Additional file 1: of Characteristic profiles of DNA epigenetic modifications in colon cancer and its predisposing conditionsâbenign adenomas and inflammatory bowel disease

Additional file 1: of Discovery of a diagnostic biomarker for colon cancer through proteomic profiling of small extracellular vesicles

Chan-Hyeong Lee (5759486)
Eun-Ju Im (3772540)
Pyong-Gon Moon (3772543)
Moon-Chang Baek (267704)

November 2018

Table S1. Protein list of small-EVs from HCT-116 and HT-29 CC cell lines. (XLSX 45 kb

Additional file 1 of Circulating cell-free DNA methylation patterns as non-invasive biomarkers to monitor colorectal cancer treatment efficacy without referencing primary site mutation profiles

Kazuya Yasui (10874552)
Toshiaki Toshima (10874555)
Ryo Inada (13980987)
Yuzo Umeda (762721)
Shuya Yano (157763)
Hiroaki Tanioka (7491530)
Akihiro Nyuya (4764216)
Toshiyoshi Fujiwara (157767)
Takeshi Yamada (160800)
Yoshio Naomoto (360090)
Ajay Goel (130080)
Takeshi Nagasaka (8474)

January 2024

Additional file 1: Fig. S1. Study Flow Charts. Fig. S2. Representative Hi-SA results for ccfDNA. Fig...

Additional file 1: of Associations of single nucleotide polymorphisms with mucinous colorectal cancer: genome-wide common variant and gene-based rare variant analyses

Michelle Penney (5384228)
Patrick Parfrey (148810)
Sevtap Savas (148793)
Yildiz Yilmaz (5384225)

June 2018

Table S1. Top ten most significant common SNPs identified based on the univariable analyses and the ...

Additional file 3: of Characteristic profiles of DNA epigenetic modifications in colon cancer and its predisposing conditionsâbenign adenomas and inflammatory bowel disease

Tomasz Dziaman (677130)
Daniel Gackowski (433277)
Jolanta Guz (433276)
Kinga Linowiecka (5319692)
Magdalena Bodnar (507883)
Marta Starczak (837314)
Ewelina Zarakowska (433280)
Martyna Modrzejewska (837315)
Anna Szpila (433282)
Justyna Szpotan (5319680)
Maciej Gawronski (5319686)
Anna Labejszo (4633510)
Ariel Liebert (5319683)
Zbigniew Banaszkiewicz (677133)
Maria Klopocka (5319689)
Marek Foksinski (433278)
Andrzej Marszalek (507884)
Ryszard Olinski (433285)

May 2018

Table S3. Primers and short hydrolysis probes used for TETs and AID mRNA expression analysis. (PDF 4...

Additional file 1: of IL-33 facilitates proliferation of colorectal cancer dependent onÂ COX2/PGE2

Yongkui Li (5642561)
Jie Shi (130059)
Shanshan Qi (504817)
Jian Zhang (1682)
Dong Peng (1496416)
Zhenzhen Chen (490585)
Guobin Wang (322861)
Zheng Wang (25883)
Lin Wang (11986)

August 2018

Table S1. Characteristics of the colorectal cancer patients analyzed in this study. Table S2. The pr...

Additional file 1: of Inflammation-induced DNA methylation of DNA polymerase gamma alters the metabolic profile of colon tumors

Ashley Maiuri (5495231)
Hongde Li (1930807)
Barry Stein (207538)
Jason Tennessen (5495234)
Heather O’Hagan (5495258)

July 2018

Figure S1. Additional gene and protein expression in mock and ETBF-induced tumors. A) Gene expressio...

Additional file 1 of Epigenome-wide discovery and evaluation of leukocyte DNA methylation markers for the detection of colorectal cancer in a screening setting

Jonathan Heiss (3811195)
Hermann Brenner (63649)

March 2017

Supplement.pdf. Includes Figure S1, PubMed search terms, Table S1 and supplementary references. (PDF...

