A new generation of crystallographic validation tools for the protein data bank

Protein Data Bank: The single global archive for 3D macromolecular structure data

Burley S. K.
Berman H. M.
Bhikadiya C.
Bi C.
Chen L.
Di Costanzo Luigi
ADDEO, PIETRO FRANCESCO BRUNO CHRISTI
Duarte J. M.
Dutta S.
Feng Z.
Ghosh S.
Goodsell D. S.
Green R. K.
Guranovic V.
Guzenko D.
Hudson B. P.
Liang Y.
Lowe R.
Peisach E.
Periskova I.
Randle C.
Rose A.
Sekharan M.
Shao C.
Tao Y. -P.
Valasatava Y.
Voigt M.
Westbrook J.
Young J.
Zardecki C.
Zhuravleva M.
Kurisu G.
Nakamura H.
Kengaku Y.
Cho H.
Sato J.
Kim J. Y.
Ikegawa Y.
Nakagawa A.
Yamashita R.
Kudou T.
Bekker G. -J.
Suzuki H.
Iwata T.
Yokochi M.
Kobayashi N.
Fujiwara T.
Velankar S.
Kleywegt G. J.
Anyango S.
Armstrong D. R.
Berrisford J. M.
Conroy M. J.
Dana J. M.
Deshpande M.
Gane P.
Gaborova R.
Gupta D.
Gutmanas A.
Koca J.
Mak L.
EL MIR, ABDELOUAHAD
Mukhopadhyay A.
Nadzirin N.
Nair S.
Patwardhan A.
Paysan-Lafosse T.
Pravda L.
Salih O.
Sehnal D.
Varadi M.
Varekova R.
Markley J. L.
Hoch J. C.
Romero P. R.
Baskaran K.
Maziuk D.
Ulrich E. L.
Wedell J. R.
Sicong, Yao
Livny M.
Ioannidis Y. E.

January 2019

The Protein Data Bank (PDB) is the single global archive of experimentally determined three-dimensio...

Validation of protein structures derived by NMR spectroscopy

Spronk, C.A.E.M.
Nabuurs, S.B.
Krieger, E.
Vriend, G.
Vuister, G.W.

January 2004

Contains fulltext : 59100.pdf (publisher's version ) (Closed access

The Protein Data Bank: Current Status and Future Challenges

Joel L. Sussman
Enrique E. Abola
Nancy O. Manning
Jaime Prilusky

November 2007

The Protein Data Bank (PDB) is an archive of experimentally determined, three-dimensional structures...

A New Generation of Crystallographic Validation Tools for the Protein Data Bank

Read, Randy J.
Adams, Paul D.
Arendall, W. Bryan
Brunger, Axel T.
Emsley, Paul
Joosten, Robbie P.
Kleywegt, Gerard J.
Krissinel, Eugene B.
Lütteke, Thomas
Otwinowski, Zbyszek
Perrakis, Anastassis
Richardson, Jane S.
Sheffler, William H.
Smith, Janet L.
Tickle, Ian J.
Vriend, Gert
Zwart, Peter H.

October 2011

SummaryThis report presents the conclusions of the X-ray Validation Task Force of the worldwide Prot...

A new generation of crystallographic validation tools for the protein data bank.

Read, R
Adams, P
Arendall, W
Brunger, A
Emsley, P
Joosten, R
Kleywegt, G
Krissinel, E
Lütteke, T
Otwinowski, Z
Perrakis, A
Richardson, J
Sheffler, W
Smith, J
Tickle, I
Vriend, G
Zwart, P

January 2011

This report presents the conclusions of the X-ray Validation Task Force of the worldwide Protein Dat...

Towards a more comprehensive crystallography

Janner, A.

January 1995

Contains fulltext : 29618___.PDF (publisher's version ) (Closed access

Validation tools: can they indicate the information content of macromolecular crystal structures?

Dodson, E. J.
Davies, G. J.
Lamzin, V. S.
Murshudov, G. N.
Wilson, K. S.

January 1998

The explosive increase in the number of published three-dimensionsal structures of macromolecules de...

