Additional file 1: of Risk factors and molecular features of sequence type (ST) 131 extended-Spectrum-Î˛-lactamase-producing Escherichia coli in community-onset female genital tract infections

Additional file 3: Figure S1. of Whole genome sequencing of ESBL-producing Escherichia coli isolated from patients, farm waste and canals in Thailand

Chakkaphan Runcharoen (3693409)
Kathy Raven (3571811)
Sandra Reuter (494672)
Teemu Kallonen (219420)
Suporn Paksanont (3693406)
Jeeranan Thammachote (3693403)
Suthatip Anun (3693400)
Beth Blane (3533447)
Julian Parkhill (30393)
Sharon Peacock (3499622)
Narisara Chantratita (33898)

September 2017

Predominant STs of ESBL-producing E. coli isolated from clinical and environmental origins in Thaila...

Additional file 1: Table S1. of Transmission of viruses via our microbiomes

Melissa Ly (787775)
Marcus Jones (1784308)
Shira Abeles (3526082)
Tasha Santiago-Rodriguez (3419813)
Jonathan Gao (3539495)
Ivan Chan (3539498)
Chandrabali Ghose (61491)
David Pride (3419807)

December 2016

Study Subjects. Table S2. Viral homologues within and between households. Table S3. Primer sequences...

Additional file 3: of Genome sequencing of strains of the most prevalent clonal group of O1:K1:H7 Escherichia coli that causes neonatal meningitis in France

Guillaume Geslain (6242036)
André Birgy (6242039)
Sandrine Adiba (362590)
Mélanie Magnan (304705)
Céline Courroux (6242042)
Corinne Levy (317205)
Robert Cohen (317208)
Philippe Bidet (160707)
Stéphane Bonacorsi (75195)

January 2019

Sequencing data information; description: N50, N75, Minimum contig Length, Maximum contig Length, Av...

Additional file 2: of Risk factors and molecular features of sequence type (ST) 131 extended-Spectrum-Î˛-lactamase-producing Escherichia coli in community-onset female genital tract infections

Young Kim (1259280)
Kyungwon Lee (415329)
Jae Chung (5331263)

June 2018

Table S2. Genetic information and antimicrobial susceptibility of Escherichia coli from female genit...

Additional file 2: of Genome sequencing of strains of the most prevalent clonal group of O1:K1:H7 Escherichia coli that causes neonatal meningitis in France

Guillaume Geslain (6242036)
André Birgy (6242039)
Sandrine Adiba (362590)
Mélanie Magnan (304705)
Céline Courroux (6242042)
Corinne Levy (317205)
Robert Cohen (317208)
Philippe Bidet (160707)
Stéphane Bonacorsi (75195)

January 2019

Primers of serotype PCR; description: list of primers and sequences used for serotype PCR. (DOCX 17 ...

Risk factors and molecular features of sequence type (ST) 131 extended-Spectrum-β-lactamase-producing Escherichia coli in community-onset female genital tract infections

Young Ah Kim
Kyungwon Lee
Jae Eun Chung

June 2018

Abstract Background Escherichia coli (E. coli) is known to cause urinary tract infection (UTI) and m...

Additional file 1: of High frequency of hybrid Escherichia coli strains with combined Intestinal Pathogenic Escherichia coli (IPEC) and Extraintestinal Pathogenic Escherichia coli (ExPEC) virulence factors isolated from human faecal samples

BjĂ¸rn-Arne Lindstedt (6032030)
Misti Finton (6032021)
Davide Porcellato (5016440)
Lin Brandal (3571076)

November 2018

PCR primers used in study. Sequences of all PCR-primers used in this study, with references. (DOCX 1...

Additional file 2: of Diversity of virulence level phenotype of hypervirulent Klebsiella pneumoniae from different sequence type lineage

Qiucheng Shi (3233457)
Peng Lan (5699819)
Danyan Huang (5148011)
Xiaoting Hua (435699)
Yan Jiang (12139)
Jiancang Zhou (3233460)
Yunsong Yu (496103)

August 2018

Table S1. PCR primers used for studying Serotype and Virulence-Associated Genes of Klebsiella pneumo...

