Additional file 1: of Phylogenomic analysis of Apoidea sheds new light on the sister group of bees

Table S1. Assembly statistics and number of identified single-copy genes in the analyzed enriched data set. Table S2. Assembly statistics and number of identified single-copy genes in the analyzed transcriptomes. Table S3. Taxa with unstable phylogenetic position (a.k.a. rogue taxa) when analyzing the amino acid and the nucleotide supermatrices. Table S4. Families, subfamilies and tribes included in this study. Table S5. Detailed species list used for target DNA enrichment, including information on identity, sex and concentration of extracted genomic DNA. Table S6. Published transcriptomes of apoid wasps and bees included in the present investigation. Table S7. Official gene sets exploited to identify orthologous transcripts and enriched DNA of target single-copy protein-coding genes. Table S8. Information on required taxa when removing data blocks with poor taxonomic coverage. Table S9. Description, origin, phylogenetic position and age of fossils used to calibrate divergence times. Table S10. Four-cluster Likelihood (FcLM) results on amino acid and nucleotide level when testing the phylogenetic placement of Ammoplanina and Mellininae. Proportions of quartets, that map to specific areas in the 2D-simplex graph. (PDF 230Â kb