Quantitative interaction proteomics and genome-wide profiling of epigenetic histone marks and their readers

Mass Spectrometry-Based Proteomics for the Analysis of Chromatin Structure and Dynamics

Monica Soldi

March 2013

Chromatin is a highly structured nucleoprotein complex made of histone proteins and DNA that control...

Identification of Histone Modifications in Biomedical Text for Supporting Epigenomic Research

Corinna, Kolarik
Klinger, Roman
Hofmann-Apitius, Martin

January 2009

Corinna K, Klinger R, Hofmann-Apitius M. Identification of Histone Modifications in Biomedical Text ...

Biochemical systems approaches for the analysis of histone modification readout

Soldi, Monica
Bremang, Michael
Bonaldi, Tiziana

August 2014

AbstractChromatin is the macromolecular nucleoprotein complex that governs the organization of genet...

Genome-wide epigenomic profiling for biomarker discovery

Dirks, R.A.M.
Stunnenberg, H.G.
Marks, H.

January 2016

Contains fulltext : 165648.pdf (publisher's version ) (Open Access

Quantitative Interaction Proteomics and Genome-wide Profiling of Epigenetic Histone Marks and Their Readers

Vermeulen, Michiel
Eberl, H. Christian
Matarese, Filomena
Marks, Hendrik
Denissov, Sergei
Butter, Falk
Lee, Kenneth K.
Olsen, Jesper V.
Hyman, Anthony A.
Stunnenberg, Henk G.
Mann, Matthias

September 2010

SummaryTrimethyl-lysine (me3) modifications on histones are the most stable epigenetic marks and the...

Quantitative interaction proteomics and genome-wide profiling of epigenetic histone marks and their readers.

Vermeulen, Michiel
Eberl, H Christian
Matarese, Filomena
Marks, Hendrik
Denissov, Sergei
Butter, Falk
Lee, Kenneth K
Olsen, Jesper V
Hyman, Anthony A.
Stunnenberg, Henk G
Mann, Matthias

January 2010

Trimethyl-lysine (me3) modifications on histones are the most stable epigenetic marks and they contr...

Catching global interactions in vivo

Yi Qiu
Suming Huang

September 2017

Abstract Histone proteins and transcription factors (TFs) play critical roles in gene transcription ...

An Interaction Proteomics Perspective on Chromatin Biology

Smits, A.H.

January 2016

The human body consists of billions of cells. These cells are not all the same, but they differ in s...

Genome-wide: the new frontiers of epigenetics

Menafra, R.

January 2015

Contains fulltext : 149033.pdf (publisher's version ) (Open Access)Radboud Univers...

Integrative analysis of 111 reference human epigenomes

Kundaje, Anshul
Meuleman, Wouter
Ernst, Jason
Bilenky, Misha
Yen, Angela
Heravi-Moussavi, Alireza
Kheradpour, Pouya
Zhang, Zhizhuo
Wang, Jianrong
Ziller, Michael J.
Amin, Viren
Whitaker, John W.
Schultz, Matthew D.
Ward, Lucas D.
Sarkar, Abhishek
Quon, Gerald
Sandstrom, Richard S.
Eaton, Matthew L.
Wu, Yi-Chieh
Pfenning, Andreas R.
Wang, Xinchen
Claussnitzer, Melina
Liu, Yaping
Coarfa, Cristian
Harris, R. Alan
Shoresh, Noam
Epstein, Charles B
Gjoneska, Elizabeta
Leung, Danny
Xie, Wei
Hawkins, R. David
Lister, Ryan
Hong, Chibo
Gascard, Philippe
Mungall, Andrew J.
Moore, Richard
Chuah, Eric
Tam, Angela
Canfield, Theresa K.
Hansen, R. Scott
Kaul, Rajinder
Sabo, Peter J.
Bansal, Mukul S.
Carles, Annaick
Dixon, Jesse R.
Farh, Kai-How
Feizi, Soheil
Karlic, Rosa
Kim, Ah-Ram
Kulkarni, Ashwinikumar
Li, Daofeng
Lowdon, Rebecca
Elliott, GiNell
Mercer, Tim R.
Neph, Shane J.
Onuchic, Vitor
Polak, Paz
Rajagopal, Nisha
Ray, Pradipta
Sallari, Richard C.
Siebenthall, Kyle T.
Sinnott-Armstrong, Nicholas A.
Stevens, Michael
Thurman, Robert E.
Wu, Jie
Zhang, Bo
Zhou, Xin
Beaudet, Arthur E.
Boyer, Laurie A.
De Jager, Philip L.
Farnham, Peggy J.
Fisher, Susan J.
Haussler, David
Jones, Steven J. M.
Li, Wei
Marra, Marco A.
McManus, Michael T.
Sunyaev, Shamil
Thomson, James A.
Tlsty, Thea D.
Tsai, Li-Huei
Wang, Wei
Waterland, Robert A.
Zhang, Michael Q.
Chadwick, Lisa H.
Bernstein, Bradley E.
Costello, Joseph F.
Ecker, Joseph R.
Hirst, Martin
Meissner, Alexander
Milosavljevic, Aleksandar
Ren, Bing
Stamatoyannopoulos, John A.
Wang, Ting
Kellis, Manolis

January 2015

The reference human genome sequence set the stage for studies of genetic variation and its associati...