RCSB Protein Data bank: Tools for visualizing and understanding biological macromolecules in 3D

Burley, Stephen K
Bhikadiya, Charmi
Bi, Chunxiao
Bittrich, Sebastian
Chao, Henry
Chen, Li
Craig, Paul A
Crichlow, Gregg V
Dalenberg, Kenneth
Duarte, Jose M
Dutta, Shuchismita
Fayazi, Maryam
Feng, Zukang
Flatt, Justin W
Ganesan, Sai J
Ghosh, Sutapa
Goodsell, David S
Green, Rachel Kramer
Guranovic, Vladimir
Henry, Jeremy
Hudson, Brian P
Khokhriakov, Igor
Lawson, Catherine L
Liang, Yuhe
Lowe, Robert
Peisach, Ezra
Persikova, Irina
Piehl, Dennis W
Rose, Yana
Sali, Andrej
Segura, Joan
Sekharan, Monica
Shao, Chenghua
Vallat, Brinda
Voigt, Maria
Webb, Benjamin
Westbrook, John D
Whetstone, Shamara
Young, Jasmine Y
Zalevsky, Arthur
Zardecki, Christine

December 2022

Now in its 52nd year of continuous operations, the Protein Data Bank (PDB) is the premiere open-acce...

New Biological Insights from Better Structure Models

Touw, W.G.
Joosten, R.P.
Vriend, G.

January 2016

Item does not contain fulltextStructure validation is a key component of all steps in the structure ...

The alpha/beta-hydrolase fold 3DM database (ABHDB) as a tool for protein engineering.

Kourist, R.
Jochens, H.
Bartsch, S.
Kuipers, R.K.P.
Padhi, S.K.
Gall, M.
Bottcher, D.
Joosten, H.J.
Bornscheuer, U.T.

January 2010

Contains fulltext : 88994.pdf (publisher's version ) (Closed access

Validation tools: can they indicate the information content of macromolecular crystal structures?

Dodson, EJ
Davies, GJ
Lamzin, VS
Murshudov, GN
Wilson, KS

June 1998

AbstractThe explosive increase in the number of published three-dimensionsal structures of macromole...

Structural bioinformatics XtalPred: a web server for prediction of protein crystallizability

Lukasz Slabinski
Lukasz Jaroszewski
Leszek Rychlewski
Ian A. Wilson
Scott A. Lesley
Adam Godzik

December 2014

Summary: XtalPred is a web server for prediction of protein crystallizability. The prediction is mad...

RCSB Protein Data Bank: Enabling biomedical research and drug discovery

Goodsell, David S
Zardecki, Christine
Di Costanzo, Luigi
Duarte, Jose M
Hudson, Brian P
Persikova, Irina
Segura, Joan
Shao, Chenghua
Voigt, Maria
Westbrook, John D
Young, Jasmine Y
Burley, Stephen K

January 2020

Analyses of publicly-available structural data reveal interesting insights into the impact of the th...

Crystallography Made Crystal Clear, Third Edition: A Guide for Users of Macromolecular Models

Rhodes, Gale

January 2006

An overview of protein crystallography.https://digitalcommons.usm.maine.edu/facbooks/1105/thumbnail....

New Biological Insights from Better Structure Models

Touw, Wouter G.
Joosten, Robbie P.
Vriend, Gert

March 2016

AbstractStructure validation is a key component of all steps in the structure determination process,...

Protein Data Bank: The single global archive for 3D macromolecular structure data

Burley S. K.
Berman H. M.
Bhikadiya C.
Bi C.
Chen L.
Di Costanzo Luigi
ADDEO, PIETRO FRANCESCO BRUNO CHRISTI
Duarte J. M.
Dutta S.
Feng Z.
Ghosh S.
Goodsell D. S.
Green R. K.
Guranovic V.
Guzenko D.
Hudson B. P.
Liang Y.
Lowe R.
Peisach E.
Periskova I.
Randle C.
Rose A.
Sekharan M.
Shao C.
Tao Y. -P.
Valasatava Y.
Voigt M.
Westbrook J.
Young J.
Zardecki C.
Zhuravleva M.
Kurisu G.
Nakamura H.
Kengaku Y.
Cho H.
Sato J.
Kim J. Y.
Ikegawa Y.
Nakagawa A.
Yamashita R.
Kudou T.
Bekker G. -J.
Suzuki H.
Iwata T.
Yokochi M.
Kobayashi N.
Fujiwara T.
Velankar S.
Kleywegt G. J.
Anyango S.
Armstrong D. R.
Berrisford J. M.
Conroy M. J.
Dana J. M.
Deshpande M.
Gane P.
Gaborova R.
Gupta D.
Gutmanas A.
Koca J.
Mak L.
EL MIR, ABDELOUAHAD
Mukhopadhyay A.
Nadzirin N.
Nair S.
Patwardhan A.
Paysan-Lafosse T.
Pravda L.
Salih O.
Sehnal D.
Varadi M.
Varekova R.
Markley J. L.
Hoch J. C.
Romero P. R.
Baskaran K.
Maziuk D.
Ulrich E. L.
Wedell J. R.
Sicong, Yao
Livny M.
Ioannidis Y. E.

