MTR: Taxonomic annotation of short metagenomic reads using clustering at multiple taxonomic ranks

Rights Creative Commons: Attribution 3.0 Hong Kong License PROCEEDINGS Open Access

Yi Wang
Henry Chi
Ming Leung
Siu Ming Yiu
Francis Yuk
Lun Chin

September 2016

MetaCluster-TA: taxonomic annotation for metagenomic data based on assembly-assisted binnin

METAREP: JCVI Metagenomics Reports - an open source tool for high-performance comparative metagenomics. Bioinformatics

Johannes Goll
Doug Rusch
David M. Tanenbaum
Kelvin Li
Barbara A. Methé
Shibu Yooseph

January 2010

Summary: JCVI Metagenomics Reports (METAREP) is a Web 2.0 application designed to help scientists an...

Genomics and Machine Learning for Taxonomy Consensus: The Mycobacterium tuberculosis Complex Paradigm.

Azé, J.
Sola, C.
Zhang, J.
Lafosse-Marin, F.
Yasmin, M.
Siddiqui, R.
Kremer, K.
Soolingen, D. van
Refrégier, G.

January 2015

Contains fulltext : 155365.PDF (publisher's version ) (Open Access

OGRE: Overlap Graph-based metagenomic Read clustEring

Balvert, M.
Luo, Xiao
Hauptfeld, Ernestina
Schonhuth, A.
Dutilh, B.E.

January 2021

Contains fulltext : 234958.pdf (Publisher’s version ) (Open Access

Evidence-based Clustering of Reads and Taxonomic Analysis of Metagenomic Data

Folino, G.
Gori, F.
Jetten, M.S.M.
Marchiori, E.

January 2009

Contains fulltext : 75597.pdf (preprint version ) (Open Access)Pattern Recognition...

mTAGs: taxonomic profiling using degenerate consensus reference sequences of ribosomal RNA genes

Salazar Guiral, Guillem
Ruscheweyh, Hans-Joachim
Hildebrand, Falk
Acinas, Silvia G.
Sunagawa, Shinichi

January 2022

Profiling the taxonomic composition of microbial communities commonly involves the classification of...

Metagenomic data analysis : computational methods and applications

Gori, F.

January 2013

Contains fulltext : 105783.pdf (publisher's version ) (Open Access)Metagenomics is...

Clustering Metagenome Short Reads using Weighted Proteins

Folino, G.
Gori, F.
Jetten, M.S.M.
Marchiori, E.

January 2009

Contains fulltext : 75322.pdf (preprint version ) (Open Access)7th European Confer...

A Statistical Framework for Accurate Taxonomic Assignment of Metagenomic Sequencing Reads

Hongmei Jiang (31560)
Lingling An (130626)
Simon M. Lin (56753)
Gang Feng (130630)
Yuqing Qiu (130632)

October 2012

<div><p>The advent of next-generation sequencing technologies has greatly promoted the field of meta...

MICCA: a complete and accurate software for taxonomic profiling of metagenomic data

Albanese, D.
Fontana, P.
De Filippo, C.
Cavalieri, D.
Donati, C.

January 2015

The introduction of high throughput sequencing technologies has triggered an increase of the number ...

A statistical framework for accurate taxonomic assignment of metagenomic sequencing reads.

Hongmei Jiang
Lingling An
Simon M Lin
Gang Feng
Yuqing Qiu

The advent of next-generation sequencing technologies has greatly promoted the field of metagenomics...

CoMeta: classification of metagenomes using k-mers.

Jolanta Kawulok
Sebastian Deorowicz

Nowadays, the study of environmental samples has been developing rapidly. Characterization of the en...

CoMeta: Classification of Metagenomes Using <i>k</i>-mers

Jolanta Kawulok (725740)
Sebastian Deorowicz (527134)

April 2015

<div><p>Nowadays, the study of environmental samples has been developing rapidly. Characterization o...

PROCEEDINGS Open Access

Tarini Shankar Ghosh
Monzoorul Haque M
Sharmila S M

August 2016

DiScRIBinATE: a rapid method for accurate taxonomic classification of metagenomic sequence

RAIphy: Phylogenetic classification of metagenomics samples using iterative refinement of relative abundance index profiles

Nalbantoglu, Ozkan U.
Hinrichs, Steven H.
Sayood, Khalid
Way, Samuel F.

January 2011

Background: Computational analysis of metagenomes requires the taxonomical assignment of the genome ...

Rights Creative Commons: Attribution 3.0 Hong Kong License PROCEEDINGS Open Access

Yi Wang
Henry Chi
Ming Leung
Siu Ming Yiu
Francis Yuk
Lun Chin

September 2016

MetaCluster-TA: taxonomic annotation for metagenomic data based on assembly-assisted binnin

METAREP: JCVI Metagenomics Reports - an open source tool for high-performance comparative metagenomics. Bioinformatics

Johannes Goll
Doug Rusch
David M. Tanenbaum
Kelvin Li
Barbara A. Methé
Shibu Yooseph

January 2010

Summary: JCVI Metagenomics Reports (METAREP) is a Web 2.0 application designed to help scientists an...

