MOESM11 of Transcriptomic analysis of Aspergillus niger strains reveals the mechanism underlying high citric acid productivity

Genome sequencing and analysis of the versatile cell factory Aspergillus niger CBS 513.88

Pel, H.J.
Winde, J.H. de
Archer, D.B.
Dyer, P.S.
Hofmann, G.
Schaap, P.J.
Turner, G.
Vries, R.P. de
Albang, R.
Albermann, K.
Andersen, M.R.
Bendtsen, J.D.
Benen, J.A.
Berg, M. van den
Breestraat, S.
Caddick, M.X.
Contreras, R.
Cornell, M.
Coutinho, P.M.
Danchin, E.G.
Debets, A.J.
Dekker, P.
Dijck, P.W. van
Dijk, A. van
Dijkhuizen, L.
Driessen, A.J.
D'Enfert, C.
Geysens, S.
Goosen, C.
Groot, G.S.
Groot, P.W. de
Guillemette, T.
Henrissat, B.
Herweijer, M.
Hombergh, J.P. van den
Hondel, C.A. van den
Heijden, R.T.J.M. van der
Kaaij, R.M. van der
Klis, F.M.
Kools, H.J.
Kubicek, C.P.
Kuyk, P.A. van
Lauber, J.
Lu, X.
Maarel, M.J. van der
Meulenberg, R.
Menke, H.
Mortimer, M.A.
Nielsen, J.
Oliver, S.G.
Olsthoorn, M.
Pal, K.
Peij, N.N. van
Ram, A.F.
Rinas, U.
Roubos, J.A.
Sagt, C.M.
Schmoll, M.
Sun, J.
Ussery, D.
Varga, J.
Vervecken, W.
Vondervoort, P.J. van de
Wedler, H.
Wosten, H.A.
Zeng, A.P.
Ooyen, A.J. van
Visser, J.C.
Stam, H.

January 2007

Contains fulltext : 51722.pdf (publisher's version ) (Closed access)The filamentou...

Systemic analysis of the response of Aspergillus niger to ambient pH

Andersen, M. R.
Lehmann, L.
Nielsen, Jens B

January 2009

Background: The filamentous fungus Aspergillus niger is an exceptionally efficient producer of organ...

INVESTIGATION Identification of a Classical Mutant in the Industrial Host Aspergillus niger by Systems Genetics: LaeA Is Required for Citric Acid Production and Regulates

August 2016

ABSTRACT The asexual filamentous fungus Aspergillus niger is an important industrial cell factory fo...

MOESM10 of Transcriptomic analysis of Aspergillus niger strains reveals the mechanism underlying high citric acid productivity

Hui Xie (195238)
Qinyuan Ma (5224985)
Dong-Zhi Wei (2359927)
Feng-Qing Wang (2359921)

May 2018

Additional file 10: Table S10. Details of the upregulated genes and all FPKM values in S1/S2 at 40 h

MOESM8 of Transcriptomic analysis of Aspergillus niger strains reveals the mechanism underlying high citric acid productivity

Hui Xie (195238)
Qinyuan Ma (5224985)
Dong-Zhi Wei (2359927)
Feng-Qing Wang (2359921)

May 2018

Additional file 8: Table S8. Details of the upregulated genes and all FPKM values in S1/S2 at 10 h

MOESM6 of Transcriptomic analysis of Aspergillus niger strains reveals the mechanism underlying high citric acid productivity

Hui Xie (195238)
Qinyuan Ma (5224985)
Dong-Zhi Wei (2359927)
Feng-Qing Wang (2359921)

May 2018

Additional file 6: Table S6. Details of the upregulated genes and all FPKM values in S1/S3 at 40 h

MOESM7 of Transcriptomic analysis of Aspergillus niger strains reveals the mechanism underlying high citric acid productivity

Hui Xie (195238)
Qinyuan Ma (5224985)
Dong-Zhi Wei (2359927)
Feng-Qing Wang (2359921)

May 2018

Additional file 7: Table S7. Details of the downregulated genes and all FPKM values in S1/S3 at 40 h

MOESM4 of Transcriptomic analysis of Aspergillus niger strains reveals the mechanism underlying high citric acid productivity

Hui Xie (195238)
Qinyuan Ma (5224985)
Dong-Zhi Wei (2359927)
Feng-Qing Wang (2359921)

May 2018

Additional file 4: Table S4. Details of the upregulated genes and all FPKM values in S1/S3 at h

MOESM1 of Transcriptomic analysis of Aspergillus niger strains reveals the mechanism underlying high citric acid productivity

Hui Xie (195238)
Qinyuan Ma (5224985)
Dong-Zhi Wei (2359927)
Feng-Qing Wang (2359921)

May 2018

Additional file 1: Table S1. The appendix file linking the CBS 513.88 annotation to ATCC 1015 annota...

