Additional file 3: of Stage-dependent piRNAs in chicken implicated roles in modulating male germ cell development

Additional file 1: of Identification of microRNAs controlling hepatic mRNA levels for metabolic genes during the metabolic transition from embryonic to posthatch development in the chicken

Julie Hicks (4411786)
Tom Porter (4411789)
Hsiao-Ching Liu (493573)

September 2017

All identified miRNAs expressed in the liver of E18, E20, D0, D1, and D3 chicks. Values are given as...

Additional file 1: of Comparative omics and feeding manipulations in chicken indicate a shift of the endocrine role of visceral fat towards reproduction

Susanne Bornelöv (189128)
Eyal Seroussi (31976)
Sara Yosefi (165264)
Sharon Benjamini (5144234)
Shoval Miyara (4346146)
Mark Ruzal (5144231)
Manfred Grabherr (2576317)
Nima Rafati (3292704)
Anna-Maja Molin (190648)
Ken Pendavis (4110652)
Shane Burgess (3505550)
Leif Andersson (42573)
Miriam Friedman-Einat (165278)

April 2018

RNA-seq. Data. Table S1. Information about the RNA sequencing. Table S2: Transcripts identified by R...

Additional file 1 of Analysis of the differentially expressed genes in the combs and testes of Qingyuan partridge roosters at different developmental stages

Hao Qi (1779124)
Zhidan Deng (17738041)
Fei Ye (339913)
Junwei Gou (17738044)
Miaoxin Huang (17738047)
Hai Xiang (3913597)
Hua Li (46469)

January 2024

Additional file 1: Figure S1: Real-time quantitative PCR (RT-qPCR) analysis of the candidate DEG

Additional file 4: of Stage-dependent piRNAs in chicken implicated roles in modulating male germ cell development

Kai-Wei Chang (5331689)
Yen-Tzu Tseng (314712)
Yi-Chen Chen (656138)
Chih-Yun Yu (5331698)
Hung-Fu Liao (5331701)
Yi-Chun Chen (189669)
Yu-Fan Tu (5331692)
Shinn-Chih Wu (180923)
I-Hsuan Liu (324814)
Marina Pinskaya (37769)
Antonin Morillon (214415)
Bertrand Pain (3459374)
Shau-Ping Lin (154993)

June 2018

Table S5. Number of piRNAs (in piRPM) mapped to TEs embedded in the transcripts that are highly asso...

Additional file 2: of Stage-dependent piRNAs in chicken implicated roles in modulating male germ cell development

Kai-Wei Chang (5331689)
Yen-Tzu Tseng (314712)
Yi-Chen Chen (656138)
Chih-Yun Yu (5331698)
Hung-Fu Liao (5331701)
Yi-Chun Chen (189669)
Yu-Fan Tu (5331692)
Shinn-Chih Wu (180923)
I-Hsuan Liu (324814)
Marina Pinskaya (37769)
Antonin Morillon (214415)
Bertrand Pain (3459374)
Shau-Ping Lin (154993)

June 2018

Table S2. Number of piRNAs (in piRPM) mapped to TEs embedded in the transcripts that are differentia...

Additional file 1: of Stage-dependent piRNAs in chicken implicated roles in modulating male germ cell development

Kai-Wei Chang (5331689)
Yen-Tzu Tseng (314712)
Yi-Chen Chen (656138)
Chih-Yun Yu (5331698)
Hung-Fu Liao (5331701)
Yi-Chun Chen (189669)
Yu-Fan Tu (5331692)
Shinn-Chih Wu (180923)
I-Hsuan Liu (324814)
Marina Pinskaya (37769)
Antonin Morillon (214415)
Bertrand Pain (3459374)
Shau-Ping Lin (154993)

June 2018

Figure S1. High-confidence piRNA candidate identification pipeline. Figure S2. Examination of germ c...

Stage-dependent piRNAs in chicken implicated roles in modulating male germ cell development

Chang, Kai-Wei
Tseng, Yen-Tzu
Chen, Yi-Chen
Yu, Chih-Yun
Liao, Hung-Fu
Chen, Yi-Chun
Tu, Yu-Fan Evan
Wu, Shinn-Chih
Liu, I-Hsuan
Pinskaya, Marina
Morillon, Antonin
Pain, Bertrand

January 2018

Background: The PIWl/piRNA pathway is a conserved machinery important for germ cell development and ...

