Additional file 3: of A transposable element annotation pipeline and expression analysis reveal potentially active elements in the microalga Tisochrysis lutea

Additional file 3: of Comparative mitochondrial genomics of cryptophyte algae: gene shuffling and dynamic mobile genetic elements

Jong Kim (234077)
Hwan Yoon (3493268)
Gangman Yi (750563)
Woongghi Shin (750566)
John Archibald (3571538)

April 2018

Figure S3. All tRNAs wih palindromic sequences in cryptophyte mitochondrial genomes. The non-tRNA se...

Additional file 1: Table S1. of Mariner transposons are sailing in the genome of the blood-sucking bug Rhodnius prolixus

Jonathan FilĂŠe (3518579)
Jacques-Deric Rouault (311751)
Myriam Harry (611103)
AurĂŠlie Hua-Van (3518582)

December 2015

Transposases sequences used as queries in the TBLASTN search (GI, family and subfamily) with the num...

Additional file 1: of Phylogenomic analysis reveals genome-wide purifying selection on TBE transposons in the ciliate Oxytricha

Xiao Chen (260187)
Laura Landweber (3530819)

January 2016

Annotation of TBE sequences in Oxytricha micronuclear genome in gff format. (GFF 2.38 mb

Additional file 4: of A transposable element annotation pipeline and expression analysis reveal potentially active elements in the microalga Tisochrysis lutea

Jérémy Berthelier (5245820)
Nathalie Casse (2359243)
Nicolas Daccord (4234696)
Véronique Jamilloux (558838)
Bruno Saint-Jean (516492)
Grégory Carrier (178319)

May 2018

Sequences alignment of the peptides matching on the predicted TE proteins. This file contains the al...

Additional file 2: of A transposable element annotation pipeline and expression analysis reveal potentially active elements in the microalga Tisochrysis lutea

Jérémy Berthelier (5245820)
Nathalie Casse (2359243)
Nicolas Daccord (4234696)
Véronique Jamilloux (558838)
Bruno Saint-Jean (516492)
Grégory Carrier (178319)

May 2018

Percentage of identity between copies of the expressed TE families. This file lists the percentage o...

Additional file 1: of A transposable element annotation pipeline and expression analysis reveal potentially active elements in the microalga Tisochrysis lutea

Jérémy Berthelier (5245820)
Nathalie Casse (2359243)
Nicolas Daccord (4234696)
Véronique Jamilloux (558838)
Bruno Saint-Jean (516492)
Grégory Carrier (178319)

May 2018

Additional supporting information. This file contains the additional supporting figures, tables, res...

A transposable element annotation pipeline and expression analysis reveal potentially active elements in the microalga Tisochrysis lutea

Casse, Nathalie
Daccord, Nicolas
Jamilloux, Véronique
Saint-Jean, Bruno
Carrier, Grégory

January 2018

Background: Transposable elements (TEs) are mobile DNA sequences known as drivers of genome evolutio...

A transposable element annotation pipeline and expression analysis reveal potentially active elements in the microalga Tisochrysis lutea

Jérémy Berthelier
Nathalie Casse
Nicolas Daccord
Véronique Jamilloux
Bruno Saint-Jean
Grégory Carrier

May 2018

Abstract Background Transposable elements (TEs) are mobile DNA sequences known as drivers of genome ...

Additional file 5: of A transposable element annotation pipeline and expression analysis reveal potentially active elements in the microalga Tisochrysis lutea

Jérémy Berthelier (5245820)
Nathalie Casse (2359243)
Nicolas Daccord (4234696)
Véronique Jamilloux (558838)
Bruno Saint-Jean (516492)
Grégory Carrier (178319)

May 2018

List of non-inventoried sequences added to the databanks used by the pipeline PiRATE. This file list...

Activity of mobile elements in Tisochrysis lutea in a context of microalgae domestication

Berthelier, Jérémy

December 2018

Les éléments transposables (ETs) sont des acteurs majeurs de la dynamique des génomes. Ils regroupen...

Draft genomes and phenotypic characterization of Tisochrysis lutea strains. Toward the production of domesticated strains with high added value

Baroukh, Caroline
Rouxel, Catherine
Duboscq-Bidot, Laëtitia
Schreiber, Nathalie
Bougaran, Gaël

January 2018

Tisochrysis lutea is a microalga species currently used in aquaculture as a feed for shellfish, oyst...

