Q-Q plot (left) and patterns of LD blocks (right) of GWAS results indicating the position of candidate genes and/or QTL regions associated with grain quality traits.

Summary of QTLs identified for spikelet- and grain-shape related traits in the KU-2003/KU-2124 and PI476874/IG47182 populations.

Ryo Nishijima (3815566)
Yuki Okamoto (1955173)
Hitoshi Hatano (3815569)
Shigeo Takumi (60369)

March 2017

Summary of QTLs identified for spikelet- and grain-shape related traits in the KU-2003/KU-2124 an...

Additional file 10 of Patterns of genetic variation and QTLs controlling grain traits in a collection of global wheat germplasm revealed by high-quality SNP markers

Chia-Hui Chou (5352761)
Hsun-Shih Lin (13842075)
Chen-Hsin Wen (13842078)
Chih-Wei Tung (13842081)

September 2022

Additional file 10: Supplementary Fig. S10. Genome-wide association mapping for color channel 2. Man...

Manhattan plots of GWAS results for grain quality traits (AC, amylose content; ASV, alkali spreading value; GW, grain width; L_W, grain length to width ratio); Threshold = −log10(p−value) > 3.

Maurice Mogga (5328743)
Julia Sibiya (5328740)
Hussein Shimelis (3746494)
Jimmy Lamo (5328746)
Nasser Yao (2935977)

June 2018

Manhattan plots of GWAS results for grain quality traits (AC, amylose content; ASV, alkali spread...

The integrated genetic map, single-trait QTL for grain starch content in single-population and joint-population analysis, and multiple-trait QTL for starch and oil content on chromosomes.

Guohu Yang (290237)
Yongbin Dong (290238)
Yuling Li (290240)
Qilei Wang (290242)
Qingling Shi (290245)
Qiang Zhou (29805)

February 2013

QTL are showed to the left of chromosome. One-LOD support intervals are indicated by vertical ...

Genomewide scan for multi-trait QTL for grain yield and agronomic traits.

Silvano O. Assanga (4710159)
Maria Fuentealba (4710156)
Guorong Zhang (3139737)
ChorTee Tan (4710153)
Smit Dhakal (4710154)
Jackie C. Rudd (4710155)
Amir M. H. Ibrahim (4242814)
Qingwu Xue (2622400)
Scott Haley (4710157)
Jianli Chen (1976941)
Shiaoman Chao (393351)
Jason Baker (4117303)
Kirk Jessup (4710158)
Shuyu Liu (4710160)

December 2017

The upper graph is the QTL profile plot with the y-axis representing the log of likelihood, -log ...

Additional file 6 of Patterns of genetic variation and QTLs controlling grain traits in a collection of global wheat germplasm revealed by high-quality SNP markers

Chia-Hui Chou (5352761)
Hsun-Shih Lin (13842075)
Chen-Hsin Wen (13842078)
Chih-Wei Tung (13842081)

September 2022

Additional file 6: Supplementary Fig. S6. Genome-wide association mapping for grain width. Manhattan...

Summary of QTLs identified for spikelet- and grain-shape related traits in the KU-2078/PI499262 population.

Ryo Nishijima (3815566)
Yuki Okamoto (1955173)
Hitoshi Hatano (3815569)
Shigeo Takumi (60369)

March 2017

Summary of QTLs identified for spikelet- and grain-shape related traits in the KU-2078/PI499262 p...

Additional file 7 of Patterns of genetic variation and QTLs controlling grain traits in a collection of global wheat germplasm revealed by high-quality SNP markers

Chia-Hui Chou (5352761)
Hsun-Shih Lin (13842075)
Chen-Hsin Wen (13842078)
Chih-Wei Tung (13842081)

September 2022

Additional file 7: Supplementary Fig. S7. Genome-wide association mapping for the grain perimeter. M...

Approved by:

Roby Joehanes
Universitas Pelita Harapan
Major Professor
Dr. Gary
L. Gadbury
Roby Joehanes

January 2009

QTL (quantitative-trait locus) analysis aims to locate and estimate the effects of genes that are re...

QTL detected for grain starch content in the two RIL populations under each environment and in combined analysis.

Guohu Yang (290237)
Yongbin Dong (290238)
Yuling Li (290240)
Qilei Wang (290242)
Qingling Shi (290245)
Qiang Zhou (29805)

February 2013

aValues in the brackets were the intervals between QTL and its ﬂanking markers.bBin locati...

Additional file 9 of Patterns of genetic variation and QTLs controlling grain traits in a collection of global wheat germplasm revealed by high-quality SNP markers

Chia-Hui Chou (5352761)
Hsun-Shih Lin (13842075)
Chen-Hsin Wen (13842078)
Chih-Wei Tung (13842081)

September 2022

Additional file 9: Supplementary Fig. S9. Genome-wide association mapping for color channel 1. Manha...

Defining QTL Boundaries from GWAS Results

Cormier, Fabien
Le Gouis, Jacques
Lafarge, Stéphane
Praud, Sébastien

January 2015

International audienceAlthough it is necessary to identify candidate genes, there is actually no wel...