Stage-dependent piRNAs in chicken implicated roles in modulating male germ cell development

Chang, Kai-Wei
Tseng, Yen-Tzu
Chen, Yi-Chen
Yu, Chih-Yun
Liao, Hung-Fu
Chen, Yi-Chun
Tu, Yu-Fan Evan
Wu, Shinn-Chih
Liu, I-Hsuan
Pinskaya, Marina
Morillon, Antonin
Pain, Bertrand
Lin, Shau-Ping

December 2018

International audienceBackground: The PIWl/piRNA pathway is a conserved machinery important for germ...

Stage-dependent piRNAs in chicken implicated roles in modulating male germ cell development

Chang, Kai-Wei
Tseng, Yen-Tzu
Chen, Yi-Chen
Yu, Chih-Yun
Liao, Hung-Fu
Chen, Yi-Chun
Tu, Yu-Fan Evan
Wu, Shinn-Chih
Liu, I-Hsuan
Pinskaya, Marina
Morillon, Antonin
Pain, Bertrand
Lin, Shau-Ping

December 2018

International audienceBackground: The PIWl/piRNA pathway is a conserved machinery important for germ...

Stage-dependent piRNAs in chicken implicated roles in modulating male germ cell development

Chang, Kai-Wei
Tseng, Yen-Tzu
Chen, Yi-Chen
Yu, Chih-Yun
Liao, Hung-Fu
Chen, Yi-Chun
Tu, Yu-Fan Evan
Wu, Shinn-Chih
Liu, I-Hsuan
Pinskaya, Marina
Morillon, Antonin
Pain, Bertrand
Lin, Shau-Ping

December 2018

International audienceBackground: The PIWl/piRNA pathway is a conserved machinery important for germ...

Stage-dependent piRNAs in chicken implicated roles in modulating male germ cell development

Chang, Kai-Wei
Tseng, Yen-Tzu
Chen, Yi-Chen
Yu, Chih-Yun
Liao, Hung-Fu
Chen, Yi-Chun
Tu, Yu-Fan Evan
Wu, Shinn-Chih
Liu, I-Hsuan
Pinskaya, Marina
Morillon, Antonin
Pain, Bertrand
Lin, Shau-Ping

December 2018

International audienceBackground: The PIWl/piRNA pathway is a conserved machinery important for germ...

Small non-coding RNA profiling and the role of piRNA pathway genes in the protection of chicken primordial germ cells

Rengaraj, Deivendran
Lee, Sang In
Park, Tae Sub
Lee, Hong Jo
Kim, Young Min
Sohn, Yoon Ah
Jung, Myunghee
Noh, Seung-Jae
Jung, Hojin
Han, Jae Yong

January 2014

This is an Open Access article distributed under the terms of the Creative Commons Attribution Lice...

Additional file 1: of Dynamic expression and functional analysis of circRNA in granulosa cells during follicular development in chicken

Manman Shen (3151977)
Tingting Li (10553)
Genxi Zhang (3749959)
Pengfei Wu (3200082)
Fuxiang Chen (5162699)
Qiuhong Lou (6279737)
Lan Chen (16760)
Xuemei Yin (751017)
Tao Zhang (43681)
Jinyu Wang (381467)

January 2019

Table S1. Detailed information of primers used in this study. Table S2. All novel circRNAs detected ...

Additional file 3: of A single-cell transcriptomic atlas of the developing chicken limb

Christian Feregrino (6726887)
Fabio Sacher (6726890)
Oren Parnas (372898)
Patrick Tschopp (266480)

May 2019

Genes with enriched expression per cell population in sample HH29. Genes enriched in the different c...

Additional file 4: of A single-cell transcriptomic atlas of the developing chicken limb

Christian Feregrino (6726887)
Fabio Sacher (6726890)
Oren Parnas (372898)
Patrick Tschopp (266480)

May 2019

Genes with enriched expression per cell population in sample HH31. Genes enriched in the different c...

Additional file 1: of Identification of microRNAs controlling hepatic mRNA levels for metabolic genes during the metabolic transition from embryonic to posthatch development in the chicken

Julie Hicks (4411786)
Tom Porter (4411789)
Hsiao-Ching Liu (493573)

September 2017

All identified miRNAs expressed in the liver of E18, E20, D0, D1, and D3 chicks. Values are given as...

Additional file 1: of Comparative omics and feeding manipulations in chicken indicate a shift of the endocrine role of visceral fat towards reproduction

Susanne Bornelöv (189128)
Eyal Seroussi (31976)
Sara Yosefi (165264)
Sharon Benjamini (5144234)
Shoval Miyara (4346146)
Mark Ruzal (5144231)
Manfred Grabherr (2576317)
Nima Rafati (3292704)
Anna-Maja Molin (190648)
Ken Pendavis (4110652)
Shane Burgess (3505550)
Leif Andersson (42573)
Miriam Friedman-Einat (165278)

April 2018

RNA-seq. Data. Table S1. Information about the RNA sequencing. Table S2: Transcripts identified by R...