Additional file 2: of Genome sequences of two closely related strains of Escherichia coli K-12 GM4792

Yan-Cong Zhang (3495206)
Yan Zhang (8098)
Bi-Ru Zhu (3495203)
Bo-Wen Zhang (849406)
Chuan Ni (238144)
Da-Yong Zhang (16644)
Ying Huang (53474)
Erli Pang (416861)
Kui Lin (16645)

December 2015

PCR experiment description. Table S8. The primer sequences for two GM4792 strains. Figure S5. The pr...

Additional file 4: of Genome sequencing of strains of the most prevalent clonal group of O1:K1:H7 Escherichia coli that causes neonatal meningitis in France

Guillaume Geslain (6242036)
André Birgy (6242039)
Sandrine Adiba (362590)
Mélanie Magnan (304705)
Céline Courroux (6242042)
Corinne Levy (317205)
Robert Cohen (317208)
Philippe Bidet (160707)
Stéphane Bonacorsi (75195)

January 2019

166 genes searched by local blast analysis using the NCBI blast tool; description: list of genes sea...

Additional file 1 of Distribution of papG alleles among uropathogenic Escherichia coli from reproductive age women

Timothy Kudinha (647162)
Fanrong Kong (218191)

September 2022

Additional file 1: Table S1. Novel oligonucleotide probes and primers developed for the mPCR/RLB ass...

Additional file 1: of Whole genome sequencing reveals high clonal diversity of Escherichia coli isolated from patients in a tertiary care hospital in Moshi, Tanzania

Tolbert Sonda (3514244)
Happiness Kumburu (3514241)
Marco van Zwetselaar (3514238)
Michael Alifrangis (79967)
Blandina Mmbaga (3639784)
Frank Aarestrup (3514247)
Gibson Kibiki (205459)
Ole Lund (26628)

June 2018

Table S1. A pairwise genome comparison matrix of SNP differences for E. coli ST131. (XLS 34 kb

Additional file 2: of High frequency of hybrid Escherichia coli strains with combined Intestinal Pathogenic Escherichia coli (IPEC) and Extraintestinal Pathogenic Escherichia coli (ExPEC) virulence factors isolated from human faecal samples

BjĂ¸rn-Arne Lindstedt (6032030)
Misti Finton (6032021)
Davide Porcellato (5016440)
Lin Brandal (3571076)

November 2018

The Excel sheet contains VAGs PCR, Phylogenetic PCR and MLVA results for all E. coli strains include...

Additional file 1: of Whole genome analyses of CMY-2-producing Escherichia coli isolates from humans, animals and food in Germany

Michael Pietsch (3317112)
Alexandra Irrgang (2889134)
Nicole Roschanski (599844)
Geovana Brenner Michael (5618447)
Axel Hamprecht (605845)
Heime Rieber (5618456)
Annemarie KĂ¤sbohrer (5618477)
Stefan Schwarz (166988)
Uwe RĂśsler (5618480)
Lothar Kreienbrock (705028)
Yvonne Pfeifer (457305)
Stephan Fuchs (256450)
Guido Werner (28655)

August 2018

Table S1. Characteristics of 164 CMY-2 -producing Escherichia coli isolates from different sources, ...

Genomic attributes of extended-spectrum β-lactamase-producing Escherichia coli isolated from patients in Lebanon.

Tokajian, Sima
Salloum, Tamara
Eisen, Jonathan A
Jospin, Guillaume
Farra, Anna
Mokhbat, Jacques E
Coil, David A

March 2017

AimExtended-spectrum β-lactamase-producing (ESBL) Escherichia coli are a public threat worldwide. Th...

Additional file 3: Figure S1. of Whole genome sequencing of ESBL-producing Escherichia coli isolated from patients, farm waste and canals in Thailand

Chakkaphan Runcharoen (3693409)
Kathy Raven (3571811)
Sandra Reuter (494672)
Teemu Kallonen (219420)
Suporn Paksanont (3693406)
Jeeranan Thammachote (3693403)
Suthatip Anun (3693400)
Beth Blane (3533447)
Julian Parkhill (30393)
Sharon Peacock (3499622)
Narisara Chantratita (33898)

September 2017

Predominant STs of ESBL-producing E. coli isolated from clinical and environmental origins in Thaila...

Additional file 1: Table S1. of Transmission of viruses via our microbiomes

Melissa Ly (787775)
Marcus Jones (1784308)
Shira Abeles (3526082)
Tasha Santiago-Rodriguez (3419813)
Jonathan Gao (3539495)
Ivan Chan (3539498)
Chandrabali Ghose (61491)
David Pride (3419807)

December 2016

Study Subjects. Table S2. Viral homologues within and between households. Table S3. Primer sequences...

