Cladogram of the Kmer distance tree derived from the NCBI Pathogen Detection database comprising 5169 <i>Klebsiella pneumoniae</i> isolates at time of writing.

<p>The tree also shows MLST, <i>wzi</i> typing, and the presence of <i>bla</i>_OXA-48 and <i>bla</i>_NDM-1 genes for the 10 clinical isolates and sequence control strain (ATCC 43816), as well as their closest relatives. For space optimization, all other isolates were collapsed into straight lines comprising different numbers (aka leaves). Colistin susceptibility is indicated with different colored dots: green (susceptible); red (resistant); and white (no information). The identification for the BioSample and SNP cluster (when available) is also provided. The complete tree file from NCBI Pathogen detection (PDG000000012.284.reference_target.tree.asn—as of March 24th, 2018), can be downloaded at <a href="https://doi.org/10.6084/m9.figshare.5708347.v2" target="_blank">https://doi.org/10.6084/m9.figshare.5708347.v2</a> and can be opened with NCBI software Genome Workbench (<a href="https://www.ncbi.nlm.nih.gov/tools/gbench/" target="_blank">https://www.ncbi.nlm.nih.gov/tools/gbench/</a>). Given that the kmer tree only includes a reference isolate from each SNP clusters plus singleton isolates, CFSAN044573 (marked in gray) is not included in the original tree but it is listed here for completeness of information.