Supplementary Methods. Further details of the genome-wide survey and cross-genome comparison methods have been presented in this file (DOCX 21 kb
Competition co-culture of CD-E. coli and isolates from healthy individuals. (DOC 56Â kb
Figure S1. Number of orthology pairwise relationships calculated with OrthoMCL, ProteinPathTracker a...
Genomes used for phylogenetic and Escherichia coli protein database construction (DOC 86 kb
Table S1v List of hypothetical proteins from E. coli proteomes that were annotated as RNA binding pr...
Strains used for the comparative analysis. (A) Strains used for the phylogenetic analysis. Character...
A list of Caf1-CCR4-NOT complex genes identified by searching against human PPI database. The intera...
Document S1. PCR and sequencing results to demonstrate the existence of a novel transcript which was...
Table S1. Bacterial strains with their corresponding accession numbers used in the study. (DOCX 29 k...
Supplementary text. This file includes descriptions of additional named motifs and select high ranki...
This file contains the list of UniProt codes for non-redundant DNA-binding protein sets from UniProt...
Table S1. List of E. coli strains whose genomes have been used. Table S2. Distribution of genes from...
Distribution of EPDR genes in Eukaryota. Results of EPDR survey by species, including total number o...
Table S3. Chromosomal location of genomic islands (GI) in NADC 6564 and corresponding homologs in tw...
Supplementary Data. The excel document contains the Supplementary Data about the performances of dif...
Table S2. Sequence length and location of chromosomal regions in two reference strains exhibiting ho...
Competition co-culture of CD-E. coli and isolates from healthy individuals. (DOC 56Â kb
Figure S1. Number of orthology pairwise relationships calculated with OrthoMCL, ProteinPathTracker a...
Genomes used for phylogenetic and Escherichia coli protein database construction (DOC 86 kb
Table S1v List of hypothetical proteins from E. coli proteomes that were annotated as RNA binding pr...
Strains used for the comparative analysis. (A) Strains used for the phylogenetic analysis. Character...
A list of Caf1-CCR4-NOT complex genes identified by searching against human PPI database. The intera...
Document S1. PCR and sequencing results to demonstrate the existence of a novel transcript which was...
Table S1. Bacterial strains with their corresponding accession numbers used in the study. (DOCX 29 k...
Supplementary text. This file includes descriptions of additional named motifs and select high ranki...
This file contains the list of UniProt codes for non-redundant DNA-binding protein sets from UniProt...
Table S1. List of E. coli strains whose genomes have been used. Table S2. Distribution of genes from...
Distribution of EPDR genes in Eukaryota. Results of EPDR survey by species, including total number o...
Table S3. Chromosomal location of genomic islands (GI) in NADC 6564 and corresponding homologs in tw...
Supplementary Data. The excel document contains the Supplementary Data about the performances of dif...
Table S2. Sequence length and location of chromosomal regions in two reference strains exhibiting ho...
Competition co-culture of CD-E. coli and isolates from healthy individuals. (DOC 56Â kb
Figure S1. Number of orthology pairwise relationships calculated with OrthoMCL, ProteinPathTracker a...
Genomes used for phylogenetic and Escherichia coli protein database construction (DOC 86 kb
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