Additional file 3: of Genome sequencing of strains of the most prevalent clonal group of O1:K1:H7 Escherichia coli that causes neonatal meningitis in France

Guillaume Geslain (6242036)
André Birgy (6242039)
Sandrine Adiba (362590)
Mélanie Magnan (304705)
Céline Courroux (6242042)
Corinne Levy (317205)
Robert Cohen (317208)
Philippe Bidet (160707)
Stéphane Bonacorsi (75195)

January 2019

Sequencing data information; description: N50, N75, Minimum contig Length, Maximum contig Length, Av...

Additional file 2: of Risk factors and molecular features of sequence type (ST) 131 extended-Spectrum-Î˛-lactamase-producing Escherichia coli in community-onset female genital tract infections

Young Kim (1259280)
Kyungwon Lee (415329)
Jae Chung (5331263)

June 2018

Table S2. Genetic information and antimicrobial susceptibility of Escherichia coli from female genit...

Additional file 2: of Genome sequencing of strains of the most prevalent clonal group of O1:K1:H7 Escherichia coli that causes neonatal meningitis in France

Guillaume Geslain (6242036)
André Birgy (6242039)
Sandrine Adiba (362590)
Mélanie Magnan (304705)
Céline Courroux (6242042)
Corinne Levy (317205)
Robert Cohen (317208)
Philippe Bidet (160707)
Stéphane Bonacorsi (75195)

January 2019

Primers of serotype PCR; description: list of primers and sequences used for serotype PCR. (DOCX 17 ...

Risk factors and molecular features of sequence type (ST) 131 extended-Spectrum-β-lactamase-producing Escherichia coli in community-onset female genital tract infections

Young Ah Kim
Kyungwon Lee
Jae Eun Chung

June 2018

Abstract Background Escherichia coli (E. coli) is known to cause urinary tract infection (UTI) and m...

Additional file 1: of High frequency of hybrid Escherichia coli strains with combined Intestinal Pathogenic Escherichia coli (IPEC) and Extraintestinal Pathogenic Escherichia coli (ExPEC) virulence factors isolated from human faecal samples

BjĂ¸rn-Arne Lindstedt (6032030)
Misti Finton (6032021)
Davide Porcellato (5016440)
Lin Brandal (3571076)

November 2018

PCR primers used in study. Sequences of all PCR-primers used in this study, with references. (DOCX 1...

Additional file 2: of Diversity of virulence level phenotype of hypervirulent Klebsiella pneumoniae from different sequence type lineage

Qiucheng Shi (3233457)
Peng Lan (5699819)
Danyan Huang (5148011)
Xiaoting Hua (435699)
Yan Jiang (12139)
Jiancang Zhou (3233460)
Yunsong Yu (496103)

August 2018

Table S1. PCR primers used for studying Serotype and Virulence-Associated Genes of Klebsiella pneumo...

Additional file 2: of Genome sequences of two closely related strains of Escherichia coli K-12 GM4792

Yan-Cong Zhang (3495206)
Yan Zhang (8098)
Bi-Ru Zhu (3495203)
Bo-Wen Zhang (849406)
Chuan Ni (238144)
Da-Yong Zhang (16644)
Ying Huang (53474)
Erli Pang (416861)
Kui Lin (16645)

December 2015

PCR experiment description. Table S8. The primer sequences for two GM4792 strains. Figure S5. The pr...

Additional file 4: of Genome sequencing of strains of the most prevalent clonal group of O1:K1:H7 Escherichia coli that causes neonatal meningitis in France

Guillaume Geslain (6242036)
André Birgy (6242039)
Sandrine Adiba (362590)
Mélanie Magnan (304705)
Céline Courroux (6242042)
Corinne Levy (317205)
Robert Cohen (317208)
Philippe Bidet (160707)
Stéphane Bonacorsi (75195)

January 2019

166 genes searched by local blast analysis using the NCBI blast tool; description: list of genes sea...

Additional file 1 of Distribution of papG alleles among uropathogenic Escherichia coli from reproductive age women

Timothy Kudinha (647162)
Fanrong Kong (218191)

September 2022

Additional file 1: Table S1. Novel oligonucleotide probes and primers developed for the mPCR/RLB ass...

