A new version of the grapevine reference genome assembly (12X.v2) and of its annotation (VCost.v3)

Chromosome-scale haplotype genome sequence assemblies of ‘Börner’ and corresponding genome sequence annotations

Frommer, Bianca
Weisshaar, Bernd
Holtgräwe, Daniela

January 2022

Frommer B, Weisshaar B, Holtgräwe D. Chromosome-scale haplotype genome sequence assemblies of ‘Börne...

Comparison of three assembly strategies for a heterozygous seedless grapevine genome assembly

Sagar Patel
Zhixiu Lu
Xiaozhu Jin
Padmapriya Swaminathan
Erliang Zeng
Anne Y. Fennell

January 2018

Abstract Background De novo heterozygous assembly is an ongoing challenge requiring improved assembl...

The grapevine gene nomenclature system

Grimplet, Jérôme
Adam-Blondon, Anne-Francoise
Bert, Pierre-François
Bitz, Olivier
Cantu, Dario
Davies, Christopher
Delrot, Serge
Pezzotti, Mario
Rombauts, Stéphane
Cramer, Grant R

January 2014

Background Grapevine (Vitis vinifera L.) is one of the most important fruit crops in the world and s...

A new version of the grapevine reference genome assembly (12X.v2) and of its annotation (VCost.v3)

Canaguier, Aurelie
Grimplet, Jérome
Di Gaspero, Gabriele
Scalabrin, Simone
Duchêne, Eric
Choisne, Nathalie
Mohellibi, Nacer
Guichard, Cécile
Rombauts, Stéphane
Le Clainche, Isabelle
Berard, Aurélie
Chauveau, Aurelie
Bounon, Rémi
Rustenholz, Camille
Morgante, Michele
Le Paslier, Marie-Christine
Brunel, Dominique
Adam-Blondon, Anne-Françoise

December 2017

A new version of the grapevine reference genome assembly (12X.v2) and of its annotation (VCost.v3

Grapevine genome update and beyond

Adam-Blondon, Anne-Francoise

August 2010

International audienceThe grapevine is the fourth flowering plant whose genome sequence has been mad...

An improved reference of the grapevine genome supports reasserting the origin of the PN40024 highly-homozygous genotype

Velt, Amandine
Frommer, Bianca
Blanc, Sophie
Holtgräwe, Daniela
Duchêne, Éric
Dumas, Vincent
Grimplet, Jérôme
Hugueney, Philippe
Lahaye, Marie
Kim, Catherine
Matus, José Tomás
Navarro-Payá, David
Orduña, Luis
Tello-Ruiz, Marcela K.
Vitulo, Nicola
Ware, Doreen
Rustenholz, Camille

January 2022

Velt A, Frommer B, Blanc S, et al. An improved reference of the grapevine genome supports reassertin...

Toward the Improvement of the Gene Centered Information in Grapevine Genomics

Adam-Blondon, Anne-Françoise
Grimplet, Jérôme
Bert, Pierre-François
Bitz, Oliver
Cramer, Grant
Davies, Christopher
Delrot, Serge
Pezzotti, Mario
Rombauts, Stéphane

March 2017

Trabajo presentado en la Plant and Animal Genome XXII Conference, celebrada en San Diego del 11 al ...

De novo phased assembly of the Vitis riparia grape genome

Girollet, Nabil
Rubio, Bernadette
Bert, Pierre-François

January 2019

Grapevine is one of the most important fruit species in the world. In order to better understand gen...

Phase-separated genome sequence assembly of the grapevine cultivar Gf.99-03 and its annotation

Frommer, Bianca
Müllner, Sophia
Weisshaar, Bernd
Holtgräwe, Daniela

January 2022

Frommer B, Müllner S, Weisshaar B, Holtgräwe D. Phase-separated genome sequence assembly of the grap...

Annotation of the grapevine genome

Grimplet, Jérôme

March 2017

Trabajo presentado en la 5th Grape Research Coordination Network Conference (GRCN 2013), celebrada e...

An improved reference of the grapevine genome reasserts the origin of the PN40024 highly-homozygous genotype

Velt, Amandine
Frommer, Bianca
Blanc, Sophie
Holtgräwe, Daniela
Duchêne, Éric
Dumas, Vincent
Grimplet, Jérôme
Hugueney, Philippe
Kim, Catherine
Lahaye, Marie
Tomás Matus, José
Navarro-Payá, David
Orduña, Luis
Tello-Ruiz, Marcela K
Vitulo, Nicola
Ware, Doreen
Rustenholz, Camille

March 2023

The genome sequence of the diploid and highly homozygous V. vinifera genotype PN40024 serves as the ...

An improved reference of the grapevine genome reasserts the origin of the PN40024 highly homozygous genotype

Velt, Amandine
Frommer, Bianca
Blanc, Sophie
Holtgräwe, Daniela
Duchêne, Éric
Dumas, Vincent
Grimplet, Jérôme
Hugueney, Philippe
Kim, Catherine
Lahaye, Marie
Matus, José Tomás
Navarro-Payá, David
Orduña, Luis
Tello-Ruiz, Marcela K
Vitulo, Nicola
Ware, Doreen
Rustenholz, Camille

May 2023

The genome sequence of the diploid and highly homozygous Vitis vinifera genotype PN40024 serves as t...

