiorum via comparative genomics

Mahsa Mousavi-Derazmahalleh (6524222)
Steven Chang (271406)
Geoff Thomas (5716226)
Mark Derbyshire (6712010)
Phillip Bayer (6712016)
David Edwards (5663)
Matthew Nelson (1902790)
William Erskine (1806280)
Francisco Lopez-Ruiz (6712022)
Jon Clements (614685)
James Hane (3539561)

May 2019

Flow diagram of procedure used to exclude sequences from final assemblies due quality or contaminati...

Additional file 5: of Gene regulation of Sclerotinia sclerotiorum during infection of Glycine max: on the road to pathogenesis

Nathaniel Westrick (6405161)
Ashish Ranjan (197885)
Sachin Jain (410120)
Craig Grau (6405164)
Damon Smith (647938)
Mehdi Kabbage (215361)

February 2019

Table S4. All genes found to be differentially expressed over the course of infection (FDR<0.05) whi...

Additional file 5: of Secondary metabolite gene clusters in the entomopathogen fungus Metarhizium anisopliae: genome identification and patterns of expression in a cuticle infection model

Nicolau Sbaraini (631252)
Rafael Guedes (3475223)
FĂĄbio Andreis (3475253)
Ăngela Junges (3475256)
Guilherme de Morais (3475232)
Marilene Vainstein (3475226)
Ana de Vasconcelos (3475220)
Augusto Schrank (141891)

October 2016

Amino acid alignment for the tropolone/citrinin-related backbone gene and related orthologs. (FASTA ...

Additional file 6: of Comparative genomics of plant pathogenic Botrytis species with distinct host specificity

Claudio Valero-JimĂŠnez (3517739)
Javier Veloso (6456413)
Martijn Staats (139441)
Jan Kan (6456416)

March 2019

Summary of the presence/absence of all described secondary metabolites key enzymes of Botrytis ciner...

Additional file 4: of Gene regulation of Sclerotinia sclerotiorum during infection of Glycine max: on the road to pathogenesis

Nathaniel Westrick (6405161)
Ashish Ranjan (197885)
Sachin Jain (410120)
Craig Grau (6405164)
Damon Smith (647938)
Mehdi Kabbage (215361)

February 2019

Figure S1. Graph detailing select categories of genes that were upregulated either EARLY (Orange) or...

Additional file 3: of Application of whole genome re-sequencing data in the development of diagnostic DNA markers tightly linked to a disease-resistance locus for marker-assisted selection in lupin (Lupinus angustifolius)

Huaan Yang (416242)
Jianbo Jian (642712)
Xuan Li (137217)
Daniel Renshaw (3453722)
Jonathan Clements (3453719)
Mark Sweetingham (3453716)
Cong Tan (137680)
Chengdao Li (141200)

September 2015

Discovery of SNP markers and InDel markers, and identification of diagnostic markers for the R gene ...

Additional file 3: of Gene regulation of Sclerotinia sclerotiorum during infection of Glycine max: on the road to pathogenesis

Nathaniel Westrick (6405161)
Ashish Ranjan (197885)
Sachin Jain (410120)
Craig Grau (6405164)
Damon Smith (647938)
Mehdi Kabbage (215361)

February 2019

Table S3. Characterization and functional distribution of genes found to be differentially regulated...

Additional file 5: of Prediction of pathogenicity genes involved in adaptation to a lupin host in the fungal pathogens Botrytis cinerea and Sclerotinia sclerotiorum via comparative genomics

Abstract

Extracted data

Additional file 5: of Prediction of pathogenicity genes involved in adaptation to a lupin host in the fungal pathogens Botrytis cinerea and Sclerotinia sclerotiorum via comparative genomics

Abstract

Extracted data

Related items

Related items