Draft genomes and phenotypic characterization of Tisochrysis lutea strains. Toward the production of domesticated strains with high added value

Carrier, Gregory
Baroukh, Caroline
Rouxel, Catherine
Duboscq-Bidot, Laetitia
Schreiber, Nathalie
Bougaran, Gaël

January 2018

International audienceTisochrysis lutea is a microalga species currently used in aquaculture as a fe...

Draft genomes and phenotypic characterization of Tisochrysis lutea strains. Toward the production of domesticated strains with high added value

Carrier, Gregory
Baroukh, Caroline
Rouxel, Catherine
Duboscq-Bidot, Laetitia
Schreiber, Nathalie
Bougaran, Gaël

January 2018

International audienceTisochrysis lutea is a microalga species currently used in aquaculture as a fe...

Transposable element detection and annotation in Microbotryum species genomes

Marine Duhamel (13340610)

August 2023

gff3 files of transposable element sequences detected in the haploid genomes of 16 Microbotryum spec...

Draft genomes and phenotypic characterization of Tisochrysis lutea strains. Toward the production of domesticated strains with high added value

Carrier, Gregory
Baroukh, Caroline
Rouxel, Catherine
Duboscq-Bidot, Laetitia
Schreiber, Nathalie
Bougaran, Gaël

January 2018

International audienceTisochrysis lutea is a microalga species currently used in aquaculture as a fe...

Additional file 3: of Comparative mitochondrial genomics of cryptophyte algae: gene shuffling and dynamic mobile genetic elements

Jong Kim (234077)
Hwan Yoon (3493268)
Gangman Yi (750563)
Woongghi Shin (750566)
John Archibald (3571538)

April 2018

Figure S3. All tRNAs wih palindromic sequences in cryptophyte mitochondrial genomes. The non-tRNA se...

Additional file 1: Table S1. of Mariner transposons are sailing in the genome of the blood-sucking bug Rhodnius prolixus

Jonathan FilĂŠe (3518579)
Jacques-Deric Rouault (311751)
Myriam Harry (611103)
AurĂŠlie Hua-Van (3518582)

December 2015

Transposases sequences used as queries in the TBLASTN search (GI, family and subfamily) with the num...

Additional file 1: of Phylogenomic analysis reveals genome-wide purifying selection on TBE transposons in the ciliate Oxytricha

Xiao Chen (260187)
Laura Landweber (3530819)

January 2016

Annotation of TBE sequences in Oxytricha micronuclear genome in gff format. (GFF 2.38 mb

Additional file 4: of A transposable element annotation pipeline and expression analysis reveal potentially active elements in the microalga Tisochrysis lutea

Jérémy Berthelier (5245820)
Nathalie Casse (2359243)
Nicolas Daccord (4234696)
Véronique Jamilloux (558838)
Bruno Saint-Jean (516492)
Grégory Carrier (178319)

May 2018

Sequences alignment of the peptides matching on the predicted TE proteins. This file contains the al...

Additional file 2: of A transposable element annotation pipeline and expression analysis reveal potentially active elements in the microalga Tisochrysis lutea

Jérémy Berthelier (5245820)
Nathalie Casse (2359243)
Nicolas Daccord (4234696)
Véronique Jamilloux (558838)
Bruno Saint-Jean (516492)
Grégory Carrier (178319)

May 2018

Percentage of identity between copies of the expressed TE families. This file lists the percentage o...

Additional file 1: of A transposable element annotation pipeline and expression analysis reveal potentially active elements in the microalga Tisochrysis lutea

Jérémy Berthelier (5245820)
Nathalie Casse (2359243)
Nicolas Daccord (4234696)
Véronique Jamilloux (558838)
Bruno Saint-Jean (516492)
Grégory Carrier (178319)

May 2018

Additional supporting information. This file contains the additional supporting figures, tables, res...

A transposable element annotation pipeline and expression analysis reveal potentially active elements in the microalga Tisochrysis lutea

Casse, Nathalie
Daccord, Nicolas
Jamilloux, Véronique
Saint-Jean, Bruno
Carrier, Grégory

January 2018

Background: Transposable elements (TEs) are mobile DNA sequences known as drivers of genome evolutio...

