Figure S1. Contaminant OTUs identified in extraction control samples. A. Relative abundance of bacterial taxa in extraction control samples. B. OTUs with greater than 1% relative abundance in extraction controls. These OTUs were excluded from subsequent analyses as they were presumed to be contaminants, except the highlighted Staphylococcus OTU that was found to be the dominant Staphylococcus OTU in the biological samples. C. Relative abundance of the contaminant OTUs (in aggregate) that were excluded from subsequent analyses within each sample site. The contaminant OTUs contributed to a minority of the total OTU abundance in each of the sample sites. OTU = operational taxonomic unit. (PPTX 264 kb
Table S1. Temporal changes in alpha-diversity. Table S2. Temporal changes in bacterial phyla. Table ...
Figure S2. Dirichlet-Multinomial diagnostics including species level OTU relative abundance for each...
Summary table of demographic characteristics, health history, and environmental exposures of study s...
Figure S4. The environmental microbiota of preterm and full-term infants. A. Relative abundance of t...
Figure S3. Skin and oral microbiota of twin pairs. A. Characteristics of the five twin pairs that we...
Table S1. Raw sequencing reads, OTUs, and genera per sample by sample type. (DOCX 13 kb
Heatmap of bacterial abundance in all study specimens. Each vertical line represents the bacterial c...
Table S2. Diagnoses and morbidities among infants admitted to the neonatal intensive care unit. (DOC...
Figure S2. Principal coordinates analysis (PCoA) of samples across body sites. PCoA of infant sample...
Supplementary figures for the manuscript. Figure S1. An example of a gel electrophoresis diagram of ...
Relative abundance of taxonomic groups present at each body site. Taxa included in this display are ...
Additional file 1: Supplemental Figure 1. Overall longitudinal microbiome composition. (A) Compositi...
Comparison of the relative abundance (%) of bacterial mock community at the classification level of ...
Characteristics of vaginal microbiota groups (VMGs) defined using Ward clustering. Figure S2. Bacter...
Figure S1. Fungal contaminants are present in negative extraction controls. (A) Relative abundance o...
Table S1. Temporal changes in alpha-diversity. Table S2. Temporal changes in bacterial phyla. Table ...
Figure S2. Dirichlet-Multinomial diagnostics including species level OTU relative abundance for each...
Summary table of demographic characteristics, health history, and environmental exposures of study s...
Figure S4. The environmental microbiota of preterm and full-term infants. A. Relative abundance of t...
Figure S3. Skin and oral microbiota of twin pairs. A. Characteristics of the five twin pairs that we...
Table S1. Raw sequencing reads, OTUs, and genera per sample by sample type. (DOCX 13 kb
Heatmap of bacterial abundance in all study specimens. Each vertical line represents the bacterial c...
Table S2. Diagnoses and morbidities among infants admitted to the neonatal intensive care unit. (DOC...
Figure S2. Principal coordinates analysis (PCoA) of samples across body sites. PCoA of infant sample...
Supplementary figures for the manuscript. Figure S1. An example of a gel electrophoresis diagram of ...
Relative abundance of taxonomic groups present at each body site. Taxa included in this display are ...
Additional file 1: Supplemental Figure 1. Overall longitudinal microbiome composition. (A) Compositi...
Comparison of the relative abundance (%) of bacterial mock community at the classification level of ...
Characteristics of vaginal microbiota groups (VMGs) defined using Ward clustering. Figure S2. Bacter...
Figure S1. Fungal contaminants are present in negative extraction controls. (A) Relative abundance o...
Table S1. Temporal changes in alpha-diversity. Table S2. Temporal changes in bacterial phyla. Table ...
Figure S2. Dirichlet-Multinomial diagnostics including species level OTU relative abundance for each...
Summary table of demographic characteristics, health history, and environmental exposures of study s...