Additional file 1: of Gene promoter and exon DNA methylation changes in colon cancer development – mRNA expression and tumor mutation alterations

Béla Molnár (123745)
Orsolya Galamb (123720)
Bálint Péterfia (130981)
Barnabás Wichmann (123721)
István Csabai (130985)
András Bodor (439486)
Alexandra Kalmár (123738)
Krisztina Szigeti (5454470)
Barbara Barták (764299)
Zsófia Nagy (3515417)
Gábor Valcz (466332)
Árpád Patai (785267)
Péter Igaz (628519)
Zsolt Tulassay (123741)

June 2018

Table S1A. Top50 hypermethylated DMRs in CRC versus NAT comparison. Table S1B. Top50 hypomethylated ...

Additional file 1: of Next-generation sequencing analysis of receptor-type tyrosine kinase genes in surgically resected colon cancer: identification of gain-of-function mutations in the RET proto-oncogene

Duarte Mendes Oliveira (849198)
Katia Grillone (5113460)
Chiara Mignogna (849203)
Valentina De Falco (141865)
Carmelo Laudanna (213505)
Flavia Biamonte (713540)
Rosa Locane (5113457)
Francesco Corcione (5113454)
Massimiliano Fabozzi (5113451)
Rosario Sacco (575749)
Giuseppe Viglietto (184159)
Donatella Malanga (184157)
Antonia Rizzuto (849202)

April 2018

Table S1. Clinical-pathological characteristics of the 37 colon cancer patients included in the stud...

Additional file 1: of Circulating tumour DNA for monitoring colorectal cancerâa prospective cohort study to assess relationship to tissue methylation, cancer characteristics and surgical resection

Erin Symonds (3426014)
Susanne Pedersen (3426032)
David Murray (34352)
Maher Jedi (5212688)
Susan Byrne (464523)
Philippa Rabbitt (5229419)
Rohan Baker (3426029)
Dawn Bastin (5229422)
Graeme Young (3416597)

May 2018

Table S1. Characteristics of patients included in analyses. Table S2. Concordance between detection ...

Additional file 1: of Multilevel genomics of colorectal cancers with microsatellite instabilityâclinical impact of JAK1 mutations and consensus molecular subtype 1

Anita Sveen (207182)
Bjarne Johannessen (4046060)
Torstein Tengs (248216)
Stine Danielsen (4046051)
Ina Eilertsen (4046048)
Guro Lind (4046042)
Kaja Berg (4046057)
Edward Leithe (3116385)
Leonardo Meza-Zepeda (3537899)
Enric Domingo (225150)
Ola Myklebost (123307)
David Kerr (3529253)
Ian Tomlinson (146463)
Arild Nesbakken (207185)
Rolf Skotheim (4046054)
Ragnhild Lothe (4046045)

May 2017

Supplementary Tables. An Excel file containing Supplementary Tables S1-S12. (XLSX 8497 kb

Additional file 1: of Exome scale map of genetic alterations promoting metastasis in colorectal cancer

Krzysztof Goryca (240597)
Maria Kulecka (2503180)
Agnieszka Paziewska (170076)
Michalina Dabrowska (800221)
Marta Grzelak (5771918)
Magdalena Skrzypczak (240596)
Krzysztof Ginalski (8940)
Andrzej Mroz (5771921)
Andrzej Rutkowski (170103)
Katarzyna Paczkowska (5771924)
Michal Mikula (240599)
Jerzy Ostrowski (170111)

September 2018

Table S1. Sequencing parameters for 3 samples with the highest and 3 samples with the lowest sequenc...

Additional file 2: of Gene promoter and exon DNA methylation changes in colon cancer development – mRNA expression and tumor mutation alterations

Béla Molnár (123745)
Orsolya Galamb (123720)
Bálint Péterfia (130981)
Barnabás Wichmann (123721)
István Csabai (130985)
András Bodor (439486)
Alexandra Kalmár (123738)
Krisztina Szigeti (5454470)
Barbara Barták (764299)
Zsófia Nagy (3515417)
Gábor Valcz (466332)
Árpád Patai (785267)
Péter Igaz (628519)
Zsolt Tulassay (123741)

June 2018

Figure S1. Box plots of significant DMRs in TP53 pathway gene promoters between CRC and NAT samples....