January 2019

The Protein Data Bank (PDB) is the single global archive of experimentally determined three-dimensio...

Validation of protein structures derived by NMR spectroscopy

Spronk, C.A.E.M.
Nabuurs, S.B.
Krieger, E.
Vriend, G.
Vuister, G.W.

January 2004

Contains fulltext : 59100.pdf (publisher's version ) (Closed access

The Protein Data Bank: Current Status and Future Challenges

Joel L. Sussman
Enrique E. Abola
Nancy O. Manning
Jaime Prilusky

November 2007

The Protein Data Bank (PDB) is an archive of experimentally determined, three-dimensional structures...

A New Generation of Crystallographic Validation Tools for the Protein Data Bank

Read, Randy J.
Adams, Paul D.
Arendall, W. Bryan
Brunger, Axel T.
Emsley, Paul
Joosten, Robbie P.
Kleywegt, Gerard J.
Krissinel, Eugene B.
Lütteke, Thomas
Otwinowski, Zbyszek
Perrakis, Anastassis
Richardson, Jane S.
Sheffler, William H.
Smith, Janet L.
Tickle, Ian J.
Vriend, Gert
Zwart, Peter H.

October 2011

SummaryThis report presents the conclusions of the X-ray Validation Task Force of the worldwide Prot...

A new generation of crystallographic validation tools for the protein data bank.

Read, R
Adams, P
Arendall, W
Brunger, A
Emsley, P
Joosten, R
Kleywegt, G
Krissinel, E
Lütteke, T
Otwinowski, Z
Perrakis, A
Richardson, J
Sheffler, W
Smith, J
Tickle, I
Vriend, G
Zwart, P

January 2011

This report presents the conclusions of the X-ray Validation Task Force of the worldwide Protein Dat...

Towards a more comprehensive crystallography

Janner, A.

January 1995

Contains fulltext : 29618___.PDF (publisher's version ) (Closed access

Validation tools: can they indicate the information content of macromolecular crystal structures?

Dodson, E. J.
Davies, G. J.
Lamzin, V. S.
Murshudov, G. N.
Wilson, K. S.

January 1998

The explosive increase in the number of published three-dimensionsal structures of macromolecules de...

RCSB Protein Data bank: Tools for visualizing and understanding biological macromolecules in 3D

Burley, Stephen K
Bhikadiya, Charmi
Bi, Chunxiao
Bittrich, Sebastian
Chao, Henry
Chen, Li
Craig, Paul A
Crichlow, Gregg V
Dalenberg, Kenneth
Duarte, Jose M
Dutta, Shuchismita
Fayazi, Maryam
Feng, Zukang
Flatt, Justin W
Ganesan, Sai J
Ghosh, Sutapa
Goodsell, David S
Green, Rachel Kramer
Guranovic, Vladimir
Henry, Jeremy
Hudson, Brian P
Khokhriakov, Igor
Lawson, Catherine L
Liang, Yuhe
Lowe, Robert
Peisach, Ezra
Persikova, Irina
Piehl, Dennis W
Rose, Yana
Sali, Andrej
Segura, Joan
Sekharan, Monica
Shao, Chenghua
Vallat, Brinda
Voigt, Maria
Webb, Benjamin
Westbrook, John D
Whetstone, Shamara
Young, Jasmine Y
Zalevsky, Arthur
Zardecki, Christine

December 2022

Now in its 52nd year of continuous operations, the Protein Data Bank (PDB) is the premiere open-acce...

New Biological Insights from Better Structure Models

Touw, W.G.
Joosten, R.P.
Vriend, G.

January 2016

Item does not contain fulltextStructure validation is a key component of all steps in the structure ...

The alpha/beta-hydrolase fold 3DM database (ABHDB) as a tool for protein engineering.