Transcriptomic analysis of Aspergillus niger strains reveals the mechanism underlying high citric acid productivity

Hui Xie
Qinyuan Ma
Dong-Zhi Wei
Feng-Qing Wang

May 2018

Abstract Background Aspergillus niger is a highly important industrial microorganism because of its ...

MOESM1 of Systems metabolic engineering for citric acid production by Aspergillus niger in the post-genomic era

Zhenyu Tong (239355)
Xiaomei Zheng (2531440)
Yi Tong (45623)
Yong-Cheng Shi (4854538)
Jibin Sun (47351)

February 2019

Additional file 1: Table S1. Genome information of several A. niger strains. Table S2. Metabolic eng...

MOESM1 of Engineering Aspergillus niger for galactaric acid production: elimination of galactaric acid catabolism by using RNA sequencing and CRISPR/Cas9

Joosu Kuivanen (3434279)
Y.-M. Wang (3513266)
Peter Richard (648345)

December 2016

Additional file 1: Table S1. RNA sequencing data of A. niger wild type strain pre-cultivated on YP-m...

Systems Biology of Glucose Sensing and Repression in Aspergillus niger: Lessons from Genomics and Transcriptomics

Salazar Pena, Margarita

January 2010

Aspergillus comprises a genus of multicellular eukaryotic microorganisms containing close to 200 dif...

Comparative genomics of citric-acid producing Aspergillus niger ATCC 1015 versus enzyme-producing CBS 513.88

Grigoriev, Igor V.

July 2011

The filamentous fungus Aspergillus niger exhibits great diversity in its phenotype. It is found glob...

Comparative genomics of citric-acid-producing Aspergillus niger ATCC 1015 versus enzyme-producing CBS 513.88

Andersen, M. R.
Salazar Pena, Margarita
Schaap, P. J.
Van De Vondervoort, P. J. I.
Culley, D.
Thykaer, J.
Frisvad, J. C.
Nielsen, K. F.
Albang, R.
Albermann, K.
Berka, R. M.
Braus, G. H.
Braus-Stromeyer, S. A.
Corrochano, L. M.
Dai, Z.
Van Dijck, P. W. M.
Hofmann, G.
Lasure, L. L.
Magnuson, J. K.
Menke, H.
Meijer, M.
Meijer, S. L.
Nielsen, J. B.
Nielsen, M. L.
Van Ooyen, A. J. J.
Pel, H. J.
Poulsen, L.
Samson, R. A.
Stam, H.
Tsang, A.
Van Den Brink, J. M.
Atkins, A.
Aerts, A.
Shapiro, H.
Pangilinan, J.
Salamov, A.
Lou, Y.
Lindquist, E.
Lucas, S.
Grimwood, J.
Grigoriev, I. V.
Kubicek, C. P.
Martinez, D.
Van Peij, N. N. M. E.
Roubos, J. A.
Nielsen, Jens B
Baker, S. E.

January 2011

The filamentous fungus Aspergillus niger exhibits great diversity in its phenotype. It is found glob...

Genome sequencing and analysis of the versatile cell factory Aspergillus niger CBS 513.88

Pel, H.J.
Winde, J.H. de
Archer, D.B.
Dyer, P.S.
Hofmann, G.
Schaap, P.J.
Turner, G.
Vries, R.P. de
Albang, R.
Albermann, K.
Andersen, M.R.
Bendtsen, J.D.
Benen, J.A.
Berg, M. van den
Breestraat, S.
Caddick, M.X.
Contreras, R.
Cornell, M.
Coutinho, P.M.
Danchin, E.G.
Debets, A.J.
Dekker, P.
Dijck, P.W. van
Dijk, A. van
Dijkhuizen, L.
Driessen, A.J.
D'Enfert, C.
Geysens, S.
Goosen, C.
Groot, G.S.
Groot, P.W. de
Guillemette, T.
Henrissat, B.
Herweijer, M.
Hombergh, J.P. van den
Hondel, C.A. van den
Heijden, R.T.J.M. van der
Kaaij, R.M. van der
Klis, F.M.
Kools, H.J.
Kubicek, C.P.
Kuyk, P.A. van
Lauber, J.
Lu, X.
Maarel, M.J. van der
Meulenberg, R.
Menke, H.
Mortimer, M.A.
Nielsen, J.
Oliver, S.G.
Olsthoorn, M.
Pal, K.
Peij, N.N. van
Ram, A.F.
Rinas, U.
Roubos, J.A.
Sagt, C.M.
Schmoll, M.
Sun, J.
Ussery, D.
Varga, J.
Vervecken, W.
Vondervoort, P.J. van de
Wedler, H.
Wosten, H.A.
Zeng, A.P.
Ooyen, A.J. van
Visser, J.C.
Stam, H.

