Replicon-dependent transcriptional variations between CCBAU45436 and CCBAU25509 under free-living and symbiotic conditions.

<p>(<b>A</b>) Enrichment analyses of differentially expressed genes (Log₂R > 1.732, FDR < 0.001) between CCBAU45436 and CCBAU25509 under free-living and symbiotic conditions for the hierarchical core/accessory subsets. (<b>B</b>) Enrichment analyses of differentially expressed genes between CCBAU45436 and CCBAU25509 under free-living and symbiotic conditions for each replicon. The black bars represent the background ratios of 45436–25509 shared genes in each of the hierarchical core/accessory subsets or replicons. Significant enrichment and/or depletion are indicated by stars (*, <i>P</i> < 0.05; **, <i>P</i> < 0.01; ***, <i>P</i> < 0.001; Pearson’s chi-square test). All analyses of this figure are based on datasets without multi-copy genes and strain-specific genes.