Additional file 2: of Comparative proteogenomic analysis of right-sided colon cancer, left-sided colon cancer and rectal cancer reveals distinct mutational profiles

Robin Imperial (6113699)
Zaheer Ahmed (2471398)
Omer Toor (6113702)
Cihat ErdoÄan (6113705)
Ateeq Khaliq (6113708)
Paul Case (6113711)
James Case (6113714)
Kevin Kennedy (40172)
Lee Cummings (6113717)
Niklas Melton (6113720)
Shahzad Raza (6113723)
Banu Diri (4598581)
Ramzi Mohammad (3520061)
Bassel El-Rayes (4006997)
Timothy Pluard (6113726)
Arif Hussain (226527)
Janakiraman Subramanian (5150669)
Ashiq Masood (6113729)

December 2018

Inclusion and exclusion criteria for somatic mutation analysis. MSI-H, POLE mutation samples, rectos...

Additional file 1: of Differential expression of Cosmc, T-synthase and mucins in Tn-positive colorectal cancers

Xiaodong Sun (166163)
Tongzhong Ju (52651)
Richard Cummings (1822642)

August 2018

Genetic alterations of Cosmc in cancer cell lines and specimens. A Table containing the names of the...

Additional file 1: of Discovery of a diagnostic biomarker for colon cancer through proteomic profiling of small extracellular vesicles

Chan-Hyeong Lee (5759486)
Eun-Ju Im (3772540)
Pyong-Gon Moon (3772543)
Moon-Chang Baek (267704)

November 2018

Table S1. Protein list of small-EVs from HCT-116 and HT-29 CC cell lines. (XLSX 45 kb

Additional file 1 of Circulating cell-free DNA methylation patterns as non-invasive biomarkers to monitor colorectal cancer treatment efficacy without referencing primary site mutation profiles

Kazuya Yasui (10874552)
Toshiaki Toshima (10874555)
Ryo Inada (13980987)
Yuzo Umeda (762721)
Shuya Yano (157763)
Hiroaki Tanioka (7491530)
Akihiro Nyuya (4764216)
Toshiyoshi Fujiwara (157767)
Takeshi Yamada (160800)
Yoshio Naomoto (360090)
Ajay Goel (130080)
Takeshi Nagasaka (8474)

January 2024

Additional file 1: Fig. S1. Study Flow Charts. Fig. S2. Representative Hi-SA results for ccfDNA. Fig...

Additional file 1: of Associations of single nucleotide polymorphisms with mucinous colorectal cancer: genome-wide common variant and gene-based rare variant analyses

Michelle Penney (5384228)
Patrick Parfrey (148810)
Sevtap Savas (148793)
Yildiz Yilmaz (5384225)

June 2018

Table S1. Top ten most significant common SNPs identified based on the univariable analyses and the ...

Additional file 3: of Characteristic profiles of DNA epigenetic modifications in colon cancer and its predisposing conditionsâbenign adenomas and inflammatory bowel disease

Tomasz Dziaman (677130)
Daniel Gackowski (433277)
Jolanta Guz (433276)
Kinga Linowiecka (5319692)
Magdalena Bodnar (507883)
Marta Starczak (837314)
Ewelina Zarakowska (433280)
Martyna Modrzejewska (837315)
Anna Szpila (433282)
Justyna Szpotan (5319680)
Maciej Gawronski (5319686)
Anna Labejszo (4633510)
Ariel Liebert (5319683)
Zbigniew Banaszkiewicz (677133)
Maria Klopocka (5319689)
Marek Foksinski (433278)
Andrzej Marszalek (507884)
Ryszard Olinski (433285)

May 2018

Table S3. Primers and short hydrolysis probes used for TETs and AID mRNA expression analysis. (PDF 4...

Additional file 1: of IL-33 facilitates proliferation of colorectal cancer dependent onÂ COX2/PGE2

Yongkui Li (5642561)
Jie Shi (130059)
Shanshan Qi (504817)
Jian Zhang (1682)
Dong Peng (1496416)
Zhenzhen Chen (490585)
Guobin Wang (322861)
Zheng Wang (25883)
Lin Wang (11986)

August 2018

Table S1. Characteristics of the colorectal cancer patients analyzed in this study. Table S2. The pr...

Additional file 1: of Inflammation-induced DNA methylation of DNA polymerase gamma alters the metabolic profile of colon tumors

Ashley Maiuri (5495231)
Hongde Li (1930807)
Barry Stein (207538)
Jason Tennessen (5495234)
Heather O’Hagan (5495258)

July 2018

Figure S1. Additional gene and protein expression in mock and ETBF-induced tumors. A) Gene expressio...