Locations of detected QTLs.

Kazuki Matsubara (465175)
Jun-ichi Yonemaru (177933)
Nobuya Kobayashi (3176853)
Takuro Ishii (3176850)
Eiji Yamamoto (113384)
Ritsuko Mizobuchi (3176856)
Hiroshi Tsunematsu (3176859)
Toshio Yamamoto (65296)
Hiroshi Kato (550295)
Masahiro Yano (177951)

October 2018

Vertical bars to the right of the linkage maps denote 1-LOD confidence intervals, and horizontal bar...

QTL analysis for grain protein content using SSR markers and validation studies using NILs in bread wheat

Prasad, M.
Kumar, N.
Kulwal, P.
Röder, M.
Balyan, H.
Dhaliwal, H.
Gupta, P.

January 2003

QTL interval mapping for grain protein content (GPC) in bread wheat was conducted for the first time...

Phenotypic distribution of GWAS results for grain quality traits (AC, amylose content; ASV, alkali spreading value; GW, grain width; L/W, grain length to width ratio); grain shape (length/width ratio): slender≥3.0; Medium = 2.1–3.0; Bold = 1.1–2.0; Round<1.1; Grain length: Extra-long(≥7.5 mm); Long (6.6–7.5 mm); Medium (5.51–6.6 mm); Short (<5.51mm).

Maurice Mogga (5328743)
Julia Sibiya (5328740)
Hussein Shimelis (3746494)
Jimmy Lamo (5328746)
Nasser Yao (2935977)

June 2018

Phenotypic distribution of GWAS results for grain quality traits (AC, amylose content; ASV, alkal...

Summary of QTLs identified for spikelet- and grain-shape related traits in the KU-2003/KU-2124 and PI476874/IG47182 populations.

Ryo Nishijima (3815566)
Yuki Okamoto (1955173)
Hitoshi Hatano (3815569)
Shigeo Takumi (60369)

March 2017

Summary of QTLs identified for spikelet- and grain-shape related traits in the KU-2003/KU-2124 an...

Additional file 10 of Patterns of genetic variation and QTLs controlling grain traits in a collection of global wheat germplasm revealed by high-quality SNP markers

Chia-Hui Chou (5352761)
Hsun-Shih Lin (13842075)
Chen-Hsin Wen (13842078)
Chih-Wei Tung (13842081)

September 2022

Additional file 10: Supplementary Fig. S10. Genome-wide association mapping for color channel 2. Man...

Manhattan plots of GWAS results for grain quality traits (AC, amylose content; ASV, alkali spreading value; GW, grain width; L_W, grain length to width ratio); Threshold = −log10(p−value) > 3.

Maurice Mogga (5328743)
Julia Sibiya (5328740)
Hussein Shimelis (3746494)
Jimmy Lamo (5328746)
Nasser Yao (2935977)

June 2018

Manhattan plots of GWAS results for grain quality traits (AC, amylose content; ASV, alkali spread...

The integrated genetic map, single-trait QTL for grain starch content in single-population and joint-population analysis, and multiple-trait QTL for starch and oil content on chromosomes.

Guohu Yang (290237)
Yongbin Dong (290238)
Yuling Li (290240)
Qilei Wang (290242)
Qingling Shi (290245)
Qiang Zhou (29805)

February 2013

QTL are showed to the left of chromosome. One-LOD support intervals are indicated by vertical ...

Genomewide scan for multi-trait QTL for grain yield and agronomic traits.

Silvano O. Assanga (4710159)
Maria Fuentealba (4710156)
Guorong Zhang (3139737)
ChorTee Tan (4710153)
Smit Dhakal (4710154)
Jackie C. Rudd (4710155)
Amir M. H. Ibrahim (4242814)
Qingwu Xue (2622400)
Scott Haley (4710157)
Jianli Chen (1976941)
Shiaoman Chao (393351)
Jason Baker (4117303)
Kirk Jessup (4710158)
Shuyu Liu (4710160)

December 2017

The upper graph is the QTL profile plot with the y-axis representing the log of likelihood, -log ...

Additional file 6 of Patterns of genetic variation and QTLs controlling grain traits in a collection of global wheat germplasm revealed by high-quality SNP markers

Chia-Hui Chou (5352761)
Hsun-Shih Lin (13842075)
Chen-Hsin Wen (13842078)
Chih-Wei Tung (13842081)

September 2022

Additional file 6: Supplementary Fig. S6. Genome-wide association mapping for grain width. Manhattan...

Summary of QTLs identified for spikelet- and grain-shape related traits in the KU-2078/PI499262 population.

Ryo Nishijima (3815566)
Yuki Okamoto (1955173)
Hitoshi Hatano (3815569)
Shigeo Takumi (60369)

March 2017

Summary of QTLs identified for spikelet- and grain-shape related traits in the KU-2078/PI499262 p...