January 2007

Contains fulltext : 51722.pdf (publisher's version ) (Closed access)The filamentou...

Systemic analysis of the response of Aspergillus niger to ambient pH

Andersen, M. R.
Lehmann, L.
Nielsen, Jens B

January 2009

Background: The filamentous fungus Aspergillus niger is an exceptionally efficient producer of organ...

INVESTIGATION Identification of a Classical Mutant in the Industrial Host Aspergillus niger by Systems Genetics: LaeA Is Required for Citric Acid Production and Regulates

August 2016

ABSTRACT The asexual filamentous fungus Aspergillus niger is an important industrial cell factory fo...

MOESM10 of Transcriptomic analysis of Aspergillus niger strains reveals the mechanism underlying high citric acid productivity

Hui Xie (195238)
Qinyuan Ma (5224985)
Dong-Zhi Wei (2359927)
Feng-Qing Wang (2359921)

May 2018

Additional file 10: Table S10. Details of the upregulated genes and all FPKM values in S1/S2 at 40 h

MOESM8 of Transcriptomic analysis of Aspergillus niger strains reveals the mechanism underlying high citric acid productivity

Hui Xie (195238)
Qinyuan Ma (5224985)
Dong-Zhi Wei (2359927)
Feng-Qing Wang (2359921)

May 2018

Additional file 8: Table S8. Details of the upregulated genes and all FPKM values in S1/S2 at 10 h

MOESM6 of Transcriptomic analysis of Aspergillus niger strains reveals the mechanism underlying high citric acid productivity

Hui Xie (195238)
Qinyuan Ma (5224985)
Dong-Zhi Wei (2359927)
Feng-Qing Wang (2359921)

May 2018

Additional file 6: Table S6. Details of the upregulated genes and all FPKM values in S1/S3 at 40 h

MOESM7 of Transcriptomic analysis of Aspergillus niger strains reveals the mechanism underlying high citric acid productivity

Hui Xie (195238)
Qinyuan Ma (5224985)
Dong-Zhi Wei (2359927)
Feng-Qing Wang (2359921)

May 2018

Additional file 7: Table S7. Details of the downregulated genes and all FPKM values in S1/S3 at 40 h

MOESM4 of Transcriptomic analysis of Aspergillus niger strains reveals the mechanism underlying high citric acid productivity

Hui Xie (195238)
Qinyuan Ma (5224985)
Dong-Zhi Wei (2359927)
Feng-Qing Wang (2359921)

May 2018

Additional file 4: Table S4. Details of the upregulated genes and all FPKM values in S1/S3 at h

MOESM1 of Transcriptomic analysis of Aspergillus niger strains reveals the mechanism underlying high citric acid productivity

Hui Xie (195238)
Qinyuan Ma (5224985)
Dong-Zhi Wei (2359927)
Feng-Qing Wang (2359921)

May 2018

Additional file 1: Table S1. The appendix file linking the CBS 513.88 annotation to ATCC 1015 annota...

Transcriptomic analysis of Aspergillus niger strains reveals the mechanism underlying high citric acid productivity

Hui Xie
Qinyuan Ma
Dong-Zhi Wei
Feng-Qing Wang

May 2018

Abstract Background Aspergillus niger is a highly important industrial microorganism because of its ...

MOESM1 of Systems metabolic engineering for citric acid production by Aspergillus niger in the post-genomic era

Zhenyu Tong (239355)
Xiaomei Zheng (2531440)
Yi Tong (45623)
Yong-Cheng Shi (4854538)
Jibin Sun (47351)

February 2019

Additional file 1: Table S1. Genome information of several A. niger strains. Table S2. Metabolic eng...

MOESM1 of Engineering Aspergillus niger for galactaric acid production: elimination of galactaric acid catabolism by using RNA sequencing and CRISPR/Cas9

Joosu Kuivanen (3434279)
Y.-M. Wang (3513266)
Peter Richard (648345)

December 2016

Additional file 1: Table S1. RNA sequencing data of A. niger wild type strain pre-cultivated on YP-m...