Additional file 1 of Analysis of the differentially expressed genes in the combs and testes of Qingyuan partridge roosters at different developmental stages

Hao Qi (1779124)
Zhidan Deng (17738041)
Fei Ye (339913)
Junwei Gou (17738044)
Miaoxin Huang (17738047)
Hai Xiang (3913597)
Hua Li (46469)

January 2024

Additional file 1: Figure S1: Real-time quantitative PCR (RT-qPCR) analysis of the candidate DEG

Additional file 4: of Stage-dependent piRNAs in chicken implicated roles in modulating male germ cell development

Kai-Wei Chang (5331689)
Yen-Tzu Tseng (314712)
Yi-Chen Chen (656138)
Chih-Yun Yu (5331698)
Hung-Fu Liao (5331701)
Yi-Chun Chen (189669)
Yu-Fan Tu (5331692)
Shinn-Chih Wu (180923)
I-Hsuan Liu (324814)
Marina Pinskaya (37769)
Antonin Morillon (214415)
Bertrand Pain (3459374)
Shau-Ping Lin (154993)

June 2018

Table S5. Number of piRNAs (in piRPM) mapped to TEs embedded in the transcripts that are highly asso...

Additional file 2: of Stage-dependent piRNAs in chicken implicated roles in modulating male germ cell development

Kai-Wei Chang (5331689)
Yen-Tzu Tseng (314712)
Yi-Chen Chen (656138)
Chih-Yun Yu (5331698)
Hung-Fu Liao (5331701)
Yi-Chun Chen (189669)
Yu-Fan Tu (5331692)
Shinn-Chih Wu (180923)
I-Hsuan Liu (324814)
Marina Pinskaya (37769)
Antonin Morillon (214415)
Bertrand Pain (3459374)
Shau-Ping Lin (154993)

June 2018

Table S2. Number of piRNAs (in piRPM) mapped to TEs embedded in the transcripts that are differentia...

Additional file 1: of Stage-dependent piRNAs in chicken implicated roles in modulating male germ cell development

Kai-Wei Chang (5331689)
Yen-Tzu Tseng (314712)
Yi-Chen Chen (656138)
Chih-Yun Yu (5331698)
Hung-Fu Liao (5331701)
Yi-Chun Chen (189669)
Yu-Fan Tu (5331692)
Shinn-Chih Wu (180923)
I-Hsuan Liu (324814)
Marina Pinskaya (37769)
Antonin Morillon (214415)
Bertrand Pain (3459374)
Shau-Ping Lin (154993)

June 2018

Figure S1. High-confidence piRNA candidate identification pipeline. Figure S2. Examination of germ c...

Stage-dependent piRNAs in chicken implicated roles in modulating male germ cell development

Chang, Kai-Wei
Tseng, Yen-Tzu
Chen, Yi-Chen
Yu, Chih-Yun
Liao, Hung-Fu
Chen, Yi-Chun
Tu, Yu-Fan Evan
Wu, Shinn-Chih
Liu, I-Hsuan
Pinskaya, Marina
Morillon, Antonin
Pain, Bertrand

January 2018

Background: The PIWl/piRNA pathway is a conserved machinery important for germ cell development and ...

Stage-dependent piRNAs in chicken implicated roles in modulating male germ cell development

Chang, Kai-Wei
Tseng, Yen-Tzu
Chen, Yi-Chen
Yu, Chih-Yun
Liao, Hung-Fu
Chen, Yi-Chun
Tu, Yu-Fan Evan
Wu, Shinn-Chih
Liu, I-Hsuan
Pinskaya, Marina
Morillon, Antonin
Pain, Bertrand
Lin, Shau-Ping

December 2018

International audienceBackground: The PIWl/piRNA pathway is a conserved machinery important for germ...

Stage-dependent piRNAs in chicken implicated roles in modulating male germ cell development

Chang, Kai-Wei
Tseng, Yen-Tzu
Chen, Yi-Chen
Yu, Chih-Yun
Liao, Hung-Fu
Chen, Yi-Chun
Tu, Yu-Fan Evan
Wu, Shinn-Chih
Liu, I-Hsuan
Pinskaya, Marina
Morillon, Antonin
Pain, Bertrand
Lin, Shau-Ping

December 2018

International audienceBackground: The PIWl/piRNA pathway is a conserved machinery important for germ...