Additional file 1: of Whole genome sequencing reveals high clonal diversity of Escherichia coli isolated from patients in a tertiary care hospital in Moshi, Tanzania

Tolbert Sonda (3514244)
Happiness Kumburu (3514241)
Marco van Zwetselaar (3514238)
Michael Alifrangis (79967)
Blandina Mmbaga (3639784)
Frank Aarestrup (3514247)
Gibson Kibiki (205459)
Ole Lund (26628)

June 2018

Table S1. A pairwise genome comparison matrix of SNP differences for E. coli ST131. (XLS 34 kb

Additional file 2: of High frequency of hybrid Escherichia coli strains with combined Intestinal Pathogenic Escherichia coli (IPEC) and Extraintestinal Pathogenic Escherichia coli (ExPEC) virulence factors isolated from human faecal samples

BjĂ¸rn-Arne Lindstedt (6032030)
Misti Finton (6032021)
Davide Porcellato (5016440)
Lin Brandal (3571076)

November 2018

The Excel sheet contains VAGs PCR, Phylogenetic PCR and MLVA results for all E. coli strains include...

Additional file 1: of Whole genome analyses of CMY-2-producing Escherichia coli isolates from humans, animals and food in Germany

Michael Pietsch (3317112)
Alexandra Irrgang (2889134)
Nicole Roschanski (599844)
Geovana Brenner Michael (5618447)
Axel Hamprecht (605845)
Heime Rieber (5618456)
Annemarie KĂ¤sbohrer (5618477)
Stefan Schwarz (166988)
Uwe RĂśsler (5618480)
Lothar Kreienbrock (705028)
Yvonne Pfeifer (457305)
Stephan Fuchs (256450)
Guido Werner (28655)

August 2018

Table S1. Characteristics of 164 CMY-2 -producing Escherichia coli isolates from different sources, ...

Genomic attributes of extended-spectrum β-lactamase-producing Escherichia coli isolated from patients in Lebanon.

Tokajian, Sima
Salloum, Tamara
Eisen, Jonathan A
Jospin, Guillaume
Farra, Anna
Mokhbat, Jacques E
Coil, David A

March 2017

AimExtended-spectrum β-lactamase-producing (ESBL) Escherichia coli are a public threat worldwide. Th...

Additional file 3: Figure S1. of Whole genome sequencing of ESBL-producing Escherichia coli isolated from patients, farm waste and canals in Thailand

Chakkaphan Runcharoen (3693409)
Kathy Raven (3571811)
Sandra Reuter (494672)
Teemu Kallonen (219420)
Suporn Paksanont (3693406)
Jeeranan Thammachote (3693403)
Suthatip Anun (3693400)
Beth Blane (3533447)
Julian Parkhill (30393)
Sharon Peacock (3499622)
Narisara Chantratita (33898)

September 2017

Predominant STs of ESBL-producing E. coli isolated from clinical and environmental origins in Thaila...

Additional file 1: Table S1. of Transmission of viruses via our microbiomes

Melissa Ly (787775)
Marcus Jones (1784308)
Shira Abeles (3526082)
Tasha Santiago-Rodriguez (3419813)
Jonathan Gao (3539495)
Ivan Chan (3539498)
Chandrabali Ghose (61491)
David Pride (3419807)

December 2016

Study Subjects. Table S2. Viral homologues within and between households. Table S3. Primer sequences...

Additional file 3: of Genome sequencing of strains of the most prevalent clonal group of O1:K1:H7 Escherichia coli that causes neonatal meningitis in France

Guillaume Geslain (6242036)
André Birgy (6242039)
Sandrine Adiba (362590)
Mélanie Magnan (304705)
Céline Courroux (6242042)
Corinne Levy (317205)
Robert Cohen (317208)
Philippe Bidet (160707)
Stéphane Bonacorsi (75195)

January 2019

Sequencing data information; description: N50, N75, Minimum contig Length, Maximum contig Length, Av...

Additional file 1: of Risk factors and molecular features of sequence type (ST) 131 extended-Spectrum-Î˛-lactamase-producing Escherichia coli in community-onset female genital tract infections

Abstract

Extracted data

Additional file 1: of Risk factors and molecular features of sequence type (ST) 131 extended-Spectrum-Î˛-lactamase-producing Escherichia coli in community-onset female genital tract infections

Abstract

Extracted data

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