A transposable element annotation pipeline and expression analysis reveal potentially active elements in the microalga Tisochrysis lutea

Jérémy Berthelier
Nathalie Casse
Nicolas Daccord
Véronique Jamilloux
Bruno Saint-Jean
Grégory Carrier

May 2018

Abstract Background Transposable elements (TEs) are mobile DNA sequences known as drivers of genome ...

Additional file 5: of A transposable element annotation pipeline and expression analysis reveal potentially active elements in the microalga Tisochrysis lutea

Jérémy Berthelier (5245820)
Nathalie Casse (2359243)
Nicolas Daccord (4234696)
Véronique Jamilloux (558838)
Bruno Saint-Jean (516492)
Grégory Carrier (178319)

May 2018

List of non-inventoried sequences added to the databanks used by the pipeline PiRATE. This file list...

Activity of mobile elements in Tisochrysis lutea in a context of microalgae domestication

Berthelier, Jérémy

December 2018

Les éléments transposables (ETs) sont des acteurs majeurs de la dynamique des génomes. Ils regroupen...

Draft genomes and phenotypic characterization of Tisochrysis lutea strains. Toward the production of domesticated strains with high added value

Baroukh, Caroline
Rouxel, Catherine
Duboscq-Bidot, Laëtitia
Schreiber, Nathalie
Bougaran, Gaël

January 2018

Tisochrysis lutea is a microalga species currently used in aquaculture as a feed for shellfish, oyst...

Draft genomes and phenotypic characterization of Tisochrysis lutea strains. Toward the production of domesticated strains with high added value

Carrier, Gregory
Baroukh, Caroline
Rouxel, Catherine
Duboscq-Bidot, Laetitia
Schreiber, Nathalie
Bougaran, Gaël

January 2018

International audienceTisochrysis lutea is a microalga species currently used in aquaculture as a fe...

Draft genomes and phenotypic characterization of Tisochrysis lutea strains. Toward the production of domesticated strains with high added value

Carrier, Gregory
Baroukh, Caroline
Rouxel, Catherine
Duboscq-Bidot, Laetitia
Schreiber, Nathalie
Bougaran, Gaël

January 2018

International audienceTisochrysis lutea is a microalga species currently used in aquaculture as a fe...

Transposable element detection and annotation in Microbotryum species genomes

Marine Duhamel (13340610)

August 2023

gff3 files of transposable element sequences detected in the haploid genomes of 16 Microbotryum spec...

Draft genomes and phenotypic characterization of Tisochrysis lutea strains. Toward the production of domesticated strains with high added value

Carrier, Gregory
Baroukh, Caroline
Rouxel, Catherine
Duboscq-Bidot, Laetitia
Schreiber, Nathalie
Bougaran, Gaël

January 2018

International audienceTisochrysis lutea is a microalga species currently used in aquaculture as a fe...

Additional file 3: of Comparative mitochondrial genomics of cryptophyte algae: gene shuffling and dynamic mobile genetic elements

Jong Kim (234077)
Hwan Yoon (3493268)
Gangman Yi (750563)
Woongghi Shin (750566)
John Archibald (3571538)

April 2018

Figure S3. All tRNAs wih palindromic sequences in cryptophyte mitochondrial genomes. The non-tRNA se...

Additional file 1: Table S1. of Mariner transposons are sailing in the genome of the blood-sucking bug Rhodnius prolixus

Jonathan FilĂŠe (3518579)
Jacques-Deric Rouault (311751)
Myriam Harry (611103)
AurĂŠlie Hua-Van (3518582)

December 2015

Transposases sequences used as queries in the TBLASTN search (GI, family and subfamily) with the num...

Additional file 1: of Phylogenomic analysis reveals genome-wide purifying selection on TBE transposons in the ciliate Oxytricha

Xiao Chen (260187)
Laura Landweber (3530819)

January 2016

Annotation of TBE sequences in Oxytricha micronuclear genome in gff format. (GFF 2.38 mb

Additional file 3: of A transposable element annotation pipeline and expression analysis reveal potentially active elements in the microalga Tisochrysis lutea

Abstract

Extracted data

Additional file 3: of A transposable element annotation pipeline and expression analysis reveal potentially active elements in the microalga Tisochrysis lutea

Abstract

Extracted data

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