Kourist, R.
Jochens, H.
Bartsch, S.
Kuipers, R.K.P.
Padhi, S.K.
Gall, M.
Bottcher, D.
Joosten, H.J.
Bornscheuer, U.T.

January 2010

Contains fulltext : 88994.pdf (publisher's version ) (Closed access

Validation tools: can they indicate the information content of macromolecular crystal structures?

Dodson, EJ
Davies, GJ
Lamzin, VS
Murshudov, GN
Wilson, KS

June 1998

AbstractThe explosive increase in the number of published three-dimensionsal structures of macromole...

Structural bioinformatics XtalPred: a web server for prediction of protein crystallizability

Lukasz Slabinski
Lukasz Jaroszewski
Leszek Rychlewski
Ian A. Wilson
Scott A. Lesley
Adam Godzik

December 2014

Summary: XtalPred is a web server for prediction of protein crystallizability. The prediction is mad...

RCSB Protein Data Bank: Enabling biomedical research and drug discovery

Goodsell, David S
Zardecki, Christine
Di Costanzo, Luigi
Duarte, Jose M
Hudson, Brian P
Persikova, Irina
Segura, Joan
Shao, Chenghua
Voigt, Maria
Westbrook, John D
Young, Jasmine Y
Burley, Stephen K

January 2020

Analyses of publicly-available structural data reveal interesting insights into the impact of the th...

Crystallography Made Crystal Clear, Third Edition: A Guide for Users of Macromolecular Models

Rhodes, Gale

January 2006

An overview of protein crystallography.https://digitalcommons.usm.maine.edu/facbooks/1105/thumbnail....

New Biological Insights from Better Structure Models

Touw, Wouter G.
Joosten, Robbie P.
Vriend, Gert

March 2016

AbstractStructure validation is a key component of all steps in the structure determination process,...

Protein Data Bank: The single global archive for 3D macromolecular structure data

Burley S. K.
Berman H. M.
Bhikadiya C.
Bi C.
Chen L.
Di Costanzo Luigi
ADDEO, PIETRO FRANCESCO BRUNO CHRISTI
Duarte J. M.
Dutta S.
Feng Z.
Ghosh S.
Goodsell D. S.
Green R. K.
Guranovic V.
Guzenko D.
Hudson B. P.
Liang Y.
Lowe R.
Peisach E.
Periskova I.
Randle C.
Rose A.
Sekharan M.
Shao C.
Tao Y. -P.
Valasatava Y.
Voigt M.
Westbrook J.
Young J.
Zardecki C.
Zhuravleva M.
Kurisu G.
Nakamura H.
Kengaku Y.
Cho H.
Sato J.
Kim J. Y.
Ikegawa Y.
Nakagawa A.
Yamashita R.
Kudou T.
Bekker G. -J.
Suzuki H.
Iwata T.
Yokochi M.
Kobayashi N.
Fujiwara T.
Velankar S.
Kleywegt G. J.
Anyango S.
Armstrong D. R.
Berrisford J. M.
Conroy M. J.
Dana J. M.
Deshpande M.
Gane P.
Gaborova R.
Gupta D.
Gutmanas A.
Koca J.
Mak L.
EL MIR, ABDELOUAHAD
Mukhopadhyay A.
Nadzirin N.
Nair S.
Patwardhan A.
Paysan-Lafosse T.
Pravda L.
Salih O.
Sehnal D.
Varadi M.
Varekova R.
Markley J. L.
Hoch J. C.
Romero P. R.
Baskaran K.
Maziuk D.
Ulrich E. L.
Wedell J. R.
Sicong, Yao
Livny M.
Ioannidis Y. E.

January 2019

The Protein Data Bank (PDB) is the single global archive of experimentally determined three-dimensio...

Validation of protein structures derived by NMR spectroscopy

Spronk, C.A.E.M.
Nabuurs, S.B.
Krieger, E.
Vriend, G.
Vuister, G.W.

January 2004

Contains fulltext : 59100.pdf (publisher's version ) (Closed access

The Protein Data Bank: Current Status and Future Challenges

Joel L. Sussman
Enrique E. Abola
Nancy O. Manning
Jaime Prilusky

November 2007

The Protein Data Bank (PDB) is an archive of experimentally determined, three-dimensional structures...

A new generation of crystallographic validation tools for the protein data bank

Abstract

Extracted data

A new generation of crystallographic validation tools for the protein data bank

Abstract

Extracted data

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