Stage-dependent piRNAs in chicken implicated roles in modulating male germ cell development

Chang, Kai-Wei
Tseng, Yen-Tzu
Chen, Yi-Chen
Yu, Chih-Yun
Liao, Hung-Fu
Chen, Yi-Chun
Tu, Yu-Fan Evan
Wu, Shinn-Chih
Liu, I-Hsuan
Pinskaya, Marina
Morillon, Antonin
Pain, Bertrand
Lin, Shau-Ping

December 2018

International audienceBackground: The PIWl/piRNA pathway is a conserved machinery important for germ...

Stage-dependent piRNAs in chicken implicated roles in modulating male germ cell development

Chang, Kai-Wei
Tseng, Yen-Tzu
Chen, Yi-Chen
Yu, Chih-Yun
Liao, Hung-Fu
Chen, Yi-Chun
Tu, Yu-Fan Evan
Wu, Shinn-Chih
Liu, I-Hsuan
Pinskaya, Marina
Morillon, Antonin
Pain, Bertrand
Lin, Shau-Ping

December 2018

International audienceBackground: The PIWl/piRNA pathway is a conserved machinery important for germ...

Small non-coding RNA profiling and the role of piRNA pathway genes in the protection of chicken primordial germ cells

Rengaraj, Deivendran
Lee, Sang In
Park, Tae Sub
Lee, Hong Jo
Kim, Young Min
Sohn, Yoon Ah
Jung, Myunghee
Noh, Seung-Jae
Jung, Hojin
Han, Jae Yong

January 2014

This is an Open Access article distributed under the terms of the Creative Commons Attribution Lice...

Additional file 1: of Dynamic expression and functional analysis of circRNA in granulosa cells during follicular development in chicken

Manman Shen (3151977)
Tingting Li (10553)
Genxi Zhang (3749959)
Pengfei Wu (3200082)
Fuxiang Chen (5162699)
Qiuhong Lou (6279737)
Lan Chen (16760)
Xuemei Yin (751017)
Tao Zhang (43681)
Jinyu Wang (381467)

January 2019

Table S1. Detailed information of primers used in this study. Table S2. All novel circRNAs detected ...

Additional file 3: of A single-cell transcriptomic atlas of the developing chicken limb

Christian Feregrino (6726887)
Fabio Sacher (6726890)
Oren Parnas (372898)
Patrick Tschopp (266480)

May 2019

Genes with enriched expression per cell population in sample HH29. Genes enriched in the different c...

Additional file 4: of A single-cell transcriptomic atlas of the developing chicken limb

Christian Feregrino (6726887)
Fabio Sacher (6726890)
Oren Parnas (372898)
Patrick Tschopp (266480)

May 2019

Genes with enriched expression per cell population in sample HH31. Genes enriched in the different c...

Additional file 1: of Identification of microRNAs controlling hepatic mRNA levels for metabolic genes during the metabolic transition from embryonic to posthatch development in the chicken

Julie Hicks (4411786)
Tom Porter (4411789)
Hsiao-Ching Liu (493573)

September 2017

All identified miRNAs expressed in the liver of E18, E20, D0, D1, and D3 chicks. Values are given as...

Additional file 1: of Comparative omics and feeding manipulations in chicken indicate a shift of the endocrine role of visceral fat towards reproduction

Susanne Bornelöv (189128)
Eyal Seroussi (31976)
Sara Yosefi (165264)
Sharon Benjamini (5144234)
Shoval Miyara (4346146)
Mark Ruzal (5144231)
Manfred Grabherr (2576317)
Nima Rafati (3292704)
Anna-Maja Molin (190648)
Ken Pendavis (4110652)
Shane Burgess (3505550)
Leif Andersson (42573)
Miriam Friedman-Einat (165278)

April 2018

RNA-seq. Data. Table S1. Information about the RNA sequencing. Table S2: Transcripts identified by R...

Additional file 1 of Analysis of the differentially expressed genes in the combs and testes of Qingyuan partridge roosters at different developmental stages

Hao Qi (1779124)
Zhidan Deng (17738041)
Fei Ye (339913)
Junwei Gou (17738044)
Miaoxin Huang (17738047)
Hai Xiang (3913597)
Hua Li (46469)

January 2024

Additional file 1: Figure S1: Real-time quantitative PCR (RT-qPCR) analysis of the candidate DEG

Additional file 3: of Stage-dependent piRNAs in chicken implicated roles in modulating male germ cell development

Abstract

Extracted data

Additional file 3: of Stage-dependent piRNAs in chicken implicated roles in modulating male germ cell development

Abstract

Extracted data

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