PanFunPro

<p>PanFunPro stands for PAN-genome analysis based on FUNctional PROfiles. PanFunPro is a tool for</p> <p>pan-genome analysis. It has several following functionalities – (1) homology detection and genome</p> <p>functional characterization by three HMM-collections, (2) pan-/core genome calculation within the</p> <p>set of proteomes, (3) pairwise pan-/core-genome analysis, (4) specific genome calculation for different</p> <p>subsets of genomes as well as pairwise analysis of specific proteomes, (5) basic statistics for</p> <p>the output genes from the pan-/core-/specific-genome calculation, (6) analysis of available GO</p> <p>information for the output genes from the pan-/core-/specific-genome calculation.</p> <p> </p> <p>PanFunPro is provided in two parts: PanFunPro2profiles.pl and PanFunPro2apply.pl