The complete reference genome for grapevine (Vitis vinifera L.) genetics and breeding

Shi, Xiaoya
Cao, Shuo
Wang, Xu
Huang, Siyang
Wang, Yue
Liu, Zhongjie
Liu, Wenwen
Leng, Xiangpeng
Peng, Yanling
Wang, Nan
Wang, Yiwen
Ma, Zhiyao
Xu, Xiaodong
Zhang, Fan
Xue, Hui
Zhong, Haixia
Wang, Yi
Zhang, Kekun
Velt, Amandine
Avia, Komlan
Holtgräwe, Daniela
Grimplet, Jérôme
Matus, José Tomás
Ware, Doreen
Wu, Xinyu
Wang, Haibo
Liu, Chonghuai
Fang, Yuling
Rustenholz, Camille
Cheng, Zongming
Xiao, Hua
Zhou, Yongfeng

January 2023

Shi X, Cao S, Wang X, et al. The complete reference genome for grapevine (Vitis vinifera L.) genetic...

Comparison of Three Assembly Strategies for a Heterozygous Grapevine Genome Assembly

Patel, Sagar
Zeng, Erliang
Lu, Zhixiu
Jin, Xiaozhu
Swaminathan, Padmapriya
Fennell, Anne

January 2018

Each folder includes the following files. Assembly.fa: Genome assembly in scaffolds. Blast2GO_resu...

Genome sequence initiatives

Jaillon, Olivier
Vezzulli, Silvia
Zharkikh, Andrey
Troggio, Michela
Velasco, Riccardo

January 2011

The possibility to access a complete genome sequence allows the development of new resources for hig...

Chromosome-scale haplotype genome sequence assemblies of ‘Börner’ and corresponding genome sequence annotations

Frommer, Bianca
Weisshaar, Bernd
Holtgräwe, Daniela

January 2022

Frommer B, Weisshaar B, Holtgräwe D. Chromosome-scale haplotype genome sequence assemblies of ‘Börne...

Comparison of three assembly strategies for a heterozygous seedless grapevine genome assembly

Sagar Patel
Zhixiu Lu
Xiaozhu Jin
Padmapriya Swaminathan
Erliang Zeng
Anne Y. Fennell

January 2018

Abstract Background De novo heterozygous assembly is an ongoing challenge requiring improved assembl...

The grapevine gene nomenclature system

Grimplet, Jérôme
Adam-Blondon, Anne-Francoise
Bert, Pierre-François
Bitz, Olivier
Cantu, Dario
Davies, Christopher
Delrot, Serge
Pezzotti, Mario
Rombauts, Stéphane
Cramer, Grant R

January 2014

Background Grapevine (Vitis vinifera L.) is one of the most important fruit crops in the world and s...

A new version of the grapevine reference genome assembly (12X.v2) and of its annotation (VCost.v3)

Canaguier, Aurelie
Grimplet, Jérome
Di Gaspero, Gabriele
Scalabrin, Simone
Duchêne, Eric
Choisne, Nathalie
Mohellibi, Nacer
Guichard, Cécile
Rombauts, Stéphane
Le Clainche, Isabelle
Berard, Aurélie
Chauveau, Aurelie
Bounon, Rémi
Rustenholz, Camille
Morgante, Michele
Le Paslier, Marie-Christine
Brunel, Dominique
Adam-Blondon, Anne-Françoise

December 2017

A new version of the grapevine reference genome assembly (12X.v2) and of its annotation (VCost.v3

Grapevine genome update and beyond

Adam-Blondon, Anne-Francoise

August 2010

International audienceThe grapevine is the fourth flowering plant whose genome sequence has been mad...

An improved reference of the grapevine genome supports reasserting the origin of the PN40024 highly-homozygous genotype

Velt, Amandine
Frommer, Bianca
Blanc, Sophie
Holtgräwe, Daniela
Duchêne, Éric
Dumas, Vincent
Grimplet, Jérôme
Hugueney, Philippe
Lahaye, Marie
Kim, Catherine
Matus, José Tomás
Navarro-Payá, David
Orduña, Luis
Tello-Ruiz, Marcela K.
Vitulo, Nicola
Ware, Doreen
Rustenholz, Camille

January 2022

Velt A, Frommer B, Blanc S, et al. An improved reference of the grapevine genome supports reassertin...

Toward the Improvement of the Gene Centered Information in Grapevine Genomics

Adam-Blondon, Anne-Françoise
Grimplet, Jérôme
Bert, Pierre-François
Bitz, Oliver
Cramer, Grant
Davies, Christopher
Delrot, Serge
Pezzotti, Mario
Rombauts, Stéphane

March 2017

Trabajo presentado en la Plant and Animal Genome XXII Conference, celebrada en San Diego del 11 al ...

