Phaistos was one of the most important Minoan palaces in Crete and previous studies have addressed its relationship with the paleo-seashore position during historical times. Here, we reconstruct the environmental evolution of Phaistos from Early Minoan to Roman times. Study of two stratigraphic sections and nine boreholes drilled in the westernmost part of the Messara Plain has revealed the stratigraphy of the Mid- to Late-Holocene sediments. Laboratory analyses comprise granulometry, magnetic susceptibility measurements and identification of mollusks, diatoms and pollen grains. Eighteen radiocarbon dates provide a robust chronostratigraphy. In addition, a geophysical survey (electric resistivity tomography (ERT) method) was conducted ...