Genomics and Machine Learning for Taxonomy Consensus: The Mycobacterium tuberculosis Complex Paradigm.

Azé, J.
Sola, C.
Zhang, J.
Lafosse-Marin, F.
Yasmin, M.
Siddiqui, R.
Kremer, K.
Soolingen, D. van
Refrégier, G.

January 2015

Contains fulltext : 155365.PDF (publisher's version ) (Open Access

OGRE: Overlap Graph-based metagenomic Read clustEring

Balvert, M.
Luo, Xiao
Hauptfeld, Ernestina
Schonhuth, A.
Dutilh, B.E.

January 2021

Contains fulltext : 234958.pdf (Publisher’s version ) (Open Access

Evidence-based Clustering of Reads and Taxonomic Analysis of Metagenomic Data

Folino, G.
Gori, F.
Jetten, M.S.M.
Marchiori, E.

January 2009

Contains fulltext : 75597.pdf (preprint version ) (Open Access)Pattern Recognition...

mTAGs: taxonomic profiling using degenerate consensus reference sequences of ribosomal RNA genes

Salazar Guiral, Guillem
Ruscheweyh, Hans-Joachim
Hildebrand, Falk
Acinas, Silvia G.
Sunagawa, Shinichi

January 2022

Profiling the taxonomic composition of microbial communities commonly involves the classification of...

Metagenomic data analysis : computational methods and applications

Gori, F.

January 2013

Contains fulltext : 105783.pdf (publisher's version ) (Open Access)Metagenomics is...

Clustering Metagenome Short Reads using Weighted Proteins

Folino, G.
Gori, F.
Jetten, M.S.M.
Marchiori, E.

January 2009

Contains fulltext : 75322.pdf (preprint version ) (Open Access)7th European Confer...

A Statistical Framework for Accurate Taxonomic Assignment of Metagenomic Sequencing Reads

Hongmei Jiang (31560)
Lingling An (130626)
Simon M. Lin (56753)
Gang Feng (130630)
Yuqing Qiu (130632)

October 2012

<div><p>The advent of next-generation sequencing technologies has greatly promoted the field of meta...

MICCA: a complete and accurate software for taxonomic profiling of metagenomic data

Albanese, D.
Fontana, P.
De Filippo, C.
Cavalieri, D.
Donati, C.

January 2015

The introduction of high throughput sequencing technologies has triggered an increase of the number ...

A statistical framework for accurate taxonomic assignment of metagenomic sequencing reads.

Hongmei Jiang
Lingling An
Simon M Lin
Gang Feng
Yuqing Qiu

The advent of next-generation sequencing technologies has greatly promoted the field of metagenomics...

CoMeta: classification of metagenomes using k-mers.

Jolanta Kawulok
Sebastian Deorowicz

Nowadays, the study of environmental samples has been developing rapidly. Characterization of the en...

CoMeta: Classification of Metagenomes Using <i>k</i>-mers

Jolanta Kawulok (725740)
Sebastian Deorowicz (527134)

April 2015

<div><p>Nowadays, the study of environmental samples has been developing rapidly. Characterization o...

PROCEEDINGS Open Access

Tarini Shankar Ghosh
Monzoorul Haque M
Sharmila S M

August 2016

DiScRIBinATE: a rapid method for accurate taxonomic classification of metagenomic sequence

RAIphy: Phylogenetic classification of metagenomics samples using iterative refinement of relative abundance index profiles

Nalbantoglu, Ozkan U.
Hinrichs, Steven H.
Sayood, Khalid
Way, Samuel F.

January 2011

Background: Computational analysis of metagenomes requires the taxonomical assignment of the genome ...

Rights Creative Commons: Attribution 3.0 Hong Kong License PROCEEDINGS Open Access

Yi Wang
Henry Chi
Ming Leung
Siu Ming Yiu
Francis Yuk
Lun Chin

September 2016

MetaCluster-TA: taxonomic annotation for metagenomic data based on assembly-assisted binnin

METAREP: JCVI Metagenomics Reports - an open source tool for high-performance comparative metagenomics. Bioinformatics

Johannes Goll
Doug Rusch
David M. Tanenbaum
Kelvin Li
Barbara A. Methé
Shibu Yooseph

January 2010

Summary: JCVI Metagenomics Reports (METAREP) is a Web 2.0 application designed to help scientists an...

Genomics and Machine Learning for Taxonomy Consensus: The Mycobacterium tuberculosis Complex Paradigm.

Azé, J.
Sola, C.
Zhang, J.
Lafosse-Marin, F.
Yasmin, M.
Siddiqui, R.
Kremer, K.
Soolingen, D. van
Refrégier, G.

January 2015

Contains fulltext : 155365.PDF (publisher's version ) (Open Access

MTR: Taxonomic annotation of short metagenomic reads using clustering at multiple taxonomic ranks

Abstract

Extracted data

MTR: Taxonomic annotation of short metagenomic reads using clustering at multiple taxonomic ranks

Abstract

Extracted data

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