RESEARCH Open Access Analysis

Genboree Workbench Tools
Cristian Coarfa
Christina Stewart Pichot
Andrew Jackson
Arpit T
Viren Amin
Sriram Raghuraman

October 2015

of interactions between the epigenome and structural mutability of the genome usin

Discovery of Novel Readers for Interpretation of the Epigenome

Essel, Francisca

January 2015

Histone modifications, also known as covalent histone marks, such as acetylation, methylation, phosp...

Genome-wide search for DNA methylation sites that control the blood proteome

Majid Nikpay

February 2022

This unix package aims to investigate the contribution of epigenome-proteome biomarker pairs listed ...

Write, Read, Erase, Repeat: Investigating the fundamental chemical-biological interactions behind the readout process of the epigenetic histone trimethyllysine mark

Pieters, Bas

January 2017

Contains fulltext : 174891.pdf (publisher's version ) (Open Access)Radboud Univers...

An interactive mass spectrometry atlas of histone posttranslational modifications in T-cell acute leukemia

Provez, Lien
Van Puyvelde, Bart
Corveleyn, Laura
Demeulemeester, Nina
Verhelst, Sigrid
Lintermans, Beatrice
Daled, Simon
Roels, Juliette
Clement, Lieven
Martens, Lennart
Deforce, Dieter
Van Vlierberghe, Pieter
Dhaenens, Maarten

January 2022

The holistic nature of omics studies makes them ideally suited to generate hypotheses on health and ...

Mass Spectrometry-Based Proteomics for the Analysis of Chromatin Structure and Dynamics

Monica Soldi

March 2013

Chromatin is a highly structured nucleoprotein complex made of histone proteins and DNA that control...

Identification of Histone Modifications in Biomedical Text for Supporting Epigenomic Research

Corinna, Kolarik
Klinger, Roman
Hofmann-Apitius, Martin

January 2009

Corinna K, Klinger R, Hofmann-Apitius M. Identification of Histone Modifications in Biomedical Text ...

Biochemical systems approaches for the analysis of histone modification readout

Soldi, Monica
Bremang, Michael
Bonaldi, Tiziana

August 2014

AbstractChromatin is the macromolecular nucleoprotein complex that governs the organization of genet...

Genome-wide epigenomic profiling for biomarker discovery

Dirks, R.A.M.
Stunnenberg, H.G.
Marks, H.

January 2016

Contains fulltext : 165648.pdf (publisher's version ) (Open Access

Quantitative Interaction Proteomics and Genome-wide Profiling of Epigenetic Histone Marks and Their Readers

Vermeulen, Michiel
Eberl, H. Christian
Matarese, Filomena
Marks, Hendrik
Denissov, Sergei
Butter, Falk
Lee, Kenneth K.
Olsen, Jesper V.
Hyman, Anthony A.
Stunnenberg, Henk G.
Mann, Matthias

September 2010

SummaryTrimethyl-lysine (me3) modifications on histones are the most stable epigenetic marks and the...

Quantitative interaction proteomics and genome-wide profiling of epigenetic histone marks and their readers.

Vermeulen, Michiel
Eberl, H Christian
Matarese, Filomena
Marks, Hendrik
Denissov, Sergei
Butter, Falk
Lee, Kenneth K
Olsen, Jesper V
Hyman, Anthony A.
Stunnenberg, Henk G
Mann, Matthias

January 2010

Trimethyl-lysine (me3) modifications on histones are the most stable epigenetic marks and they contr...

Catching global interactions in vivo

Yi Qiu
Suming Huang

September 2017

Abstract Histone proteins and transcription factors (TFs) play critical roles in gene transcription ...

An Interaction Proteomics Perspective on Chromatin Biology

Smits, A.H.

January 2016

The human body consists of billions of cells. These cells are not all the same, but they differ in s...

Genome-wide: the new frontiers of epigenetics

Menafra, R.

January 2015

Contains fulltext : 149033.pdf (publisher's version ) (Open Access)Radboud Univers...

