Additional file 1 of Identification of candidate genes related to salt tolerance of the secretohalophyte Atriplex canescens by transcriptomic analysis

: Figure S1. Length distribution of all assembled unigenes. Figure S2. COG function distribution of all unigenes. A total of 26,012 putative proteins showing significant homology to those in the COG database were classified into 25 functional clusters. X-axis indicates the number of unigenes in a cluster. Figure S3. GO function distribution of all unigenes. A total of 37,395 unigenes were assigned to GO terms and were summarized in 3 main GO categories and 52 subcategories. X-axis indicates the number of genes in a category. Figure S4. Correlation analysis for expression pattern validation of 30 randomly selected DEGs between RNA-Seq and qRT-PCR results. Table S1. Summary of sequencing reads after filtering. Table S2. Summary of sequence annotation. Table S3. Differentially expressed genes (DEGs) related to ion transport in leaves of A. canescens under 100 mM NaCl for 6 h. Table S4. DEGs related to ion transport in leaves of A. canescens under 100 mM NaCl for 24 h. Table S5. DEGs related to ion transport in roots of A. canescens under 100 mM NaCl for 6 h. Table S6. DEGs related to ion transport in roots of A. canescens under 100 mM NaCl for 24 h. Table S7. DEGs related to organic osmolytes synthesis in leaves of A. canescens under 100 mM NaCl for 6 h. Table S8. DEGs related to organic osmolytes synthesis in leaves of A. canescens under 100 mM NaCl for 24 h. Table S9. DEGs related to photosynthesis in leaves of A. canescens under 100 mM NaCl for 6 h. Table S10. DEGs related to photosynthesis in leaves of A. canescens under 100 mM NaCl for 24 h. Table S11. Expression pattern validation of 30 randomly selected genes in leaves of A. canescens under 100 mM NaCl for 6 and 24 h by qRT-PCR. Table S12. Expression pattern validation of 30 randomly selected genes in roots of A. canescens under 100 mM NaCl for 6 and 24 h by qRT-PCR. (DOCX 1081 kb