Additional file 1 of Epigenome-wide discovery and evaluation of leukocyte DNA methylation markers for the detection of colorectal cancer in a screening setting

Jonathan Heiss (3811195)
Hermann Brenner (63649)

March 2017

Supplement.pdf. Includes Figure S1, PubMed search terms, Table S1 and supplementary references. (PDF...

Additional file 1: of Gene promoter and exon DNA methylation changes in colon cancer development – mRNA expression and tumor mutation alterations

Béla Molnár (123745)
Orsolya Galamb (123720)
Bálint Péterfia (130981)
Barnabás Wichmann (123721)
István Csabai (130985)
András Bodor (439486)
Alexandra Kalmár (123738)
Krisztina Szigeti (5454470)
Barbara Barták (764299)
Zsófia Nagy (3515417)
Gábor Valcz (466332)
Árpád Patai (785267)
Péter Igaz (628519)
Zsolt Tulassay (123741)

June 2018

Table S1A. Top50 hypermethylated DMRs in CRC versus NAT comparison. Table S1B. Top50 hypomethylated ...

Additional file 1: of Next-generation sequencing analysis of receptor-type tyrosine kinase genes in surgically resected colon cancer: identification of gain-of-function mutations in the RET proto-oncogene

Duarte Mendes Oliveira (849198)
Katia Grillone (5113460)
Chiara Mignogna (849203)
Valentina De Falco (141865)
Carmelo Laudanna (213505)
Flavia Biamonte (713540)
Rosa Locane (5113457)
Francesco Corcione (5113454)
Massimiliano Fabozzi (5113451)
Rosario Sacco (575749)
Giuseppe Viglietto (184159)
Donatella Malanga (184157)
Antonia Rizzuto (849202)

April 2018

Table S1. Clinical-pathological characteristics of the 37 colon cancer patients included in the stud...

Additional file 1: of Circulating tumour DNA for monitoring colorectal cancerâa prospective cohort study to assess relationship to tissue methylation, cancer characteristics and surgical resection

Erin Symonds (3426014)
Susanne Pedersen (3426032)
David Murray (34352)
Maher Jedi (5212688)
Susan Byrne (464523)
Philippa Rabbitt (5229419)
Rohan Baker (3426029)
Dawn Bastin (5229422)
Graeme Young (3416597)

May 2018

Table S1. Characteristics of patients included in analyses. Table S2. Concordance between detection ...

Additional file 1: of Multilevel genomics of colorectal cancers with microsatellite instabilityâclinical impact of JAK1 mutations and consensus molecular subtype 1

Anita Sveen (207182)
Bjarne Johannessen (4046060)
Torstein Tengs (248216)
Stine Danielsen (4046051)
Ina Eilertsen (4046048)
Guro Lind (4046042)
Kaja Berg (4046057)
Edward Leithe (3116385)
Leonardo Meza-Zepeda (3537899)
Enric Domingo (225150)
Ola Myklebost (123307)
David Kerr (3529253)
Ian Tomlinson (146463)
Arild Nesbakken (207185)
Rolf Skotheim (4046054)
Ragnhild Lothe (4046045)

May 2017

Supplementary Tables. An Excel file containing Supplementary Tables S1-S12. (XLSX 8497 kb

Additional file 1: of Exome scale map of genetic alterations promoting metastasis in colorectal cancer

Krzysztof Goryca (240597)
Maria Kulecka (2503180)
Agnieszka Paziewska (170076)
Michalina Dabrowska (800221)
Marta Grzelak (5771918)
Magdalena Skrzypczak (240596)
Krzysztof Ginalski (8940)
Andrzej Mroz (5771921)
Andrzej Rutkowski (170103)
Katarzyna Paczkowska (5771924)
Michal Mikula (240599)
Jerzy Ostrowski (170111)

September 2018

Table S1. Sequencing parameters for 3 samples with the highest and 3 samples with the lowest sequenc...