Integrative analysis of 111 reference human epigenomes

Kundaje, Anshul
Meuleman, Wouter
Ernst, Jason
Bilenky, Misha
Yen, Angela
Heravi-Moussavi, Alireza
Kheradpour, Pouya
Zhang, Zhizhuo
Wang, Jianrong
Ziller, Michael J.
Amin, Viren
Whitaker, John W.
Schultz, Matthew D.
Ward, Lucas D.
Sarkar, Abhishek
Quon, Gerald
Sandstrom, Richard S.
Eaton, Matthew L.
Wu, Yi-Chieh
Pfenning, Andreas R.
Wang, Xinchen
Claussnitzer, Melina
Liu, Yaping
Coarfa, Cristian
Harris, R. Alan
Shoresh, Noam
Epstein, Charles B
Gjoneska, Elizabeta
Leung, Danny
Xie, Wei
Hawkins, R. David
Lister, Ryan
Hong, Chibo
Gascard, Philippe
Mungall, Andrew J.
Moore, Richard
Chuah, Eric
Tam, Angela
Canfield, Theresa K.
Hansen, R. Scott
Kaul, Rajinder
Sabo, Peter J.
Bansal, Mukul S.
Carles, Annaick
Dixon, Jesse R.
Farh, Kai-How
Feizi, Soheil
Karlic, Rosa
Kim, Ah-Ram
Kulkarni, Ashwinikumar
Li, Daofeng
Lowdon, Rebecca
Elliott, GiNell
Mercer, Tim R.
Neph, Shane J.
Onuchic, Vitor
Polak, Paz
Rajagopal, Nisha
Ray, Pradipta
Sallari, Richard C.
Siebenthall, Kyle T.
Sinnott-Armstrong, Nicholas A.
Stevens, Michael
Thurman, Robert E.
Wu, Jie
Zhang, Bo
Zhou, Xin
Beaudet, Arthur E.
Boyer, Laurie A.
De Jager, Philip L.
Farnham, Peggy J.
Fisher, Susan J.
Haussler, David
Jones, Steven J. M.
Li, Wei
Marra, Marco A.
McManus, Michael T.
Sunyaev, Shamil
Thomson, James A.
Tlsty, Thea D.
Tsai, Li-Huei
Wang, Wei
Waterland, Robert A.
Zhang, Michael Q.
Chadwick, Lisa H.
Bernstein, Bradley E.
Costello, Joseph F.
Ecker, Joseph R.
Hirst, Martin
Meissner, Alexander
Milosavljevic, Aleksandar
Ren, Bing
Stamatoyannopoulos, John A.
Wang, Ting
Kellis, Manolis

January 2015

The reference human genome sequence set the stage for studies of genetic variation and its associati...

RESEARCH Open Access Analysis

Genboree Workbench Tools
Cristian Coarfa
Christina Stewart Pichot
Andrew Jackson
Arpit T
Viren Amin
Sriram Raghuraman

October 2015

of interactions between the epigenome and structural mutability of the genome usin

Discovery of Novel Readers for Interpretation of the Epigenome

Essel, Francisca

January 2015

Histone modifications, also known as covalent histone marks, such as acetylation, methylation, phosp...

Genome-wide search for DNA methylation sites that control the blood proteome

Majid Nikpay

February 2022

This unix package aims to investigate the contribution of epigenome-proteome biomarker pairs listed ...

Write, Read, Erase, Repeat: Investigating the fundamental chemical-biological interactions behind the readout process of the epigenetic histone trimethyllysine mark

Pieters, Bas

January 2017

Contains fulltext : 174891.pdf (publisher's version ) (Open Access)Radboud Univers...

An interactive mass spectrometry atlas of histone posttranslational modifications in T-cell acute leukemia

Provez, Lien
Van Puyvelde, Bart
Corveleyn, Laura
Demeulemeester, Nina
Verhelst, Sigrid
Lintermans, Beatrice
Daled, Simon
Roels, Juliette
Clement, Lieven
Martens, Lennart
Deforce, Dieter
Van Vlierberghe, Pieter
Dhaenens, Maarten

January 2022

The holistic nature of omics studies makes them ideally suited to generate hypotheses on health and ...

Mass Spectrometry-Based Proteomics for the Analysis of Chromatin Structure and Dynamics

Monica Soldi

March 2013

Chromatin is a highly structured nucleoprotein complex made of histone proteins and DNA that control...

Identification of Histone Modifications in Biomedical Text for Supporting Epigenomic Research

Corinna, Kolarik
Klinger, Roman
Hofmann-Apitius, Martin

January 2009

Corinna K, Klinger R, Hofmann-Apitius M. Identification of Histone Modifications in Biomedical Text ...

Biochemical systems approaches for the analysis of histone modification readout

Soldi, Monica
Bremang, Michael
Bonaldi, Tiziana

August 2014

AbstractChromatin is the macromolecular nucleoprotein complex that governs the organization of genet...

Quantitative interaction proteomics and genome-wide profiling of epigenetic histone marks and their readers

Abstract

Extracted data

Quantitative interaction proteomics and genome-wide profiling of epigenetic histone marks and their readers

Abstract

Extracted data

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