Systems Biology of Glucose Sensing and Repression in Aspergillus niger: Lessons from Genomics and Transcriptomics

Salazar Pena, Margarita

January 2010

Aspergillus comprises a genus of multicellular eukaryotic microorganisms containing close to 200 dif...

Comparative genomics of citric-acid producing Aspergillus niger ATCC 1015 versus enzyme-producing CBS 513.88

Grigoriev, Igor V.

July 2011

The filamentous fungus Aspergillus niger exhibits great diversity in its phenotype. It is found glob...

Comparative genomics of citric-acid-producing Aspergillus niger ATCC 1015 versus enzyme-producing CBS 513.88

Andersen, M. R.
Salazar Pena, Margarita
Schaap, P. J.
Van De Vondervoort, P. J. I.
Culley, D.
Thykaer, J.
Frisvad, J. C.
Nielsen, K. F.
Albang, R.
Albermann, K.
Berka, R. M.
Braus, G. H.
Braus-Stromeyer, S. A.
Corrochano, L. M.
Dai, Z.
Van Dijck, P. W. M.
Hofmann, G.
Lasure, L. L.
Magnuson, J. K.
Menke, H.
Meijer, M.
Meijer, S. L.
Nielsen, J. B.
Nielsen, M. L.
Van Ooyen, A. J. J.
Pel, H. J.
Poulsen, L.
Samson, R. A.
Stam, H.
Tsang, A.
Van Den Brink, J. M.
Atkins, A.
Aerts, A.
Shapiro, H.
Pangilinan, J.
Salamov, A.
Lou, Y.
Lindquist, E.
Lucas, S.
Grimwood, J.
Grigoriev, I. V.
Kubicek, C. P.
Martinez, D.
Van Peij, N. N. M. E.
Roubos, J. A.
Nielsen, Jens B
Baker, S. E.

January 2011

The filamentous fungus Aspergillus niger exhibits great diversity in its phenotype. It is found glob...

Genome sequencing and analysis of the versatile cell factory Aspergillus niger CBS 513.88

Pel, H.J.
Winde, J.H. de
Archer, D.B.
Dyer, P.S.
Hofmann, G.
Schaap, P.J.
Turner, G.
Vries, R.P. de
Albang, R.
Albermann, K.
Andersen, M.R.
Bendtsen, J.D.
Benen, J.A.
Berg, M. van den
Breestraat, S.
Caddick, M.X.
Contreras, R.
Cornell, M.
Coutinho, P.M.
Danchin, E.G.
Debets, A.J.
Dekker, P.
Dijck, P.W. van
Dijk, A. van
Dijkhuizen, L.
Driessen, A.J.
D'Enfert, C.
Geysens, S.
Goosen, C.
Groot, G.S.
Groot, P.W. de
Guillemette, T.
Henrissat, B.
Herweijer, M.
Hombergh, J.P. van den
Hondel, C.A. van den
Heijden, R.T.J.M. van der
Kaaij, R.M. van der
Klis, F.M.
Kools, H.J.
Kubicek, C.P.
Kuyk, P.A. van
Lauber, J.
Lu, X.
Maarel, M.J. van der
Meulenberg, R.
Menke, H.
Mortimer, M.A.
Nielsen, J.
Oliver, S.G.
Olsthoorn, M.
Pal, K.
Peij, N.N. van
Ram, A.F.
Rinas, U.
Roubos, J.A.
Sagt, C.M.
Schmoll, M.
Sun, J.
Ussery, D.
Varga, J.
Vervecken, W.
Vondervoort, P.J. van de
Wedler, H.
Wosten, H.A.
Zeng, A.P.
Ooyen, A.J. van
Visser, J.C.
Stam, H.

January 2007

Contains fulltext : 51722.pdf (publisher's version ) (Closed access)The filamentou...

Systemic analysis of the response of Aspergillus niger to ambient pH

Andersen, M. R.
Lehmann, L.
Nielsen, Jens B

January 2009

Background: The filamentous fungus Aspergillus niger is an exceptionally efficient producer of organ...

INVESTIGATION Identification of a Classical Mutant in the Industrial Host Aspergillus niger by Systems Genetics: LaeA Is Required for Citric Acid Production and Regulates

August 2016

ABSTRACT The asexual filamentous fungus Aspergillus niger is an important industrial cell factory fo...

MOESM11 of Transcriptomic analysis of Aspergillus niger strains reveals the mechanism underlying high citric acid productivity

Abstract

Extracted data

MOESM11 of Transcriptomic analysis of Aspergillus niger strains reveals the mechanism underlying high citric acid productivity

Abstract

Extracted data

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