Additional file 2: of Gene promoter and exon DNA methylation changes in colon cancer development – mRNA expression and tumor mutation alterations

Béla Molnár (123745)
Orsolya Galamb (123720)
Bálint Péterfia (130981)
Barnabás Wichmann (123721)
István Csabai (130985)
András Bodor (439486)
Alexandra Kalmár (123738)
Krisztina Szigeti (5454470)
Barbara Barták (764299)
Zsófia Nagy (3515417)
Gábor Valcz (466332)
Árpád Patai (785267)
Péter Igaz (628519)
Zsolt Tulassay (123741)

June 2018

Figure S1. Box plots of significant DMRs in TP53 pathway gene promoters between CRC and NAT samples....

Additional file 2: of Comparative proteogenomic analysis of right-sided colon cancer, left-sided colon cancer and rectal cancer reveals distinct mutational profiles

Robin Imperial (6113699)
Zaheer Ahmed (2471398)
Omer Toor (6113702)
Cihat ErdoÄan (6113705)
Ateeq Khaliq (6113708)
Paul Case (6113711)
James Case (6113714)
Kevin Kennedy (40172)
Lee Cummings (6113717)
Niklas Melton (6113720)
Shahzad Raza (6113723)
Banu Diri (4598581)
Ramzi Mohammad (3520061)
Bassel El-Rayes (4006997)
Timothy Pluard (6113726)
Arif Hussain (226527)
Janakiraman Subramanian (5150669)
Ashiq Masood (6113729)

December 2018

Inclusion and exclusion criteria for somatic mutation analysis. MSI-H, POLE mutation samples, rectos...

Additional file 1: of Differential expression of Cosmc, T-synthase and mucins in Tn-positive colorectal cancers

Xiaodong Sun (166163)
Tongzhong Ju (52651)
Richard Cummings (1822642)

August 2018

Genetic alterations of Cosmc in cancer cell lines and specimens. A Table containing the names of the...

Additional file 1: of Discovery of a diagnostic biomarker for colon cancer through proteomic profiling of small extracellular vesicles

Chan-Hyeong Lee (5759486)
Eun-Ju Im (3772540)
Pyong-Gon Moon (3772543)
Moon-Chang Baek (267704)

November 2018

Table S1. Protein list of small-EVs from HCT-116 and HT-29 CC cell lines. (XLSX 45 kb

Additional file 1 of Circulating cell-free DNA methylation patterns as non-invasive biomarkers to monitor colorectal cancer treatment efficacy without referencing primary site mutation profiles

Kazuya Yasui (10874552)
Toshiaki Toshima (10874555)
Ryo Inada (13980987)
Yuzo Umeda (762721)
Shuya Yano (157763)
Hiroaki Tanioka (7491530)
Akihiro Nyuya (4764216)
Toshiyoshi Fujiwara (157767)
Takeshi Yamada (160800)
Yoshio Naomoto (360090)
Ajay Goel (130080)
Takeshi Nagasaka (8474)

January 2024

Additional file 1: Fig. S1. Study Flow Charts. Fig. S2. Representative Hi-SA results for ccfDNA. Fig...

Additional file 1: of Associations of single nucleotide polymorphisms with mucinous colorectal cancer: genome-wide common variant and gene-based rare variant analyses

Michelle Penney (5384228)
Patrick Parfrey (148810)
Sevtap Savas (148793)
Yildiz Yilmaz (5384225)

June 2018

Table S1. Top ten most significant common SNPs identified based on the univariable analyses and the ...

Additional file 1: of Characteristic profiles of DNA epigenetic modifications in colon cancer and its predisposing conditionsâbenign adenomas and inflammatory bowel disease

Abstract

Extracted data

Additional file 1: of Characteristic profiles of DNA epigenetic modifications in colon cancer and its predisposing conditionsâbenign adenomas and inflammatory bowel disease

Abstract

Extracted data

Related items

Related items

Additional file 1: of Characteristic profiles of DNA epigenetic modifications in colon cancer and its predisposing conditionsâbenign adenomas and inflammatory bowel disease

Abstract

Extracted data

Additional file 1: of Characteristic profiles of DNA epigenetic modifications in colon cancer and its predisposing conditionsâbenign adenomas and inflammatory bowel disease

Abstract

Extracted data

Related items

Related items

Additional file 1: of Characteristic profiles of DNA epigenetic modifications in colon cancer and its predisposing conditionsâbenign adenomas and inflammatory bowel disease

Additional file 1: of Characteristic profiles of DNA epigenetic modifications in colon cancer and its predisposing conditionsâbenign adenomas and inflammatory bowel disease