Additional file 7 of Patterns of genetic variation and QTLs controlling grain traits in a collection of global wheat germplasm revealed by high-quality SNP markers

Chia-Hui Chou (5352761)
Hsun-Shih Lin (13842075)
Chen-Hsin Wen (13842078)
Chih-Wei Tung (13842081)

September 2022

Additional file 7: Supplementary Fig. S7. Genome-wide association mapping for the grain perimeter. M...

Approved by:

Roby Joehanes
Universitas Pelita Harapan
Major Professor
Dr. Gary
L. Gadbury
Roby Joehanes

January 2009

QTL (quantitative-trait locus) analysis aims to locate and estimate the effects of genes that are re...

QTL detected for grain starch content in the two RIL populations under each environment and in combined analysis.

Guohu Yang (290237)
Yongbin Dong (290238)
Yuling Li (290240)
Qilei Wang (290242)
Qingling Shi (290245)
Qiang Zhou (29805)

February 2013

aValues in the brackets were the intervals between QTL and its ﬂanking markers.bBin locati...

Additional file 9 of Patterns of genetic variation and QTLs controlling grain traits in a collection of global wheat germplasm revealed by high-quality SNP markers

Chia-Hui Chou (5352761)
Hsun-Shih Lin (13842075)
Chen-Hsin Wen (13842078)
Chih-Wei Tung (13842081)

September 2022

Additional file 9: Supplementary Fig. S9. Genome-wide association mapping for color channel 1. Manha...

Defining QTL Boundaries from GWAS Results

Cormier, Fabien
Le Gouis, Jacques
Lafarge, Stéphane
Praud, Sébastien

January 2015

International audienceAlthough it is necessary to identify candidate genes, there is actually no wel...

Locations of detected QTLs.

Kazuki Matsubara (465175)
Jun-ichi Yonemaru (177933)
Nobuya Kobayashi (3176853)
Takuro Ishii (3176850)
Eiji Yamamoto (113384)
Ritsuko Mizobuchi (3176856)
Hiroshi Tsunematsu (3176859)
Toshio Yamamoto (65296)
Hiroshi Kato (550295)
Masahiro Yano (177951)

October 2018

Vertical bars to the right of the linkage maps denote 1-LOD confidence intervals, and horizontal bar...

QTL analysis for grain protein content using SSR markers and validation studies using NILs in bread wheat

Prasad, M.
Kumar, N.
Kulwal, P.
Röder, M.
Balyan, H.
Dhaliwal, H.
Gupta, P.

January 2003

QTL interval mapping for grain protein content (GPC) in bread wheat was conducted for the first time...

Phenotypic distribution of GWAS results for grain quality traits (AC, amylose content; ASV, alkali spreading value; GW, grain width; L/W, grain length to width ratio); grain shape (length/width ratio): slender≥3.0; Medium = 2.1–3.0; Bold = 1.1–2.0; Round<1.1; Grain length: Extra-long(≥7.5 mm); Long (6.6–7.5 mm); Medium (5.51–6.6 mm); Short (<5.51mm).

Maurice Mogga (5328743)
Julia Sibiya (5328740)
Hussein Shimelis (3746494)
Jimmy Lamo (5328746)
Nasser Yao (2935977)

June 2018

Phenotypic distribution of GWAS results for grain quality traits (AC, amylose content; ASV, alkal...

Summary of QTLs identified for spikelet- and grain-shape related traits in the KU-2003/KU-2124 and PI476874/IG47182 populations.

Ryo Nishijima (3815566)
Yuki Okamoto (1955173)
Hitoshi Hatano (3815569)
Shigeo Takumi (60369)

March 2017

Summary of QTLs identified for spikelet- and grain-shape related traits in the KU-2003/KU-2124 an...

Additional file 10 of Patterns of genetic variation and QTLs controlling grain traits in a collection of global wheat germplasm revealed by high-quality SNP markers

Chia-Hui Chou (5352761)
Hsun-Shih Lin (13842075)
Chen-Hsin Wen (13842078)
Chih-Wei Tung (13842081)

September 2022

Additional file 10: Supplementary Fig. S10. Genome-wide association mapping for color channel 2. Man...

Manhattan plots of GWAS results for grain quality traits (AC, amylose content; ASV, alkali spreading value; GW, grain width; L_W, grain length to width ratio); Threshold = −log10(p−value) > 3.

Maurice Mogga (5328743)
Julia Sibiya (5328740)
Hussein Shimelis (3746494)
Jimmy Lamo (5328746)
Nasser Yao (2935977)

June 2018

Manhattan plots of GWAS results for grain quality traits (AC, amylose content; ASV, alkali spread...

Q-Q plot (left) and patterns of LD blocks (right) of GWAS results indicating the position of candidate genes and/or QTL regions associated with grain quality traits.

Abstract

Extracted data

Q-Q plot (left) and patterns of LD blocks (right) of GWAS results indicating the position of candidate genes and/or QTL regions associated with grain quality traits.

Abstract

Extracted data

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