De novo phased assembly of the Vitis riparia grape genome

Girollet, Nabil
Rubio, Bernadette
Bert, Pierre-François

January 2019

Grapevine is one of the most important fruit species in the world. In order to better understand gen...

Phase-separated genome sequence assembly of the grapevine cultivar Gf.99-03 and its annotation

Frommer, Bianca
Müllner, Sophia
Weisshaar, Bernd
Holtgräwe, Daniela

January 2022

Frommer B, Müllner S, Weisshaar B, Holtgräwe D. Phase-separated genome sequence assembly of the grap...

Annotation of the grapevine genome

Grimplet, Jérôme

March 2017

Trabajo presentado en la 5th Grape Research Coordination Network Conference (GRCN 2013), celebrada e...

An improved reference of the grapevine genome reasserts the origin of the PN40024 highly-homozygous genotype

Velt, Amandine
Frommer, Bianca
Blanc, Sophie
Holtgräwe, Daniela
Duchêne, Éric
Dumas, Vincent
Grimplet, Jérôme
Hugueney, Philippe
Kim, Catherine
Lahaye, Marie
Tomás Matus, José
Navarro-Payá, David
Orduña, Luis
Tello-Ruiz, Marcela K
Vitulo, Nicola
Ware, Doreen
Rustenholz, Camille

March 2023

The genome sequence of the diploid and highly homozygous V. vinifera genotype PN40024 serves as the ...

An improved reference of the grapevine genome reasserts the origin of the PN40024 highly homozygous genotype

Velt, Amandine
Frommer, Bianca
Blanc, Sophie
Holtgräwe, Daniela
Duchêne, Éric
Dumas, Vincent
Grimplet, Jérôme
Hugueney, Philippe
Kim, Catherine
Lahaye, Marie
Matus, José Tomás
Navarro-Payá, David
Orduña, Luis
Tello-Ruiz, Marcela K
Vitulo, Nicola
Ware, Doreen
Rustenholz, Camille

May 2023

The genome sequence of the diploid and highly homozygous Vitis vinifera genotype PN40024 serves as t...

The complete reference genome for grapevine (Vitis vinifera L.) genetics and breeding

Shi, Xiaoya
Cao, Shuo
Wang, Xu
Huang, Siyang
Wang, Yue
Liu, Zhongjie
Liu, Wenwen
Leng, Xiangpeng
Peng, Yanling
Wang, Nan
Wang, Yiwen
Ma, Zhiyao
Xu, Xiaodong
Zhang, Fan
Xue, Hui
Zhong, Haixia
Wang, Yi
Zhang, Kekun
Velt, Amandine
Avia, Komlan
Holtgräwe, Daniela
Grimplet, Jérôme
Matus, José Tomás
Ware, Doreen
Wu, Xinyu
Wang, Haibo
Liu, Chonghuai
Fang, Yuling
Rustenholz, Camille
Cheng, Zongming
Xiao, Hua
Zhou, Yongfeng

January 2023

Shi X, Cao S, Wang X, et al. The complete reference genome for grapevine (Vitis vinifera L.) genetic...

Comparison of Three Assembly Strategies for a Heterozygous Grapevine Genome Assembly

Patel, Sagar
Zeng, Erliang
Lu, Zhixiu
Jin, Xiaozhu
Swaminathan, Padmapriya
Fennell, Anne

January 2018

Each folder includes the following files. Assembly.fa: Genome assembly in scaffolds. Blast2GO_resu...

Genome sequence initiatives

Jaillon, Olivier
Vezzulli, Silvia
Zharkikh, Andrey
Troggio, Michela
Velasco, Riccardo

January 2011

The possibility to access a complete genome sequence allows the development of new resources for hig...

Chromosome-scale haplotype genome sequence assemblies of ‘Börner’ and corresponding genome sequence annotations

Frommer, Bianca
Weisshaar, Bernd
Holtgräwe, Daniela

January 2022

Frommer B, Weisshaar B, Holtgräwe D. Chromosome-scale haplotype genome sequence assemblies of ‘Börne...

Comparison of three assembly strategies for a heterozygous seedless grapevine genome assembly

Sagar Patel
Zhixiu Lu
Xiaozhu Jin
Padmapriya Swaminathan
Erliang Zeng
Anne Y. Fennell

January 2018

Abstract Background De novo heterozygous assembly is an ongoing challenge requiring improved assembl...

The grapevine gene nomenclature system

Grimplet, Jérôme
Adam-Blondon, Anne-Francoise
Bert, Pierre-François
Bitz, Olivier
Cantu, Dario
Davies, Christopher
Delrot, Serge
Pezzotti, Mario
Rombauts, Stéphane
Cramer, Grant R

January 2014

Background Grapevine (Vitis vinifera L.) is one of the most important fruit crops in the world and s...

A new version of the grapevine reference genome assembly (12X.v2) and of its annotation (VCost.v3)

Abstract

Extracted data

A new version of the grapevine reference genome assembly (12X.v2) and of its annotation (VCost.v3)

Abstract

Extracted data

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